ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf142o03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001052255.1| Oryza sativa (japonica cultivar-group) Os02g0121700 (Os02g0121700) mRNA, complete cds Length = 2037 Score = 202 bits (102), Expect = 4e-48 Identities = 198/230 (86%) Strand = Plus / Plus Query: 702 aaatcttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgca 761 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||| || Sbjct: 742 aaatcttgcaagatatgtgaggcagtcgctggatcatccctaccatgtcagcctgaatca 801 Query: 762 gtacaaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaat 821 ||||||||| || ||||| || ||||| || |||| |||||| | ||| |||||| || Sbjct: 802 gtacaaggccaggcaccatctcagctacctccagaccttgcctatccggtgcactgccat 861 Query: 822 ggaggaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 |||||| || ||||| |||||||||||||| |||||| | | ||||||||||| ||||| Sbjct: 862 ggaggagctcgcacttgcagacttccagctcaacaagctactccatcagatggagatgca 921 Query: 882 agaggttaagagatggtggatgggcctgggattggctcaagaaataccag 931 ||| | || ||||||||||||| |||||||||||||||||||||||||| Sbjct: 922 ggagatcaaaagatggtggatggacctgggattggctcaagaaataccag 971 Score = 111 bits (56), Expect = 1e-20 Identities = 149/180 (82%) Strand = Plus / Plus Query: 1091 gcttcaccgaggcaatcaaaatgtgggatcttgcagctgctgcgtcacttccaagctaca 1150 ||||||| ||||||||| ||||||||| ||||||||||||| || | || |||| || Sbjct: 1131 gcttcactcaggcaatcagaatgtgggaccttgcagctgctgattccttacctagctgca 1190 Query: 1151 tgagatcatgctacagtgctctttatacaatcacaaatgacatcgcagatatggctgaaa 1210 |||||||||||| ||| ||||| | ||| | |||||||||||||||||||||| || | Sbjct: 1191 tgagatcatgcttcagggctctacacacagttacaaatgacatcgcagatatggtcgaga 1250 Query: 1211 gagaacatgggttgaaccctattgatcatctcaaaaaagattggacaatgctttttgatg 1270 |||||||||| | |||||||| ||||||| || |||| |||| ||||||| ||||||| Sbjct: 1251 gagaacatggagtaaaccctatcaatcatctgaagaaagcttgggcaatgctgtttgatg 1310 Score = 109 bits (55), Expect = 4e-20 Identities = 171/211 (81%), Gaps = 9/211 (4%) Strand = Plus / Plus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 1474 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 1533 Query: 1497 tgccaaggacgaagcgcaagatggcctggacggatcatacaaggagttgtacctaaaaga 1556 ||||||||| || || ||||| || |||||||||| ||||||||| | ||||| || || Sbjct: 1534 tgccaaggatgaggcacaagaaggattggacggatcgtacaaggagctatacctcaagga 1593 Query: 1557 gaacc---------ccggtggcaacgcggaggggcacatgcgggcgctgatcgggagtga 1607 ||||| ||| |||| | ||||||| |||| ||||| |||||||| | | || Sbjct: 1594 gaacccggggctcgccgctggcgaggcggaggagcacgtgcggcggctgatcgcgggcga 1653 Query: 1608 gtgggaggagctcaacagagagtgcttctcc 1638 |||||||||||||||| | |||||||||||| Sbjct: 1654 gtgggaggagctcaaccgggagtgcttctcc 1684 Score = 67.9 bits (34), Expect = 1e-07 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatggg---agaagca 636 |||||||||||||| |||||| |||| |||||||||||| ||||||| || |||||| Sbjct: 617 gacatcagagggttactcagcctgcaagacatatcacacatgaacattggacaagaagcc 676 Query: 637 tcactgtacaaggcaaatgacttctcaa 664 ||||| | ||||||||| || ||||||| Sbjct: 677 tcactctgcaaggcaaaggagttctcaa 704 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||||| |||||||||||| |||||||| |||||||| ||| ||||||| | || Sbjct: 396 tcgaccacctcaggcgcctctgcatggaccactacttccaagacgaggtcgacgacgcca 455 Query: 425 tgga 428 |||| Sbjct: 456 tgga 459 Score = 42.1 bits (21), Expect = 7.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 491 tgagagaagctggacatgatatttcagcagatgaggttctt 531 ||||||||||||| || || | |||||||||||||||||| Sbjct: 528 tgagagaagctggccaccatgtctcagcagatgaggttctt 568
>dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full insert sequence Length = 2037 Score = 202 bits (102), Expect = 4e-48 Identities = 198/230 (86%) Strand = Plus / Plus Query: 702 aaatcttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgca 761 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||| || Sbjct: 742 aaatcttgcaagatatgtgaggcagtcgctggatcatccctaccatgtcagcctgaatca 801 Query: 762 gtacaaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaat 821 ||||||||| || ||||| || ||||| || |||| |||||| | ||| |||||| || Sbjct: 802 gtacaaggccaggcaccatctcagctacctccagaccttgcctatccggtgcactgccat 861 Query: 822 ggaggaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 |||||| || ||||| |||||||||||||| |||||| | | ||||||||||| ||||| Sbjct: 862 ggaggagctcgcacttgcagacttccagctcaacaagctactccatcagatggagatgca 921 Query: 882 agaggttaagagatggtggatgggcctgggattggctcaagaaataccag 931 ||| | || ||||||||||||| |||||||||||||||||||||||||| Sbjct: 922 ggagatcaaaagatggtggatggacctgggattggctcaagaaataccag 971 Score = 111 bits (56), Expect = 1e-20 Identities = 149/180 (82%) Strand = Plus / Plus Query: 1091 gcttcaccgaggcaatcaaaatgtgggatcttgcagctgctgcgtcacttccaagctaca 1150 ||||||| ||||||||| ||||||||| ||||||||||||| || | || |||| || Sbjct: 1131 gcttcactcaggcaatcagaatgtgggaccttgcagctgctgattccttacctagctgca 1190 Query: 1151 tgagatcatgctacagtgctctttatacaatcacaaatgacatcgcagatatggctgaaa 1210 |||||||||||| ||| ||||| | ||| | |||||||||||||||||||||| || | Sbjct: 1191 tgagatcatgcttcagggctctacacacagttacaaatgacatcgcagatatggtcgaga 1250 Query: 1211 gagaacatgggttgaaccctattgatcatctcaaaaaagattggacaatgctttttgatg 1270 |||||||||| | |||||||| ||||||| || |||| |||| ||||||| ||||||| Sbjct: 1251 gagaacatggagtaaaccctatcaatcatctgaagaaagcttgggcaatgctgtttgatg 1310 Score = 109 bits (55), Expect = 4e-20 Identities = 171/211 (81%), Gaps = 9/211 (4%) Strand = Plus / Plus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 1474 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 1533 Query: 1497 tgccaaggacgaagcgcaagatggcctggacggatcatacaaggagttgtacctaaaaga 1556 ||||||||| || || ||||| || |||||||||| ||||||||| | ||||| || || Sbjct: 1534 tgccaaggatgaggcacaagaaggattggacggatcgtacaaggagctatacctcaagga 1593 Query: 1557 gaacc---------ccggtggcaacgcggaggggcacatgcgggcgctgatcgggagtga 1607 ||||| ||| |||| | ||||||| |||| ||||| |||||||| | | || Sbjct: 1594 gaacccggggctcgccgctggcgaggcggaggagcacgtgcggcggctgatcgcgggcga 1653 Query: 1608 gtgggaggagctcaacagagagtgcttctcc 1638 |||||||||||||||| | |||||||||||| Sbjct: 1654 gtgggaggagctcaaccgggagtgcttctcc 1684 Score = 67.9 bits (34), Expect = 1e-07 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatggg---agaagca 636 |||||||||||||| |||||| |||| |||||||||||| ||||||| || |||||| Sbjct: 617 gacatcagagggttactcagcctgcaagacatatcacacatgaacattggacaagaagcc 676 Query: 637 tcactgtacaaggcaaatgacttctcaa 664 ||||| | ||||||||| || ||||||| Sbjct: 677 tcactctgcaaggcaaaggagttctcaa 704 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||||| |||||||||||| |||||||| |||||||| ||| ||||||| | || Sbjct: 396 tcgaccacctcaggcgcctctgcatggaccactacttccaagacgaggtcgacgacgcca 455 Query: 425 tgga 428 |||| Sbjct: 456 tgga 459 Score = 42.1 bits (21), Expect = 7.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 491 tgagagaagctggacatgatatttcagcagatgaggttctt 531 ||||||||||||| || || | |||||||||||||||||| Sbjct: 528 tgagagaagctggccaccatgtctcagcagatgaggttctt 568
>emb|CT837838.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN091D01, full insert sequence Length = 1555 Score = 186 bits (94), Expect = 2e-43 Identities = 193/226 (85%) Strand = Plus / Plus Query: 706 cttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgcagtac 765 |||||||||||||||||||| |||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 800 cttgcaagatatgtgaggcagtcactggaacatccctaccatgtcagcttgatgcagtac 859 Query: 766 aaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaatggag 825 ||||| || |||||||| ||||| || |||| |||||||| || |||||||||||| Sbjct: 860 aaggccaggcaccacctcagctacctgcagaccttgcccatcaggtgcactgcaatggaa 919 Query: 826 gaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgcaagag 885 || || || || ||||||||| |||| |||||| ||| |||||||||||||||||| ||| Sbjct: 920 gagcttgctcttgcagacttcaagctgaacaagctgctgcatcagatggaaatgcaggag 979 Query: 886 gttaagagatggtggatgggcctgggattggctcaagaaataccag 931 | || |||||||||||| | ||||||||||||| |||||||||| Sbjct: 980 atcaaaagatggtggatgaacttgggattggctcaggaaataccag 1025 Score = 93.7 bits (47), Expect = 2e-15 Identities = 182/227 (80%) Strand = Plus / Plus Query: 991 tccttctccagataccggattgagatcaccaaaatcatcgcaattgtcagtattgtggat 1050 |||||||||||||||||||||||| |||| || ||| | | ||||| ||| ||||| Sbjct: 1085 tccttctccagataccggattgagctcacaaagatcgcctcctttgtctacattatggat 1144 Query: 1051 gacatctttgatgttattgcaacacaagaggaactttctcgcttcaccgaggcaatcaaa 1110 |||||||||||| || | ||||||||||| | || ||||||| ||||||||||| Sbjct: 1145 gacatctttgatcttgtcagcacacaagaggagcgctcctgcttcacacaggcaatcaaa 1204 Query: 1111 atgtgggatcttgcagctgctgcgtcacttccaagctacatgagatcatgctacagtgct 1170 |||||||| |||||||||||| || | || |||| |||||| ||||||||||| ||| Sbjct: 1205 atgtgggactttgcagctgctgattccttgcctagctgcatgaggtcatgctacagggct 1264 Query: 1171 ctttatacaatcacaaatgacatcgcagatatggctgaaagagaaca 1217 |||| || | |||||||| ||||||||||||| || |||||||| Sbjct: 1265 atttacactgttacaaatgatatcgcagatatggtcgagagagaaca 1311 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||| ||||||||||||||||||||||| ||||| || ||| |||||| | || Sbjct: 453 tcgaccacctgaagcgcctctgcatcgaccactacttccaggacgaggtcgacggcgcca 512 Query: 425 tggatgc 431 ||||||| Sbjct: 513 tggatgc 519 Score = 56.0 bits (28), Expect = 5e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatgggag 631 |||||||||||| | |||||| |||| |||||||||||| ||||||| |||| Sbjct: 671 gacatcagagggctactcagcctgcaagacatatcacacatgaacataggag 722
>ref|NM_001071453.1| Oryza sativa (japonica cultivar-group) Os10g0489500 (Os10g0489500) mRNA, complete cds Length = 1959 Score = 186 bits (94), Expect = 2e-43 Identities = 193/226 (85%) Strand = Plus / Plus Query: 706 cttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgcagtac 765 |||||||||||||||||||| |||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 532 cttgcaagatatgtgaggcagtcactggaacatccctaccatgtcagcttgatgcagtac 591 Query: 766 aaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaatggag 825 ||||| || |||||||| ||||| || |||| ||||||||| || |||||||||||| Sbjct: 592 aaggccaggcaccacctcagctacctgcagaccttgcccaccaggtgcactgcaatggaa 651 Query: 826 gaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgcaagag 885 || || || || ||| ||||| |||| |||||| ||| |||||||||||||||||| ||| Sbjct: 652 gagcttgctcttgcaaacttcaagctgaacaagctgctgcatcagatggaaatgcaggag 711 Query: 886 gttaagagatggtggatgggcctgggattggctcaagaaataccag 931 | || |||||||||||| | ||||||||||||| |||||||||| Sbjct: 712 atcaaaagatggtggatgaacttgggattggctcaggaaataccag 757 Score = 99.6 bits (50), Expect = 4e-17 Identities = 242/306 (79%) Strand = Plus / Plus Query: 991 tccttctccagataccggattgagatcaccaaaatcatcgcaattgtcagtattgtggat 1050 |||||||||||||||||||||||| |||| || ||| | | ||||| ||| ||||| Sbjct: 817 tccttctccagataccggattgagctcacaaagatcgcctcctttgtctacattatggat 876 Query: 1051 gacatctttgatgttattgcaacacaagaggaactttctcgcttcaccgaggcaatcaaa 1110 |||||||||||| || | ||||||||||| | || ||||||| ||||||||||| Sbjct: 877 gacatctttgatcttgtcagcacacaagaggagcgctcctgcttcacacaggcaatcaaa 936 Query: 1111 atgtgggatcttgcagctgctgcgtcacttccaagctacatgagatcatgctacagtgct 1170 |||||||| |||||||||||| || | || |||| |||||| ||||||||||| ||| Sbjct: 937 atgtgggactttgcagctgctgattccttgcctagctgcatgaggtcatgctacagggct 996 Query: 1171 ctttatacaatcacaaatgacatcgcagatatggctgaaagagaacatgggttgaaccct 1230 |||| || | |||||||| ||||||||||||| || |||||||| || | |||||| Sbjct: 997 atttacactgttacaaatgatatcgcagatatggtcgagagagaacacggagtaaaccct 1056 Query: 1231 attgatcatctcaaaaaagattggacaatgctttttgatgcatttttgcttgaggcgaaa 1290 || ||||| | || |||| |||| || |||| ||||||| ||| || |||||| ||| Sbjct: 1057 atcaatcatttgaagaaagcttgggcagtgctgtttgatggattaatgactgaggcaaaa 1116 Query: 1291 tggttg 1296 |||||| Sbjct: 1117 tggttg 1122 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||| ||||||||||||||||||||||| ||||| || ||| |||||| | || Sbjct: 185 tcgaccacctgaagcgcctctgcatcgaccactacttccaggacgaggtcgacggcgcca 244 Query: 425 tggatgc 431 ||||||| Sbjct: 245 tggatgc 251 Score = 56.0 bits (28), Expect = 5e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatgggag 631 |||||||||||| | |||||| |||| |||||||||||| ||||||| |||| Sbjct: 403 gacatcagagggctactcagcctgcaagacatatcacacatgaacataggag 454 Score = 50.1 bits (25), Expect = 0.032 Identities = 58/69 (84%) Strand = Plus / Plus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 1248 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 1307 Query: 1497 tgccaagga 1505 |||||||| Sbjct: 1308 cgccaagga 1316 Score = 48.1 bits (24), Expect = 0.13 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1523 tggacggatcatacaaggagttgtacct 1550 |||| ||||||||||||||||||||||| Sbjct: 1322 tggatggatcatacaaggagttgtacct 1349
>gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence Length = 58734 Score = 151 bits (76), Expect = 1e-32 Identities = 151/176 (85%) Strand = Plus / Minus Query: 706 cttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgcagtac 765 |||||||||||||||||||| |||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 31992 cttgcaagatatgtgaggcagtcactggaacatccctaccatgtcagcttgatgcagtac 31933 Query: 766 aaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaatggag 825 ||||| || |||||||| ||||| || |||| ||||||||| || |||||||||||| Sbjct: 31932 aaggccaggcaccacctcagctacctgcagaccttgcccaccaggtgcactgcaatggaa 31873 Query: 826 gaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 || || || || ||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct: 31872 gagcttgctcttgcaaacttcaagctgaacaagctgctgcatcagatggaaatgca 31817 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||| ||||||||||||||||||||||| ||||| || ||| |||||| | || Sbjct: 32670 tcgaccacctgaagcgcctctgcatcgaccactacttccaggacgaggtcgacggcgcca 32611 Query: 425 tggatgc 431 ||||||| Sbjct: 32610 tggatgc 32604 Score = 56.0 bits (28), Expect = 5e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatgggag 631 |||||||||||| | |||||| |||| |||||||||||| ||||||| |||| Sbjct: 32121 gacatcagagggctactcagcctgcaagacatatcacacatgaacataggag 32070 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Minus Query: 1144 agctacatgagatcatgctacagtgctctttatacaatcacaaatgacatcgcagatatg 1203 |||| |||||| ||||||||||| ||| |||| || | |||||||| |||||||||||| Sbjct: 30808 agctgcatgaggtcatgctacagggctatttacactgttacaaatgatatcgcagatatg 30749 Query: 1204 gctgaaagagaaca 1217 | || |||||||| Sbjct: 30748 gtcgagagagaaca 30735 Score = 50.1 bits (25), Expect = 0.032 Identities = 28/29 (96%) Strand = Plus / Minus Query: 991 tccttctccagataccggattgagatcac 1019 |||||||||||||||||||||||| |||| Sbjct: 31089 tccttctccagataccggattgagctcac 31061 Score = 48.1 bits (24), Expect = 0.13 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1523 tggacggatcatacaaggagttgtacct 1550 |||| ||||||||||||||||||||||| Sbjct: 29917 tggatggatcatacaaggagttgtacct 29890 Score = 48.1 bits (24), Expect = 0.13 Identities = 57/68 (83%) Strand = Plus / Minus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 30276 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 30217 Query: 1497 tgccaagg 1504 ||||||| Sbjct: 30216 cgccaagg 30209 Score = 48.1 bits (24), Expect = 0.13 Identities = 36/40 (90%) Strand = Plus / Minus Query: 892 agatggtggatgggcctgggattggctcaagaaataccag 931 |||||||||||| | ||||||||||||| |||||||||| Sbjct: 31188 agatggtggatgaacttgggattggctcaggaaataccag 31149
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 151 bits (76), Expect = 1e-32 Identities = 151/176 (85%) Strand = Plus / Minus Query: 706 cttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgcagtac 765 |||||||||||||||||||| |||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 18059859 cttgcaagatatgtgaggcagtcactggaacatccctaccatgtcagcttgatgcagtac 18059800 Query: 766 aaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaatggag 825 ||||| || |||||||| ||||| || |||| ||||||||| || |||||||||||| Sbjct: 18059799 aaggccaggcaccacctcagctacctgcagaccttgcccaccaggtgcactgcaatggaa 18059740 Query: 826 gaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 || || || || ||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct: 18059739 gagcttgctcttgcaaacttcaagctgaacaagctgctgcatcagatggaaatgca 18059684 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||| ||||||||||||||||||||||| ||||| || ||| |||||| | || Sbjct: 18060537 tcgaccacctgaagcgcctctgcatcgaccactacttccaggacgaggtcgacggcgcca 18060478 Query: 425 tggatgc 431 ||||||| Sbjct: 18060477 tggatgc 18060471 Score = 56.0 bits (28), Expect = 5e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatgggag 631 |||||||||||| | |||||| |||| |||||||||||| ||||||| |||| Sbjct: 18059988 gacatcagagggctactcagcctgcaagacatatcacacatgaacataggag 18059937 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Minus Query: 1144 agctacatgagatcatgctacagtgctctttatacaatcacaaatgacatcgcagatatg 1203 |||| |||||| ||||||||||| ||| |||| || | |||||||| |||||||||||| Sbjct: 18058675 agctgcatgaggtcatgctacagggctatttacactgttacaaatgatatcgcagatatg 18058616 Query: 1204 gctgaaagagaaca 1217 | || |||||||| Sbjct: 18058615 gtcgagagagaaca 18058602 Score = 50.1 bits (25), Expect = 0.032 Identities = 28/29 (96%) Strand = Plus / Minus Query: 991 tccttctccagataccggattgagatcac 1019 |||||||||||||||||||||||| |||| Sbjct: 18058956 tccttctccagataccggattgagctcac 18058928 Score = 48.1 bits (24), Expect = 0.13 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1523 tggacggatcatacaaggagttgtacct 1550 |||| ||||||||||||||||||||||| Sbjct: 18057784 tggatggatcatacaaggagttgtacct 18057757 Score = 48.1 bits (24), Expect = 0.13 Identities = 57/68 (83%) Strand = Plus / Minus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 18058143 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 18058084 Query: 1497 tgccaagg 1504 ||||||| Sbjct: 18058083 cgccaagg 18058076 Score = 48.1 bits (24), Expect = 0.13 Identities = 36/40 (90%) Strand = Plus / Minus Query: 892 agatggtggatgggcctgggattggctcaagaaataccag 931 |||||||||||| | ||||||||||||| |||||||||| Sbjct: 18059055 agatggtggatgaacttgggattggctcaggaaataccag 18059016
>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence Length = 129585 Score = 151 bits (76), Expect = 1e-32 Identities = 151/176 (85%) Strand = Plus / Plus Query: 706 cttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgcagtac 765 |||||||||||||||||||| |||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 1174 cttgcaagatatgtgaggcagtcactggaacatccctaccatgtcagcttgatgcagtac 1233 Query: 766 aaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaatggag 825 ||||| || |||||||| ||||| || |||| ||||||||| || |||||||||||| Sbjct: 1234 aaggccaggcaccacctcagctacctgcagaccttgcccaccaggtgcactgcaatggaa 1293 Query: 826 gaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 || || || || ||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct: 1294 gagcttgctcttgcaaacttcaagctgaacaagctgctgcatcagatggaaatgca 1349 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||| ||||||||||||||||||||||| ||||| || ||| |||||| | || Sbjct: 496 tcgaccacctgaagcgcctctgcatcgaccactacttccaggacgaggtcgacggcgcca 555 Query: 425 tggatgc 431 ||||||| Sbjct: 556 tggatgc 562 Score = 56.0 bits (28), Expect = 5e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatgggag 631 |||||||||||| | |||||| |||| |||||||||||| ||||||| |||| Sbjct: 1045 gacatcagagggctactcagcctgcaagacatatcacacatgaacataggag 1096 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Plus Query: 1144 agctacatgagatcatgctacagtgctctttatacaatcacaaatgacatcgcagatatg 1203 |||| |||||| ||||||||||| ||| |||| || | |||||||| |||||||||||| Sbjct: 2358 agctgcatgaggtcatgctacagggctatttacactgttacaaatgatatcgcagatatg 2417 Query: 1204 gctgaaagagaaca 1217 | || |||||||| Sbjct: 2418 gtcgagagagaaca 2431 Score = 50.1 bits (25), Expect = 0.032 Identities = 28/29 (96%) Strand = Plus / Plus Query: 991 tccttctccagataccggattgagatcac 1019 |||||||||||||||||||||||| |||| Sbjct: 2077 tccttctccagataccggattgagctcac 2105 Score = 48.1 bits (24), Expect = 0.13 Identities = 36/40 (90%) Strand = Plus / Plus Query: 892 agatggtggatgggcctgggattggctcaagaaataccag 931 |||||||||||| | ||||||||||||| |||||||||| Sbjct: 1978 agatggtggatgaacttgggattggctcaggaaataccag 2017 Score = 48.1 bits (24), Expect = 0.13 Identities = 57/68 (83%) Strand = Plus / Plus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 2890 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 2949 Query: 1497 tgccaagg 1504 ||||||| Sbjct: 2950 cgccaagg 2957 Score = 48.1 bits (24), Expect = 0.13 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1523 tggacggatcatacaaggagttgtacct 1550 |||| ||||||||||||||||||||||| Sbjct: 3249 tggatggatcatacaaggagttgtacct 3276
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 143 bits (72), Expect = 3e-30 Identities = 153/180 (85%) Strand = Plus / Plus Query: 702 aaatcttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgca 761 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||| || Sbjct: 1147493 aaatcttgcaagatatgtgaggcagtcgctggatcatccctaccatgtcagcctgaatca 1147552 Query: 762 gtacaaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaat 821 ||||||||| || ||||| || ||||| || |||| |||||| | ||| |||||| || Sbjct: 1147553 gtacaaggccaggcaccatctcagctacctccagaccttgcctatccggtgcactgccat 1147612 Query: 822 ggaggaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 |||||| || ||||| |||||||||||||| |||||| | | ||||||||||| ||||| Sbjct: 1147613 ggaggagctcgcacttgcagacttccagctcaacaagctactccatcagatggagatgca 1147672 Score = 73.8 bits (37), Expect = 2e-09 Identities = 106/129 (82%) Strand = Plus / Plus Query: 1113 gtgggatcttgcagctgctgcgtcacttccaagctacatgagatcatgctacagtgctct 1172 |||||| ||||||||||||| || | || |||| |||||||||||||| ||| ||||| Sbjct: 1149572 gtgggaccttgcagctgctgattccttacctagctgcatgagatcatgcttcagggctct 1149631 Query: 1173 ttatacaatcacaaatgacatcgcagatatggctgaaagagaacatgggttgaaccctat 1232 | ||| | |||||||||||||||||||||| || ||||||||||| | |||||||| Sbjct: 1149632 acacacagttacaaatgacatcgcagatatggtcgagagagaacatggagtaaaccctat 1149691 Query: 1233 tgatcatct 1241 ||||||| Sbjct: 1149692 caatcatct 1149700 Score = 71.9 bits (36), Expect = 9e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 892 agatggtggatgggcctgggattggctcaagaaataccag 931 ||||||||||||| |||||||||||||||||||||||||| Sbjct: 1149019 agatggtggatggacctgggattggctcaagaaataccag 1149058 Score = 71.9 bits (36), Expect = 9e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 1150026 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 1150085 Query: 1497 tgccaagg 1504 |||||||| Sbjct: 1150086 tgccaagg 1150093 Score = 67.9 bits (34), Expect = 1e-07 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatggg---agaagca 636 |||||||||||||| |||||| |||| |||||||||||| ||||||| || |||||| Sbjct: 1147368 gacatcagagggttactcagcctgcaagacatatcacacatgaacattggacaagaagcc 1147427 Query: 637 tcactgtacaaggcaaatgacttctcaa 664 ||||| | ||||||||| || ||||||| Sbjct: 1147428 tcactctgcaaggcaaaggagttctcaa 1147455 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||||| |||||||||||| |||||||| |||||||| ||| ||||||| | || Sbjct: 1146794 tcgaccacctcaggcgcctctgcatggaccactacttccaagacgaggtcgacgacgcca 1146853 Query: 425 tgga 428 |||| Sbjct: 1146854 tgga 1146857 Score = 60.0 bits (30), Expect = 3e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 1573 gcggaggggcacatgcgggcgctgatcgggagtgagtgggaggagctcaacagagagtgc 1632 ||||||| |||| ||||| |||||||| | | |||||||||||||||||| | |||||| Sbjct: 1150634 gcggaggagcacgtgcggcggctgatcgcgggcgagtgggaggagctcaaccgggagtgc 1150693 Query: 1633 ttctcc 1638 |||||| Sbjct: 1150694 ttctcc 1150699
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 143 bits (72), Expect = 3e-30 Identities = 153/180 (85%) Strand = Plus / Plus Query: 702 aaatcttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgca 761 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||| || Sbjct: 100017 aaatcttgcaagatatgtgaggcagtcgctggatcatccctaccatgtcagcctgaatca 100076 Query: 762 gtacaaggctagacaccacctgagctatcttcagagcttgcccactcggaacactgcaat 821 ||||||||| || ||||| || ||||| || |||| |||||| | ||| |||||| || Sbjct: 100077 gtacaaggccaggcaccatctcagctacctccagaccttgcctatccggtgcactgccat 100136 Query: 822 ggaggaactggcactagcagacttccagcttaacaagttgcagcatcagatggaaatgca 881 |||||| || ||||| |||||||||||||| |||||| | | ||||||||||| ||||| Sbjct: 100137 ggaggagctcgcacttgcagacttccagctcaacaagctactccatcagatggagatgca 100196 Score = 73.8 bits (37), Expect = 2e-09 Identities = 106/129 (82%) Strand = Plus / Plus Query: 1113 gtgggatcttgcagctgctgcgtcacttccaagctacatgagatcatgctacagtgctct 1172 |||||| ||||||||||||| || | || |||| |||||||||||||| ||| ||||| Sbjct: 102096 gtgggaccttgcagctgctgattccttacctagctgcatgagatcatgcttcagggctct 102155 Query: 1173 ttatacaatcacaaatgacatcgcagatatggctgaaagagaacatgggttgaaccctat 1232 | ||| | |||||||||||||||||||||| || ||||||||||| | |||||||| Sbjct: 102156 acacacagttacaaatgacatcgcagatatggtcgagagagaacatggagtaaaccctat 102215 Query: 1233 tgatcatct 1241 ||||||| Sbjct: 102216 caatcatct 102224 Score = 71.9 bits (36), Expect = 9e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 892 agatggtggatgggcctgggattggctcaagaaataccag 931 ||||||||||||| |||||||||||||||||||||||||| Sbjct: 101543 agatggtggatggacctgggattggctcaagaaataccag 101582 Score = 71.9 bits (36), Expect = 9e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 1437 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 1496 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 102550 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 102609 Query: 1497 tgccaagg 1504 |||||||| Sbjct: 102610 tgccaagg 102617 Score = 67.9 bits (34), Expect = 1e-07 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatggg---agaagca 636 |||||||||||||| |||||| |||| |||||||||||| ||||||| || |||||| Sbjct: 99892 gacatcagagggttactcagcctgcaagacatatcacacatgaacattggacaagaagcc 99951 Query: 637 tcactgtacaaggcaaatgacttctcaa 664 ||||| | ||||||||| || ||||||| Sbjct: 99952 tcactctgcaaggcaaaggagttctcaa 99979 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||||| |||||||||||| |||||||| |||||||| ||| ||||||| | || Sbjct: 99318 tcgaccacctcaggcgcctctgcatggaccactacttccaagacgaggtcgacgacgcca 99377 Query: 425 tgga 428 |||| Sbjct: 99378 tgga 99381 Score = 60.0 bits (30), Expect = 3e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 1573 gcggaggggcacatgcgggcgctgatcgggagtgagtgggaggagctcaacagagagtgc 1632 ||||||| |||| ||||| |||||||| | | |||||||||||||||||| | |||||| Sbjct: 103158 gcggaggagcacgtgcggcggctgatcgcgggcgagtgggaggagctcaaccgggagtgc 103217 Query: 1633 ttctcc 1638 |||||| Sbjct: 103218 ttctcc 103223
>gb|AC092211.7| Oryza sativa chromosome 10 P0031G09 genomic sequence, complete sequence Length = 17072 Score = 113 bits (57), Expect = 3e-21 Identities = 90/101 (89%) Strand = Plus / Minus Query: 706 cttgcaagatatgtgaggcattcactggatcatccctaccatgtgagcctgacgcagtac 765 |||||||||||||||||||| |||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 103 cttgcaagatatgtgaggcagtcactggaacatccctaccatgtcagcttgatgcagtac 44 Query: 766 aaggctagacaccacctgagctatcttcagagcttgcccac 806 ||||| || |||||||| ||||| || |||| ||||||||| Sbjct: 43 aaggccaggcaccacctcagctacctgcagaccttgcccac 3 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 365 tcgatcacctcaagcgcctctgcatcgaccactatttccaagatgagatcgacgatggca 424 |||| ||||| ||||||||||||||||||||||| ||||| || ||| |||||| | || Sbjct: 781 tcgaccacctgaagcgcctctgcatcgaccactacttccaggacgaggtcgacggcgcca 722 Query: 425 tggatgc 431 ||||||| Sbjct: 721 tggatgc 715 Score = 56.0 bits (28), Expect = 5e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 580 gacatcagagggttgctcagcttgcaggacatatcacacttgaacatgggag 631 |||||||||||| | |||||| |||| |||||||||||| ||||||| |||| Sbjct: 232 gacatcagagggctactcagcctgcaagacatatcacacatgaacataggag 181
>gb|AY928082.1| Zea mays cultivar B73 terpene synthase 3 (TPS3) mRNA, complete cds Length = 1725 Score = 71.9 bits (36), Expect = 9e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 1092 cttcaccgaggcaatcaaaatgtgggatcttgcagctgctgcgtcacttccaagctacat 1151 ||||||||||||| |||||||||||||| ||| ||||||| |||||||| || | ||| Sbjct: 1029 cttcaccgaggcagtcaaaatgtgggatactgcggctgctgattcacttcccagttgcat 1088 Query: 1152 gagatcatgcta 1163 |||||||||||| Sbjct: 1089 gagatcatgcta 1100 Score = 56.0 bits (28), Expect = 5e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 1581 gcacatgcgggcgctgatcgggagtgagtgggaggagctcaacagagagtgcttct 1636 ||||||||| | ||||||| ||| ||||||| |||||||||||| |||||||||| Sbjct: 1533 gcacatgcgcggcctgatcgcgagggagtgggtggagctcaacagggagtgcttct 1588 Score = 54.0 bits (27), Expect = 0.002 Identities = 27/27 (100%) Strand = Plus / Plus Query: 371 acctcaagcgcctctgcatcgaccact 397 ||||||||||||||||||||||||||| Sbjct: 305 acctcaagcgcctctgcatcgaccact 331 Score = 46.1 bits (23), Expect = 0.50 Identities = 62/75 (82%) Strand = Plus / Plus Query: 730 ctggatcatccctaccatgtgagcctgacgcagtacaaggctagacaccacctgagctat 789 ||||| || |||||||| | |||||||||||||||||||| || || ||||| |||| Sbjct: 688 ctggaccacccctaccacctcagcctgacgcagtacaaggccaggcatcacctccgctac 747 Query: 790 cttcagagcttgccc 804 || |||||| ||||| Sbjct: 748 ctgcagagcctgccc 762
>gb|AY505378.1| Hordeum vulgare subsp. vulgare cultivar Oregon Wolfe Barley Dominant genomic sequence corresponding to Ds insertion site in TNP-22 Length = 381 Score = 67.9 bits (34), Expect = 1e-07 Identities = 73/86 (84%) Strand = Plus / Minus Query: 1003 taccggattgagatcaccaaaatcatcgcaattgtcagtattgtggatgacatctttgat 1062 ||||||||||||||||| || |||||| | ||||| |||||||||||||||||||||| Sbjct: 91 taccggattgagatcacaaagatcatctcgtttgtctatattgtggatgacatctttgat 32 Query: 1063 gttattgcaacacaagaggaactttc 1088 || ||| || |||||||| ||||| Sbjct: 31 cttgttggcacccaagaggagctttc 6
>gb|AY928081.1| Zea mays cultivar B73 terpene synthase 2 (TPS2) mRNA, complete cds Length = 1746 Score = 63.9 bits (32), Expect = 2e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 1092 cttcaccgaggcaatcaaaatgtgggatcttgcagctgctgcgtcacttccaagctacat 1151 ||||||||||||| |||||||||||||| || ||||||| |||||||| || | ||| Sbjct: 1050 cttcaccgaggcagtcaaaatgtgggatactgtggctgctgattcacttcccagttgcat 1109 Query: 1152 gagatcatgcta 1163 |||||||||||| Sbjct: 1110 gagatcatgcta 1121 Score = 60.0 bits (30), Expect = 3e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 371 acctcaagcgcctctgcatcgaccactatttccaagatgagatcga 416 |||||||||||||||||||||||||||| ||| | || |||||||| Sbjct: 308 acctcaagcgcctctgcatcgaccactacttcgaggaagagatcga 353 Score = 48.1 bits (24), Expect = 0.13 Identities = 30/32 (93%) Strand = Plus / Plus Query: 991 tccttctccagataccggattgagatcaccaa 1022 |||||||||||||||||| | ||||||||||| Sbjct: 949 tccttctccagataccgggtcgagatcaccaa 980 Score = 46.1 bits (23), Expect = 0.50 Identities = 140/179 (78%) Strand = Plus / Plus Query: 751 agcctgacgcagtacaaggctagacaccacctgagctatcttcagagcttgcccactcgg 810 |||||||||||||||||||| || || ||||| |||| || |||||| ||||| | | Sbjct: 709 agcctgacgcagtacaaggccaggcatcacctccgctacctgcagagcctgccctccaga 768 Query: 811 aacactgcaatggaggaactggcactagcagacttccagcttaacaagttgcagcatcag 870 || | || ||||| ||| ||| | || || |||||||| ||||||| || ||||||| Sbjct: 769 gacgccgccgtggagagactcgcagttgccgagttccagctcaacaagtcgctgcatcag 828 Query: 871 atggaaatgcaagaggttaagagatggtggatgggcctgggattggctcaagaaatacc 929 || |||| |||| |||| || |||||||||| ||| || |||||| |||||||||| Sbjct: 829 ggagagatgcgagagattaaaaggtggtggatggacctagggttggctgaagaaatacc 887
>gb|AY505380.1| Hordeum vulgare subsp. vulgare cultivar Golden Promise genomic sequence corresponding to Ds insertion site in TNP-22 Length = 381 Score = 61.9 bits (31), Expect = 8e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 1006 cggattgagatcaccaaaatcatcgcaattgtcagtattgtggatgacatctttgatgtt 1065 |||||||||||||| || |||||| | ||||| |||||||||||||||||||||| || Sbjct: 88 cggattgagatcacaaagatcatctcgtttgtctatattgtggatgacatctttgatctt 29 Query: 1066 attgcaacacaagaggaactttc 1088 ||| || |||||||| ||||| Sbjct: 28 gttggcacccaagaggagctttc 6
>gb|AY505379.1| Hordeum vulgare subsp. vulgare cultivar Oregon Wolfe Barley Recessive genomic sequence corresponding to Ds insertion site in TNP-22 Length = 381 Score = 61.9 bits (31), Expect = 8e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 1006 cggattgagatcaccaaaatcatcgcaattgtcagtattgtggatgacatctttgatgtt 1065 |||||||||||||| || |||||| | ||||| |||||||||||||||||||||| || Sbjct: 88 cggattgagatcacaaagatcatctcgtttgtctatattgtggatgacatctttgatctt 29 Query: 1066 attgcaacacaagaggaactttc 1088 ||| || |||||||| ||||| Sbjct: 28 gttggcacccaagaggagctttc 6
>gb|AY946216.1| Hordeum vulgare subsp. vulgare 3' flanking sequence from Ds insertion in TNP-22 Length = 662 Score = 61.9 bits (31), Expect = 8e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 1006 cggattgagatcaccaaaatcatcgcaattgtcagtattgtggatgacatctttgatgtt 1065 |||||||||||||| || |||||| | ||||| |||||||||||||||||||||| || Sbjct: 227 cggattgagatcacaaagatcatctcgtttgtctatattgtggatgacatctttgatctt 168 Query: 1066 attgcaacacaagaggaactttc 1088 ||| || |||||||| ||||| Sbjct: 167 gttggcacccaagaggagctttc 145
>gb|AC192393.1| Pan troglodytes BAC clone CH251-66L11 from chromosome x, complete sequence Length = 150989 Score = 46.1 bits (23), Expect = 0.50 Identities = 23/23 (100%) Strand = Plus / Minus Query: 919 caagaaataccagctacacgtga 941 ||||||||||||||||||||||| Sbjct: 80036 caagaaataccagctacacgtga 80014
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.50 Identities = 23/23 (100%) Strand = Plus / Plus Query: 355 atgaccgacatcgatcacctcaa 377 ||||||||||||||||||||||| Sbjct: 1767906 atgaccgacatcgatcacctcaa 1767928 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 gcggcggccggcgacgtcgat 223 ||||||||||||||||||||| Sbjct: 2542921 gcggcggccggcgacgtcgat 2542901
>gb|AC002377.1|AC002377 Human PAC clone RP1-222H5 from Xq25-q26, complete sequence Length = 141779 Score = 46.1 bits (23), Expect = 0.50 Identities = 23/23 (100%) Strand = Plus / Minus Query: 919 caagaaataccagctacacgtga 941 ||||||||||||||||||||||| Sbjct: 139858 caagaaataccagctacacgtga 139836
>emb|CT009587.1| Triticum turgidum Length = 229209 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 188 gggtggccggggatggcggcggccgg 213 ||||||||||| |||||||||||||| Sbjct: 98289 gggtggccgggaatggcggcggccgg 98264
>emb|CT009586.1| Triticum aestivum Length = 107638 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 188 gggtggccggggatggcggcggccgg 213 ||||||||||| |||||||||||||| Sbjct: 3063 gggtggccgggaatggcggcggccgg 3038
>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence Length = 152510 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1794 ctagaggatgacagaaccagagcaaa 1819 ||||||||||||||||| |||||||| Sbjct: 45550 ctagaggatgacagaactagagcaaa 45525
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 674 tcacttctgcaattaaacactt 695 |||||||||||||||||||||| Sbjct: 375564 tcacttctgcaattaaacactt 375543
>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence Length = 158340 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1794 ctagaggatgacagaaccagagcaaa 1819 ||||||||||||||||| |||||||| Sbjct: 132555 ctagaggatgacagaactagagcaaa 132530
>gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome 14, complete sequence Length = 209218 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 674 tcacttctgcaattaaacactt 695 |||||||||||||||||||||| Sbjct: 134087 tcacttctgcaattaaacactt 134108
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 406 gatgagatcgacgatggcatgg 427 |||||||||||||||||||||| Sbjct: 1807063 gatgagatcgacgatggcatgg 1807084 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 406 gatgagatcgacgatggcatgg 427 |||||||||||||||||||||| Sbjct: 9007343 gatgagatcgacgatggcatgg 9007322
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1735 gtccttgaggagtacataagga 1756 |||||||||||||||||||||| Sbjct: 1106479 gtccttgaggagtacataagga 1106500
>ref|XM_001077115.1| PREDICTED: Rattus norvegicus hypothetical protein LOC687103 (LOC687103), mRNA Length = 309 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 66 ggccggggatggcggcggccg 86
>ref|XM_978639.1| PREDICTED: Mus musculus hypothetical protein LOC670034 (LOC670034), mRNA Length = 739 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 249 ggccggggatggcggcggccg 269
>gb|AC132832.13| Mus musculus chromosome 9, clone RP23-48D19, complete sequence Length = 230772 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 654 tgacttctcaagaaaacacct 674 ||||||||||||||||||||| Sbjct: 66036 tgacttctcaagaaaacacct 66056
>ref|NM_001033027.1| Macaca mulatta UDP Glucuronosyltransferase 2 family, polypeptide B9*2 (UGT2B9*2), mRNA gb|AF294901.1| Macaca mulatta UDP-Glucuronosyltransferase UGT2B9*2 mRNA, complete cds Length = 1662 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 877 atgcaagaggttaagagatgg 897 ||||||||||||||||||||| Sbjct: 313 atgcaagaggttaagagatgg 333
>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026D16, complete sequence Length = 129166 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cggggatggcggcggccggcg 215 ||||||||||||||||||||| Sbjct: 21206 cggggatggcggcggccggcg 21226
>gb|AC009127.10| Homo sapiens chromosome 16 clone RP11-498D10, complete sequence Length = 173128 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 166359 ggccggggatggcggcggccg 166339
>gb|AC117599.14| Mus musculus chromosome 1, clone RP23-426D21, complete sequence Length = 195683 Score = 42.1 bits (21), Expect = 7.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 atggcatggatgcatgcttgaatct 443 ||||||| ||||||||||||||||| Sbjct: 139294 atggcattgatgcatgcttgaatct 139318
>dbj|AK154744.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630105G01 product:aspartyl aminopeptidase, full insert sequence Length = 3306 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 15 ggccggggatggcggcggccg 35
>gb|AC010653.10| Homo sapiens chromosome 16 clone RP11-417N10, complete sequence Length = 184515 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 16521 ggccggggatggcggcggccg 16501
>dbj|AK172521.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830212F05 product:unclassifiable, full insert sequence Length = 2628 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 43 ggccggggatggcggcggccg 63
>dbj|AK089170.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630003G03 product:unclassifiable, full insert sequence Length = 2310 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 12 ggccggggatggcggcggccg 32
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cggggatggcggcggccggcg 215 ||||||||||||||||||||| Sbjct: 25793373 cggggatggcggcggccggcg 25793393
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 cggggatggcggcggccggcg 215 ||||||||||||||||||||| Sbjct: 19522919 cggggatggcggcggccggcg 19522899
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cggggatggcggcggccggcg 215 ||||||||||||||||||||| Sbjct: 105716 cggggatggcggcggccggcg 105736
>gb|AC080033.10| Homo sapiens chromosome 8, clone RP11-885J16, complete sequence Length = 141262 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 938 gtgaccaaattcttaaatggt 958 ||||||||||||||||||||| Sbjct: 82492 gtgaccaaattcttaaatggt 82512
>emb|AL049636.22|HSDJ792G4 Human DNA sequence from clone RP4-792G4 on chromosome 1p31.2-32.2 Contains the 5' end of the ALG6 gene for asparagine-linked glycosylation 6 homolog (yeast alpha-1 3-glucosyltransferase), a DnaJ (Hsp40) homolog subfamily C member 7 (DNAJC7) pseudogene, the FOXD3 gene for forkhead box D3, a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 142728 Score = 42.1 bits (21), Expect = 7.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 601 ttgcaggacatatcacacttgaaca 625 ||||| ||||||||||||||||||| Sbjct: 40641 ttgcaagacatatcacacttgaaca 40665
>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a novel gene and the 3' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9), complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1810 ccagagcaaagctggggtttt 1830 ||||||||||||||||||||| Sbjct: 113536 ccagagcaaagctggggtttt 113516
>gb|AC151914.19| Medicago truncatula clone mth2-29f16, complete sequence Length = 111276 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1260 gctttttgatgcatttttgct 1280 ||||||||||||||||||||| Sbjct: 107821 gctttttgatgcatttttgct 107801
>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence Length = 152468 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 654 tgacttctcaagaaaacacct 674 ||||||||||||||||||||| Sbjct: 148782 tgacttctcaagaaaacacct 148802
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0580A11 Length = 174673 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 cggggatggcggcggccggcg 215 ||||||||||||||||||||| Sbjct: 66263 cggggatggcggcggccggcg 66243
>gb|AC132138.2| Mus musculus BAC clone RP23-178E7 from 8, complete sequence Length = 204856 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 112334 ggccggggatggcggcggccg 112314
>gb|U91582.1|MFU91582 Macaca fascicularis UDP-glucuronosyltransferase mRNA, complete cds Length = 2648 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 877 atgcaagaggttaagagatgg 897 ||||||||||||||||||||| Sbjct: 298 atgcaagaggttaagagatgg 318
>emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on chromosome 4, complete sequence Length = 209764 Score = 42.1 bits (21), Expect = 7.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ggccggggatggcggcggccg 212 ||||||||||||||||||||| Sbjct: 103906 ggccggggatggcggcggccg 103886 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 348,697,368 Number of extensions: 17828473 Number of successful extensions: 93696 Number of sequences better than 10.0: 50 Number of HSP's gapped: 93689 Number of HSP's successfully gapped: 115 Length of query: 2032 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2009 Effective length of database: 18,503,978,556 Effective search space: 37174492919004 Effective search space used: 37174492919004 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
