| Clone Name | FLbaf147m04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT830451.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014L18, full insert sequence Length = 482 Score = 381 bits (192), Expect = e-102 Identities = 264/288 (91%) Strand = Plus / Plus Query: 83 aatgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaa 142 ||||||| | |||||||| || |||||| |||| ||| |||||||||||||||||||||| Sbjct: 95 aatgatgagctcacgaggcactagtgctatgctttcaagagctgctcggatgaggcaaaa 154 Query: 143 gctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgc 202 ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 155 gctacagtctgctttggaggccagtgcgctagatattgaagatgtttcttaccaacatgc 214 Query: 203 tgggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttc 262 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 215 tgggcatgcagctgtcaaggacaatgcaaatgagacacattttaacatcagggtaatttc 274 Query: 263 gccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgac 322 ||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 275 gcctaagtttgagggccagagccttgtgaagcgtcacaggatggtgtatgacctcttgac 334 Query: 323 cgatgagttgaactcgggtcttcatgctatctccattgttgcgaaaac 370 |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 335 tgatgagttgaactcaggacttcatgctatctcaattgttgcaaaaac 382 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaata 449 |||||||||||||||||||||| Sbjct: 448 aaataagttgattgcagcaata 469
>ref|NM_001055937.1| Oryza sativa (japonica cultivar-group) Os03g0219500 (Os03g0219500) mRNA, complete cds Length = 700 Score = 381 bits (192), Expect = e-102 Identities = 264/288 (91%) Strand = Plus / Plus Query: 83 aatgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaa 142 ||||||| | |||||||| || |||||| |||| ||| |||||||||||||||||||||| Sbjct: 110 aatgatgagctcacgaggcactagtgctatgctttcaagagctgctcggatgaggcaaaa 169 Query: 143 gctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgc 202 ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 170 gctacagtctgctttggaggccagtgcgctagatattgaagatgtttcttaccaacatgc 229 Query: 203 tgggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttc 262 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 230 tgggcatgcagctgtcaaggacaatgcaaatgagacacattttaacatcagggtaatttc 289 Query: 263 gccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgac 322 ||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 290 gcctaagtttgagggccagagccttgtgaagcgtcacaggatggtgtatgacctcttgac 349 Query: 323 cgatgagttgaactcgggtcttcatgctatctccattgttgcgaaaac 370 |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 350 tgatgagttgaactcaggacttcatgctatctcaattgttgcaaaaac 397 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaata 449 |||||||||||||||||||||| Sbjct: 463 aaataagttgattgcagcaata 484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 381 bits (192), Expect = e-102 Identities = 264/288 (91%) Strand = Plus / Plus Query: 83 aatgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaa 142 ||||||| | |||||||| || |||||| |||| ||| |||||||||||||||||||||| Sbjct: 6251252 aatgatgagctcacgaggcactagtgctatgctttcaagagctgctcggatgaggcaaaa 6251311 Query: 143 gctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgc 202 ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 6251312 gctacagtctgctttggaggccagtgcgctagatattgaagatgtttcttaccaacatgc 6251371 Query: 203 tgggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttc 262 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 6251372 tgggcatgcagctgtcaaggacaatgcaaatgagacacattttaacatcagggtaatttc 6251431 Query: 263 gccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgac 322 ||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 6251432 gcctaagtttgagggccagagccttgtgaagcgtcacaggatggtgtatgacctcttgac 6251491 Query: 323 cgatgagttgaactcgggtcttcatgctatctccattgttgcgaaaac 370 |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 6251492 tgatgagttgaactcaggacttcatgctatctcaattgttgcaaaaac 6251539 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaata 449 |||||||||||||||||||||| Sbjct: 6251605 aaataagttgattgcagcaata 6251626
>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11, complete sequence Length = 115403 Score = 381 bits (192), Expect = e-102 Identities = 264/288 (91%) Strand = Plus / Plus Query: 83 aatgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaa 142 ||||||| | |||||||| || |||||| |||| ||| |||||||||||||||||||||| Sbjct: 90650 aatgatgagctcacgaggcactagtgctatgctttcaagagctgctcggatgaggcaaaa 90709 Query: 143 gctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgc 202 ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 90710 gctacagtctgctttggaggccagtgcgctagatattgaagatgtttcttaccaacatgc 90769 Query: 203 tgggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttc 262 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 90770 tgggcatgcagctgtcaaggacaatgcaaatgagacacattttaacatcagggtaatttc 90829 Query: 263 gccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgac 322 ||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 90830 gcctaagtttgagggccagagccttgtgaagcgtcacaggatggtgtatgacctcttgac 90889 Query: 323 cgatgagttgaactcgggtcttcatgctatctccattgttgcgaaaac 370 |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 90890 tgatgagttgaactcaggacttcatgctatctcaattgttgcaaaaac 90937 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaata 449 |||||||||||||||||||||| Sbjct: 91003 aaataagttgattgcagcaata 91024
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 381 bits (192), Expect = e-102 Identities = 264/288 (91%) Strand = Plus / Plus Query: 83 aatgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaa 142 ||||||| | |||||||| || |||||| |||| ||| |||||||||||||||||||||| Sbjct: 65247 aatgatgagctcacgaggcactagtgctatgctttcaagagctgctcggatgaggcaaaa 65306 Query: 143 gctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgc 202 ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 65307 gctacagtctgctttggaggccagtgcgctagatattgaagatgtttcttaccaacatgc 65366 Query: 203 tgggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttc 262 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 65367 tgggcatgcagctgtcaaggacaatgcaaatgagacacattttaacatcagggtaatttc 65426 Query: 263 gccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgac 322 ||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 65427 gcctaagtttgagggccagagccttgtgaagcgtcacaggatggtgtatgacctcttgac 65486 Query: 323 cgatgagttgaactcgggtcttcatgctatctccattgttgcgaaaac 370 |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 65487 tgatgagttgaactcaggacttcatgctatctcaattgttgcaaaaac 65534 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaata 449 |||||||||||||||||||||| Sbjct: 65600 aaataagttgattgcagcaata 65621
>dbj|AK059646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C02, full insert sequence Length = 700 Score = 381 bits (192), Expect = e-102 Identities = 264/288 (91%) Strand = Plus / Plus Query: 83 aatgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaa 142 ||||||| | |||||||| || |||||| |||| ||| |||||||||||||||||||||| Sbjct: 110 aatgatgagctcacgaggcactagtgctatgctttcaagagctgctcggatgaggcaaaa 169 Query: 143 gctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgc 202 ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 170 gctacagtctgctttggaggccagtgcgctagatattgaagatgtttcttaccaacatgc 229 Query: 203 tgggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttc 262 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 230 tgggcatgcagctgtcaaggacaatgcaaatgagacacattttaacatcagggtaatttc 289 Query: 263 gccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgac 322 ||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 290 gcctaagtttgagggccagagccttgtgaagcgtcacaggatggtgtatgacctcttgac 349 Query: 323 cgatgagttgaactcgggtcttcatgctatctccattgttgcgaaaac 370 |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 350 tgatgagttgaactcaggacttcatgctatctcaattgttgcaaaaac 397 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaata 449 |||||||||||||||||||||| Sbjct: 463 aaataagttgattgcagcaata 484
>gb|DQ244406.1| Zea mays clone 7173 mRNA sequence Length = 680 Score = 280 bits (141), Expect = 5e-72 Identities = 258/297 (86%) Strand = Plus / Plus Query: 84 atgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaag 143 ||||||| ||||||||| |||||||| ||||| ||| | |||||||||||||||||||| Sbjct: 219 atgatggcttcacgaggcaccagtgccgtgctttcaagggctgctcggatgaggcaaaaa 278 Query: 144 ctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgct 203 ||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||| Sbjct: 279 ctgcagtctgccttggaggccagtgccctagatattgaagacgtttcttaccaacatgcc 338 Query: 204 gggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttcg 263 |||||||| || |||||||||||||| || |||||||| || ||||||||||| |||| Sbjct: 339 gggcatgcagccgtcaaggacaatgcgaacgagacgcacttcaacatcaaggttgtttca 398 Query: 264 ccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgacc 323 || || ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct: 399 ccaaaatttgaggggcagaaccttgtgaagcgtcacaggatggtgtatgatcttctgagg 458 Query: 324 gatgagttgaactcgggtcttcatgctatctccattgttgcgaaaaccccaaaagag 380 |||||| | | ||| || || |||||| |||||||||||||||||||||| |||||| Sbjct: 459 gatgagcttagctcaggcctccatgctgtctccattgttgcgaaaaccccgaaagag 515
>gb|AY109285.1| Zea mays PCO142612 mRNA sequence Length = 588 Score = 264 bits (133), Expect = 3e-67 Identities = 247/285 (86%) Strand = Plus / Plus Query: 84 atgatgggttcacgaggtaccagtgctgtgctctcacgagctgctcggatgaggcaaaag 143 ||||||| ||||||||| |||||||| ||||| ||| | |||||||||||||||||||| Sbjct: 234 atgatggcttcacgaggcaccagtgccgtgctttcaagggctgctcggatgaggcaaaaa 293 Query: 144 ctgcagtctgctttggaggccagtgcactagacgttgaagatgtttcttaccaacatgct 203 ||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||| Sbjct: 294 ctgcagtctgccttggaggccagtgccctagatattgaagacgtttcttaccaacatgcc 353 Query: 204 gggcatgcggctgtcaaggacaatgcaaatgagacgcattttaacatcaaggtaatttcg 263 |||||||| || |||||||||||||| || |||||||| || ||||||||||| |||| Sbjct: 354 gggcatgcagccgtcaaggacaatgcgaacgagacgcacttcaacatcaaggttgtttca 413 Query: 264 ccgaagtttgaagggcagagccttgtgaagcgtcataggatggtgtatgatctcttgacc 323 || || ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct: 414 ccaaaatttgaggggcagaaccttgtgaagcgtcacaggatggtgtatgatcttctgagg 473 Query: 324 gatgagttgaactcgggtcttcatgctatctccattgttgcgaaa 368 |||||| | | ||| || || |||||| ||||||||||||||||| Sbjct: 474 gatgagcttagctcaggcctccatgctgtctccattgttgcgaaa 518
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Plus Query: 108 gctgtgctctcacgagctgctcggatgaggcaaaagctgcagtctgctttggaggccagt 167 |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 25527147 gctgtgctttcaagagctgctcggatgaggcaaaagctgcagtcttctttggaggccagt 25527206 Query: 168 gcactagacgttgaagatgtttcttaccaacatgctgggcatgcggctgtcaaggacaat 227 || | ||| ||||||||||| ||||| | |||||||||||| | ||||||||||||||| Sbjct: 25527207 gcgatcgacattgaagatgttccttacaagcatgctgggcatacagctgtcaaggacaat 25527266 Query: 228 gcaaatgagacgcattttaacatcaaggtaatttcgccgaagtttgaagggcagagcctt 287 || |||||||||||||||||||||| |||||||||||| |||||||| || ||||||||| Sbjct: 25527267 gcgaatgagacgcattttaacatcagggtaatttcgcccaagtttgagggccagagcctt 25527326 Query: 288 gtgaagcgtcataggatggt 307 ||||||||||| |||||||| Sbjct: 25527327 gtgaagcgtcacaggatggt 25527346 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 310 atgatctcttgaccgatgagttgaactcgggtcttcatgctatctccattgtt 362 |||| |||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 25527363 atgacctcttgactgatgagttgaactcaggacttcatgctatctcaattgtt 25527415 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaatagcatgt 455 |||||||||||||||||||||| ||||| Sbjct: 25527612 aaataagttgattgcagcaatatcatgt 25527639
>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1581_H09 Length = 86699 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Plus Query: 108 gctgtgctctcacgagctgctcggatgaggcaaaagctgcagtctgctttggaggccagt 167 |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18546 gctgtgctttcaagagctgctcggatgaggcaaaagctgcagtcttctttggaggccagt 18605 Query: 168 gcactagacgttgaagatgtttcttaccaacatgctgggcatgcggctgtcaaggacaat 227 || | ||| ||||||||||| ||||| | |||||||||||| | ||||||||||||||| Sbjct: 18606 gcgatcgacattgaagatgttccttacaagcatgctgggcatacagctgtcaaggacaat 18665 Query: 228 gcaaatgagacgcattttaacatcaaggtaatttcgccgaagtttgaagggcagagcctt 287 || |||||||||||||||||||||| |||||||||||| |||||||| || ||||||||| Sbjct: 18666 gcgaatgagacgcattttaacatcagggtaatttcgcccaagtttgagggccagagcctt 18725 Query: 288 gtgaagcgtcataggatggt 307 ||||||||||| |||||||| Sbjct: 18726 gtgaagcgtcacaggatggt 18745 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 310 atgatctcttgaccgatgagttgaactcgggtcttcatgctatctccattgtt 362 |||| |||||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 18762 atgacctcttgactgatgagttgaactcaggacttcatgctatctcaattgtt 18814 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 428 aaataagttgattgcagcaatagcatgt 455 |||||||||||||||||||||| ||||| Sbjct: 19011 aaataagttgattgcagcaatatcatgt 19038
>gb|AC113464.17| Mus musculus chromosome 8, clone RP23-183P1, complete sequence Length = 191444 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 328 agttgaactcgggtcttcatgct 350 ||||||||||||||||||||||| Sbjct: 31743 agttgaactcgggtcttcatgct 31765
>ref|NM_118783.3| Arabidopsis thaliana EMB1374; transcription regulator (EMB1374) mRNA, complete cds Length = 1444 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 963 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 1008
>gb|AY084591.1| Arabidopsis thaliana clone 112720 mRNA, complete sequence Length = 1321 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 939 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 984
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65 Length = 198320 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Minus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 79856 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 79811
>emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA project) Length = 92657 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Minus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 11721 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 11676
>emb|AL022223.3|ATM3E9 Arabidopsis thaliana DNA chromosome 4, P1 clone M3E9 (ESSA project) Length = 80677 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 26552 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 26597
>gb|BT004190.1| Arabidopsis thaliana clone RAFL15-36-F11 (R50132) unknown protein (At4g26500) mRNA, complete cds Length = 1366 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 923 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 968
>emb|BX826682.1|CNS0A429 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB54ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1260 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 963 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 1008
>emb|BX826569.1|CNS0A46U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB41ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1291 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 926 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 971
>emb|BX826405.1|CNS0A3ZD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1441 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 959 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 1004
>gb|BT021125.1| Arabidopsis thaliana At4g26500 gene, complete cds Length = 1194 Score = 44.1 bits (22), Expect = 0.53 Identities = 40/46 (86%) Strand = Plus / Plus Query: 172 tagacgttgaagatgtttcttaccaacatgctgggcatgcggctgt 217 |||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 909 tagaagttgaagatgtttcttaccagcacgcaggacatgccgctgt 954
>gb|AC005915.1|AC005915 Homo sapiens chromosome 5, Bac clone 58g14 (LBNL H76), complete sequence Length = 151026 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 ctttccccttctccaccctaat 24 |||||||||||||||||||||| Sbjct: 39673 ctttccccttctccaccctaat 39694
>gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, complete sequence Length = 232085 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 ttgaactcgggtcttcatgct 350 ||||||||||||||||||||| Sbjct: 56353 ttgaactcgggtcttcatgct 56333
>gb|AC117748.13| Mus musculus chromosome 5, clone RP24-317A24, complete sequence Length = 180438 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 gccttaattgaagtgtgaatttctg 547 |||||||||||| |||||||||||| Sbjct: 158720 gccttaattgaaatgtgaatttctg 158744
>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence Length = 175945 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 326 tgagttgaactcgggtcttcatgct 350 |||||||||||| |||||||||||| Sbjct: 171407 tgagttgaactcaggtcttcatgct 171383
>gb|AC122231.2| Mus musculus BAC clone RP23-135M3 from 5, complete sequence Length = 172949 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 gccttaattgaagtgtgaatttctg 547 |||||||||||| |||||||||||| Sbjct: 158947 gccttaattgaaatgtgaatttctg 158923
>gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, complete sequence Length = 159548 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 ttgaactcgggtcttcatgct 350 ||||||||||||||||||||| Sbjct: 94173 ttgaactcgggtcttcatgct 94153
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 ttgaactcgggtcttcatgct 350 ||||||||||||||||||||| Sbjct: 136636 ttgaactcgggtcttcatgct 136656
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgacctccg 49 ||||| ||||||||||||||||||| Sbjct: 11900755 ccgccctcttcctcctcgacctccg 11900779
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 ttgttccaaaataagttgatt 440 ||||||||||||||||||||| Sbjct: 15038900 ttgttccaaaataagttgatt 15038920
>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence Length = 210913 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 326 tgagttgaactcgggtcttcatgct 350 |||||||||||| |||||||||||| Sbjct: 62110 tgagttgaactcaggtcttcatgct 62086
>emb|AL109826.25|HSJ272H18 Human DNA sequence from clone RP1-272H18 on chromosome 20q12-13.12 Contains an STS and GSSs, complete sequence Length = 50954 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 499 tctccatgataaagacatatt 519 ||||||||||||||||||||| Sbjct: 43076 tctccatgataaagacatatt 43056
>emb|BX323026.5| Mouse DNA sequence from clone RP24-95F14 on chromosome 11 Contains the Ppm1d gene for magnesium-dependent protein phosphatase 1D delta isoform, the 5' end of the Bcas3 gene for breast carcinoma amplified sequence 3 and a CpG island, complete sequence Length = 130030 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 ttgaactcgggtcttcatgct 350 ||||||||||||||||||||| Sbjct: 118256 ttgaactcgggtcttcatgct 118276
>dbj|AP004755.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0543C04 Length = 147889 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 ttgttccaaaataagttgatt 440 ||||||||||||||||||||| Sbjct: 136961 ttgttccaaaataagttgatt 136981
>dbj|AP005910.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0034G14 Length = 154120 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 ttgttccaaaataagttgatt 440 ||||||||||||||||||||| Sbjct: 18220 ttgttccaaaataagttgatt 18240
>dbj|AP006343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1032F05 Length = 151412 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgacctccg 49 ||||| ||||||||||||||||||| Sbjct: 133055 ccgccctcttcctcctcgacctccg 133079
>dbj|AP006529.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1114D08 Length = 148354 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgacctccg 49 ||||| ||||||||||||||||||| Sbjct: 31796 ccgccctcttcctcctcgacctccg 31820
>emb|AL606969.26| Mouse DNA sequence from clone RP23-331P21 on chromosome 4, complete sequence Length = 224344 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 ttgaactcgggtcttcatgct 350 ||||||||||||||||||||| Sbjct: 183663 ttgaactcgggtcttcatgct 183643
>emb|AL671878.8| Mouse DNA sequence from clone RP23-184D5 on chromosome 4, complete sequence Length = 230395 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 ttgaactcgggtcttcatgct 350 ||||||||||||||||||||| Sbjct: 169392 ttgaactcgggtcttcatgct 169372
>gb|DQ453965.1| Oryza sativa (indica cultivar-group) clone BAC 118K20 chromosome 9 map Sub1 locus, complete sequence Length = 31999 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgac 44 |||||||||||||||||||| Sbjct: 22217 ccgccgtcttcctcctcgac 22236
>gb|AC144822.2| Danio rerio clone CH211-13O4, complete sequence Length = 164460 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cattttaacatcaaggtaat 259 |||||||||||||||||||| Sbjct: 151455 cattttaacatcaaggtaat 151436
>gb|AC125126.4| Mus musculus BAC clone RP24-282D2 from chromosome 7, complete sequence Length = 175906 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tgaactcgggtcttcatgct 350 |||||||||||||||||||| Sbjct: 104044 tgaactcgggtcttcatgct 104063
>gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome 6, complete sequence Length = 200673 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tgaactcgggtcttcatgct 350 |||||||||||||||||||| Sbjct: 110576 tgaactcgggtcttcatgct 110595
>gb|AC126548.4| Mus musculus BAC clone RP24-199M7 from chromosome 13, complete sequence Length = 145578 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tgaactcgggtcttcatgct 350 |||||||||||||||||||| Sbjct: 117892 tgaactcgggtcttcatgct 117873
>gb|AC121922.3| Mus musculus BAC clone RP24-198H19 from chromosome 9, complete sequence Length = 180690 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gagttgaactcgggtcttcatgct 350 ||||||||||| |||||||||||| Sbjct: 34215 gagttgaactcaggtcttcatgct 34192
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tgaactcgggtcttcatgct 350 |||||||||||||||||||| Sbjct: 36872 tgaactcgggtcttcatgct 36891
>gb|AC121921.2| Mus musculus BAC clone RP24-198H8 from 9, complete sequence Length = 175965 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gagttgaactcgggtcttcatgct 350 |||||||||||||||| ||||||| Sbjct: 138989 gagttgaactcgggtcctcatgct 138966
>gb|AC093304.4| Homo sapiens chromosome 5 clone RP11-69K7, complete sequence Length = 161421 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 atgataaagacatattgctgcctt 527 |||| ||||||||||||||||||| Sbjct: 27500 atgaaaaagacatattgctgcctt 27477
>gb|AC162917.3| Mus musculus BAC clone RP23-379N7 from chromosome 9, complete sequence Length = 189606 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gagttgaactcgggtcttcatgct 350 |||||||||||||||| ||||||| Sbjct: 62154 gagttgaactcgggtcctcatgct 62131
>gb|AC123022.4| Homo sapiens 3 BAC RP11-36C14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152395 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 tttatggcatgcatatttct 501 |||||||||||||||||||| Sbjct: 77889 tttatggcatgcatatttct 77908
>gb|AC108740.6| Homo sapiens 3 BAC RP11-481N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133915 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 tttatggcatgcatatttct 501 |||||||||||||||||||| Sbjct: 107519 tttatggcatgcatatttct 107500
>gb|AC110775.3| Homo sapiens BAC clone RP11-290O12 from 4, complete sequence Length = 210300 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 aggatggtgtatgatctcttgacc 323 |||||||| ||||||||||||||| Sbjct: 148858 aggatggtctatgatctcttgacc 148881
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgac 44 |||||||||||||||||||| Sbjct: 6342985 ccgccgtcttcctcctcgac 6343004
>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence Length = 161873 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccgccgtcttcctcctcgac 44 |||||||||||||||||||| Sbjct: 86672 ccgccgtcttcctcctcgac 86653
>gb|AC066692.3| Homo sapiens BAC clone RP11-424C23 from 2, complete sequence Length = 175028 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ttgaagatgtttcttaccaa 197 |||||||||||||||||||| Sbjct: 114597 ttgaagatgtttcttaccaa 114616
>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0663H05 Length = 161938 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgac 44 |||||||||||||||||||| Sbjct: 75264 ccgccgtcttcctcctcgac 75283
>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0453B09 Length = 173688 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgtcttcctcctcgac 44 |||||||||||||||||||| Sbjct: 9062 ccgccgtcttcctcctcgac 9081
>emb|AL929157.21| Mouse DNA sequence from clone RP23-94K14 on chromosome 2, complete sequence Length = 127383 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tgaactcgggtcttcatgct 350 |||||||||||||||||||| Sbjct: 106336 tgaactcgggtcttcatgct 106355
>gb|AC005052.2|AC005052 Homo sapiens BAC clone CTB-38K21 from Xq23, complete sequence Length = 134210 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 aggatggtgtatgatctcttgacc 323 |||||||| ||||||||||||||| Sbjct: 121989 aggatggtctatgatctcttgacc 121966
>emb|BX820574.1|CNS0A8QQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH49ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1922 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 taccagtgctgtgctctcac 120 |||||||||||||||||||| Sbjct: 1592 taccagtgctgtgctctcac 1611
>emb|AL807785.7| Mouse DNA sequence from clone RP23-460B18 on chromosome X, complete sequence Length = 69447 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gagttgaactcgggtcttca 346 |||||||||||||||||||| Sbjct: 28646 gagttgaactcgggtcttca 28627
>emb|AL772277.13| Mouse DNA sequence from clone RP23-416H4 on chromosome 4, complete sequence Length = 167123 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gagttgaactcgggtcttcatgct 350 ||||||||||||||||| |||||| Sbjct: 123051 gagttgaactcgggtctccatgct 123028
>emb|AL732539.6| Mouse DNA sequence from clone RP23-255E6 on chromosome 11 Contains the 3' end of the Msi2h gene for Musashi homolog 2 (Drosophila), an eukaryotic translation elongation factor 2 (Eef2) pseudogene and a ribosomal protein L35a (Rpl35a) pseudogene, complete sequence Length = 216688 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gagttgaactcgggtcttcatgct 350 ||||||||||| |||||||||||| Sbjct: 68735 gagttgaactcaggtcttcatgct 68712
>gb|AC132433.3| Mus musculus BAC clone RP23-214L14 from 13, complete sequence Length = 229555 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tgaactcgggtcttcatgct 350 |||||||||||||||||||| Sbjct: 43052 tgaactcgggtcttcatgct 43033
>emb|AL845513.9| Zebrafish DNA sequence from clone CH211-13O4 in linkage group 16, complete sequence Length = 164117 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cattttaacatcaaggtaat 259 |||||||||||||||||||| Sbjct: 12994 cattttaacatcaaggtaat 13013
>gb|AC008464.7| Homo sapiens chromosome 5 clone CTC-353G13, complete sequence Length = 92694 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 atgataaagacatattgctgcctt 527 |||| ||||||||||||||||||| Sbjct: 81374 atgaaaaagacatattgctgcctt 81351 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 102,151,653 Number of extensions: 5563858 Number of successful extensions: 110467 Number of sequences better than 10.0: 66 Number of HSP's gapped: 110465 Number of HSP's successfully gapped: 76 Length of query: 566 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 544 Effective length of database: 18,508,616,841 Effective search space: 10068687561504 Effective search space used: 10068687561504 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)