ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf147o04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001052705.1| Oryza sativa (japonica cultivar-group) Os02g... 84 1e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 1e-12
3dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 84 1e-12
4dbj|AK101237.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 1e-12
5gb|DQ245813.1| Zea mays clone 20491 mRNA sequence 64 9e-07
6gb|BT016925.1| Zea mays clone E04912703A05.c mRNA sequence 64 9e-07
7gb|AY106496.1| Zea mays PCO121832 mRNA sequence 64 9e-07
8emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on ... 48 0.053
9gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.83
10emb|AJ746198.1| Lettuce necrotic yellows virus N gene for nucleo... 44 0.83
11emb|AJ746197.1| Lettuce necrotic yellows virus N gene for nucleo... 44 0.83
12emb|AJ746196.1| Lettuce necrotic yellows virus N gene for nucleo... 44 0.83
13emb|AJ746193.1| Lettuce necrotic yellows virus N gene for nucleo... 44 0.83
14emb|AJ746192.1| Lettuce necrotic yellows virus N gene for nucleo... 44 0.83
15emb|AJ746190.1| Lettuce necrotic yellows virus N gene for nucleo... 44 0.83
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.83
17gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 3.3
18ref|XM_502825.1| Yarrowia lipolytica CLIB122, YALI0D14520g predi... 42 3.3
19emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 42 3.3 
>ref|NM_001052705.1| Oryza sativa (japonica cultivar-group) Os02g0193500 (Os02g0193500)
            mRNA, complete cds
          Length = 1513
 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                        
Query: 519  tctcgaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgtgca 578
            ||||||||| || ||||||||  ||||||||||||||||||| |||||||| |||||| |
Sbjct: 1200 tctcgaggatgaaaagtttgcgctgctggatcagcttgttgtgttggaaggccttgtgga 1259

                                          
Query: 579  gccttcgcaggtgcagccacagcgaaggct 608
             ||||| ||| ||||||||| | |||||||
Sbjct: 1260 tccttcacagatgcagccaccgagaaggct 1289



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 265 ataaaaactgaacctgaactgctgcggagggacgttccac 304
           |||||| |||||||||| |||||||||||||| |||||||
Sbjct: 946 ataaaagctgaacctgagctgctgcggagggaggttccac 985
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                           
Query: 519     tctcgaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgtgca 578
               ||||||||| || ||||||||  ||||||||||||||||||| |||||||| |||||| |
Sbjct: 5208367 tctcgaggatgaaaagtttgcgctgctggatcagcttgttgtgttggaaggccttgtgga 5208426

                                             
Query: 579     gccttcgcaggtgcagccacagcgaaggct 608
                ||||| ||| ||||||||| | |||||||
Sbjct: 5208427 tccttcacagatgcagccaccgagaaggct 5208456



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 265     ataaaaactgaacctgaactgctgcggagggacgttccac 304
               |||||| |||||||||| |||||||||||||| |||||||
Sbjct: 5208113 ataaaagctgaacctgagctgctgcggagggaggttccac 5208152
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>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0437H03
          Length = 170173

 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                          
Query: 519    tctcgaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgtgca 578
              ||||||||| || ||||||||  ||||||||||||||||||| |||||||| |||||| |
Sbjct: 101820 tctcgaggatgaaaagtttgcgctgctggatcagcttgttgtgttggaaggccttgtgga 101879

                                            
Query: 579    gccttcgcaggtgcagccacagcgaaggct 608
               ||||| ||| ||||||||| | |||||||
Sbjct: 101880 tccttcacagatgcagccaccgagaaggct 101909



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 265    ataaaaactgaacctgaactgctgcggagggacgttccac 304
              |||||| |||||||||| |||||||||||||| |||||||
Sbjct: 101566 ataaaagctgaacctgagctgctgcggagggaggttccac 101605
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>dbj|AK101237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031K13, full
            insert sequence
          Length = 1514

 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                        
Query: 519  tctcgaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgtgca 578
            ||||||||| || ||||||||  ||||||||||||||||||| |||||||| |||||| |
Sbjct: 1201 tctcgaggatgaaaagtttgcgctgctggatcagcttgttgtgttggaaggccttgtgga 1260

                                          
Query: 579  gccttcgcaggtgcagccacagcgaaggct 608
             ||||| ||| ||||||||| | |||||||
Sbjct: 1261 tccttcacagatgcagccaccgagaaggct 1290



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 265 ataaaaactgaacctgaactgctgcggagggacgttccac 304
           |||||| |||||||||| |||||||||||||| |||||||
Sbjct: 947 ataaaagctgaacctgagctgctgcggagggaggttccac 986
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>gb|DQ245813.1| Zea mays clone 20491 mRNA sequence
          Length = 701

 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 409 tctggtcctgcagatgaatatcgggcgctacggaggaagtacatgatgctggaggaagag 468
           ||||||||| | || ||||| || ||| || ||||||||||| |||||||||||||||||
Sbjct: 316 tctggtcctaccgacgaataccgtgcgttaaggaggaagtacctgatgctggaggaagag 375

               
Query: 469 aact 472
           ||||
Sbjct: 376 aact 379



 Score = 58.0 bits (29), Expect = 6e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 523 gaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgt 575
           ||||| || ||| ||||| |||| ||||||||||||||||||||||| |||||
Sbjct: 430 gaggatgaaaagcttgcactgcttgatcagcttgttgtcttggaaggccttgt 482
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>gb|BT016925.1| Zea mays clone E04912703A05.c mRNA sequence
          Length = 682

 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 409 tctggtcctgcagatgaatatcgggcgctacggaggaagtacatgatgctggaggaagag 468
           ||||||||| | || ||||| || ||| || ||||||||||| |||||||||||||||||
Sbjct: 289 tctggtcctaccgacgaataccgtgcgttaaggaggaagtacctgatgctggaggaagag 230

               
Query: 469 aact 472
           ||||
Sbjct: 229 aact 226



 Score = 58.0 bits (29), Expect = 6e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 523 gaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgt 575
           ||||| || ||| ||||| |||| ||||||||||||||||||||||| |||||
Sbjct: 175 gaggatgaaaagcttgcactgcttgatcagcttgttgtcttggaaggccttgt 123
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>gb|AY106496.1| Zea mays PCO121832 mRNA sequence
          Length = 748

 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 409 tctggtcctgcagatgaatatcgggcgctacggaggaagtacatgatgctggaggaagag 468
           ||||||||| | || ||||| || ||| || ||||||||||| |||||||||||||||||
Sbjct: 359 tctggtcctaccgacgaataccgtgcgttaaggaggaagtacctgatgctggaggaagag 418

               
Query: 469 aact 472
           ||||
Sbjct: 419 aact 422



 Score = 58.0 bits (29), Expect = 6e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 523 gaggacgagaagtttgcattgctggatcagcttgttgtcttggaaggtcttgt 575
           ||||| || ||| ||||| |||| ||||||||||||||||||||||| |||||
Sbjct: 473 gaggatgaaaagcttgcactgcttgatcagcttgttgtcttggaaggccttgt 525
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>emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on chromosome X, complete
             sequence
          Length = 76552

 Score = 48.1 bits (24), Expect = 0.053
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 790   tatttgtgcaggatgaaggagaatgata 817
             ||||||| ||||||||||||||||||||
Sbjct: 44088 tatttgtacaggatgaaggagaatgata 44061
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>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0061D06,
              complete sequence
          Length = 172126

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 87     ggcgcggcagcgagcggccggt 108
              ||||||||||||||||||||||
Sbjct: 112866 ggcgcggcagcgagcggccggt 112887
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>emb|AJ746198.1| Lettuce necrotic yellows virus N gene for nucleocapsid protein,
            genomic RNA, isolate 9
          Length = 1539

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  tcgacagaatgcaagaccctag 185
            ||||||||||||||||||||||
Sbjct: 1228 tcgacagaatgcaagaccctag 1249
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>emb|AJ746197.1| Lettuce necrotic yellows virus N gene for nucleocapsid protein,
            genomic RNA, isolate 8
          Length = 1538

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  tcgacagaatgcaagaccctag 185
            ||||||||||||||||||||||
Sbjct: 1228 tcgacagaatgcaagaccctag 1249
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>emb|AJ746196.1| Lettuce necrotic yellows virus N gene for nucleocapsid protein,
            genomic RNA, isolate 7
          Length = 1539

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  tcgacagaatgcaagaccctag 185
            ||||||||||||||||||||||
Sbjct: 1228 tcgacagaatgcaagaccctag 1249
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>emb|AJ746193.1| Lettuce necrotic yellows virus N gene for nucleocapsid protein,
            genomic RNA, isolate 4
          Length = 1538

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  tcgacagaatgcaagaccctag 185
            ||||||||||||||||||||||
Sbjct: 1228 tcgacagaatgcaagaccctag 1249
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>emb|AJ746192.1| Lettuce necrotic yellows virus N gene for nucleocapsid protein,
            genomic RNA, isolate 3
          Length = 1539

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  tcgacagaatgcaagaccctag 185
            ||||||||||||||||||||||
Sbjct: 1228 tcgacagaatgcaagaccctag 1249
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>emb|AJ746190.1| Lettuce necrotic yellows virus N gene for nucleocapsid protein,
            genomic RNA, isolate 1
          Length = 1539

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  tcgacagaatgcaagaccctag 185
            ||||||||||||||||||||||
Sbjct: 1228 tcgacagaatgcaagaccctag 1249
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 87      ggcgcggcagcgagcggccggt 108
               ||||||||||||||||||||||
Sbjct: 9636811 ggcgcggcagcgagcggccggt 9636790
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     cgcgggcgcggcagcgagcgg 103
              |||||||||||||||||||||
Sbjct: 326012 cgcgggcgcggcagcgagcgg 326032
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>ref|XM_502825.1| Yarrowia lipolytica CLIB122, YALI0D14520g predicted mRNA
          Length = 1248

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 447 gtacatgatgctggaggaagagaac 471
           |||||||||||||||||||| ||||
Sbjct: 54  gtacatgatgctggaggaagggaac 78
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 447     gtacatgatgctggaggaagagaac 471
               |||||||||||||||||||| ||||
Sbjct: 1770593 gtacatgatgctggaggaagggaac 1770569


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 141,778,664
Number of extensions: 7448673
Number of successful extensions: 157038
Number of sequences better than 10.0: 20
Number of HSP's gapped: 157038
Number of HSP's successfully gapped: 27
Length of query: 875
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 853
Effective length of database: 18,508,616,841
Effective search space: 15787850165373
Effective search space used: 15787850165373
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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