| Clone Name | FLbaf143a17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence Length = 177066 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 823 gtacaatggcgaaatctcggctc 845 ||||||||||||||||||||||| Sbjct: 53125 gtacaatggcgaaatctcggctc 53103
>gb|AC025048.8| Homo sapiens chromosome 17, clone CTD-2319I12, complete sequence Length = 137921 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 823 gtacaatggcgaaatctcggctc 845 ||||||||||||||||||||||| Sbjct: 72608 gtacaatggcgaaatctcggctc 72630
>gb|AC161588.2| Mus musculus BAC clone RP24-447G12 from chromosome 13, complete sequence Length = 211917 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1223 gatgaaaccaaatatttgcattc 1245 ||||||||||||||||||||||| Sbjct: 110615 gatgaaaccaaatatttgcattc 110637
>gb|AY924304.1| Triticum aestivum serine/threonine protein kinase gene, complete cds Length = 1525 Score = 46.1 bits (23), Expect = 0.35 Identities = 32/35 (91%) Strand = Plus / Plus Query: 833 gaaatctcggctcggtcagacatatatagtttagg 867 |||| |||||| | ||||||||||||||||||||| Sbjct: 1043 gaaacctcggcccagtcagacatatatagtttagg 1077 Score = 44.1 bits (22), Expect = 1.4 Identities = 43/50 (86%) Strand = Plus / Plus Query: 522 tctgctatgaatacttgcctaaggggagccttcacaataatctttttggt 571 |||| |||||||| || || || ||||||||||| || |||||||||||| Sbjct: 511 tctgttatgaatatttacccaatgggagccttcaaaagaatctttttggt 560
>gb|AC005702.1|AC005702 Homo sapiens chromosome 17, clone hRPK.178_C_3, complete sequence Length = 147686 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 823 gtacaatggcgaaatctcggctc 845 ||||||||||||||||||||||| Sbjct: 42630 gtacaatggcgaaatctcggctc 42652
>gb|AF036693.1| Caenorhabditis elegans cosmid C49A9, complete sequence Length = 32061 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 552 ttcacaataatctttttggtga 573 |||||||||||||||||||||| Sbjct: 13503 ttcacaataatctttttggtga 13524
>gb|AC130835.3| Mus musculus BAC clone RP24-132F18 from chromosome 19, complete sequence Length = 170078 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 tattcatctcagatctgaagtt 64 |||||||||||||||||||||| Sbjct: 104870 tattcatctcagatctgaagtt 104891
>ref|NM_068531.2| Caenorhabditis elegans C49A9.6 (C49A9.6) mRNA, complete cds Length = 1278 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 552 ttcacaataatctttttggtga 573 |||||||||||||||||||||| Sbjct: 299 ttcacaataatctttttggtga 320
>gb|AC104423.4| Homo sapiens chromosome 18, clone RP11-1136J12, complete sequence Length = 165451 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1272 ataaataagaaaagtattaatg 1293 |||||||||||||||||||||| Sbjct: 93104 ataaataagaaaagtattaatg 93083
>gb|AC090423.11| Homo sapiens Xp BAC RP11-86G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104901 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 610 aataaagggaatatgtgaaggt 631 |||||||||||||||||||||| Sbjct: 52486 aataaagggaatatgtgaaggt 52507
>gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complete sequence Length = 114421 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1273 taaataagaaaagtattaatgaaaag 1298 |||| ||||||||||||||||||||| Sbjct: 49358 taaagaagaaaagtattaatgaaaag 49333
>gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, complete sequence Length = 197255 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1273 taaataagaaaagtattaatgaaaag 1298 |||| ||||||||||||||||||||| Sbjct: 68914 taaagaagaaaagtattaatgaaaag 68939
>gb|AY170840.1| Axonopus compressus serine/threonine protein kinase mRNA, partial cds Length = 345 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 847 gtcagacatatatagtttaggc 868 |||||||||||||||||||||| Sbjct: 51 gtcagacatatatagtttaggc 72
>gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, complete sequence Length = 180016 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1272 ataaataagaaaagtattaatg 1293 |||||||||||||||||||||| Sbjct: 167916 ataaataagaaaagtattaatg 167937
>gb|AC191656.2| Trichinella spiralis BAC clone TS195-10H12 from chromosome unknown, complete sequence Length = 138882 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 740 tcgagaatattcggccaagat 760 ||||||||||||||||||||| Sbjct: 105059 tcgagaatattcggccaagat 105079
>emb|CT027805.6| Zebrafish DNA sequence from clone CH211-212M6 in linkage group 15, complete sequence Length = 197979 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1333 agttgcaaatatatttagttttact 1357 |||||||||||||||| |||||||| Sbjct: 76939 agttgcaaatatattttgttttact 76915
>gb|AC187043.1| Trichinella spiralis chromosome UNK clone TS195-32H12, complete sequence Length = 123053 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 740 tcgagaatattcggccaagat 760 ||||||||||||||||||||| Sbjct: 84331 tcgagaatattcggccaagat 84351
>ref|NM_001076437.1| Bos taurus hypothetical protein LOC616908 (LOC616908), mRNA gb|BC114744.1| Bos taurus hypothetical protein LOC616908, mRNA (cDNA clone MGC:137927 IMAGE:8083369), complete cds Length = 3575 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1339 aaatatatttagttttacttt 1359 ||||||||||||||||||||| Sbjct: 3536 aaatatatttagttttacttt 3516
>ref|NM_118453.1| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase (AT4G23240) mRNA, complete cds Length = 1059 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 708 atatgaaaccgaaaattgcggattttggt 736 ||||||| |||||||| |||||||||||| Sbjct: 482 atatgaacccgaaaatcgcggattttggt 510
>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence Length = 195652 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 823 gtacaatggcgaaatctcggctcgg 847 ||||||||||| ||||||||||||| Sbjct: 45711 gtacaatggcgcaatctcggctcgg 45735
>gb|AC091907.4| Homo sapiens chromosome 5 clone RP11-195C11, complete sequence Length = 150401 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 630 gtatacattttctacatacct 650 ||||||||||||||||||||| Sbjct: 56740 gtatacattttctacatacct 56720
>gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome 12, complete sequence Length = 215692 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 gtggggtggttgctgtgaagaaact 348 ||||||| ||||||||||||||||| Sbjct: 87427 gtggggtcgttgctgtgaagaaact 87451
>emb|Z73121.1|SCYLL016W S.cerevisiae chromosome XII reading frame ORF YLL016w Length = 3886 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1224 atgaaaccaaatatttgcatt 1244 ||||||||||||||||||||| Sbjct: 592 atgaaaccaaatatttgcatt 572
>emb|X97560.1|SC32KBF S.cerevisiae 32kb DNA fragment of chromosome XII, left arm Length = 32088 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1224 atgaaaccaaatatttgcatt 1244 ||||||||||||||||||||| Sbjct: 22272 atgaaaccaaatatttgcatt 22252
>emb|X91488.1|SCCEN12RG S.cerevisiae DNA from CEN12 region including ATS/APSG, SCD25, SOF1, DRS1, MMM1 and DNM1 genes Length = 43676 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1224 atgaaaccaaatatttgcatt 1244 ||||||||||||||||||||| Sbjct: 1805 atgaaaccaaatatttgcatt 1785
>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59 Length = 199199 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 708 atatgaaaccgaaaattgcggattttggt 736 ||||||| |||||||| |||||||||||| Sbjct: 14842 atatgaacccgaaaatcgcggattttggt 14814
>emb|AL022347.1|ATF21P8 Arabidopsis thaliana DNA chromosome 4, BAC clone F21P8 (ESSA project) Length = 85785 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 708 atatgaaaccgaaaattgcggattttggt 736 ||||||| |||||||| |||||||||||| Sbjct: 49196 atatgaacccgaaaatcgcggattttggt 49168
>gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, complete sequence Length = 172344 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1187 ataaagtaaaataagatcaat 1207 ||||||||||||||||||||| Sbjct: 156111 ataaagtaaaataagatcaat 156091
>gb|M26647.1|YSCSDC25 Saccharomyces cerevisiae SDC25 gene, complete cds Length = 5064 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1224 atgaaaccaaatatttgcatt 1244 ||||||||||||||||||||| Sbjct: 1033 atgaaaccaaatatttgcatt 1013
>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete sequence Length = 223754 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1220 gatgatgaaaccaaatatttgcatt 1244 ||||||||||||||||| ||||||| Sbjct: 30745 gatgatgaaaccaaataattgcatt 30721
>emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 in linkage group 5, complete sequence Length = 167182 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1220 gatgatgaaaccaaatatttgcatt 1244 ||||||||||||||||| ||||||| Sbjct: 67199 gatgatgaaaccaaataattgcatt 67175
>gb|AC154658.2| Mus musculus BAC clone RP23-155K19 from 9, complete sequence Length = 205427 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 944 gatggagtaaaagaaaattgg 964 ||||||||||||||||||||| Sbjct: 155213 gatggagtaaaagaaaattgg 155193
>emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, complete sequence Length = 176982 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1224 atgaaaccaaatatttgcatt 1244 ||||||||||||||||||||| Sbjct: 90882 atgaaaccaaatatttgcatt 90862
>emb|AL831706.19| Mouse DNA sequence from clone RP23-74B12 on chromosome 2, complete sequence Length = 193178 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 958 aaattggacactggagaaaat 978 ||||||||||||||||||||| Sbjct: 186593 aaattggacactggagaaaat 186613 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 286,554,388 Number of extensions: 15996909 Number of successful extensions: 326289 Number of sequences better than 10.0: 34 Number of HSP's gapped: 326289 Number of HSP's successfully gapped: 35 Length of query: 1434 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1411 Effective length of database: 18,503,978,556 Effective search space: 26109113742516 Effective search space used: 26109113742516 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)