>LOC_Os12g19394:12012.t004152:unspliced-genomic ribulose bisphosphate carboxylase small chain C, chloroplast|
precursor, putative, expressed
Length = 1344
Score = 278 bits (601), Expect(3) = e-100
Identities = 105/125 (84%), Positives = 118/125 (94%)
Frame = +1 / +3
Query: 208 QVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYY 387
QVWPIEGIKKFETLSYLPPL+ E LLKQ++YL+RSKWVPCLEFSKVGFV+RE++ SPGYY
Sbjct: 468 QVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYY 647
Query: 388 DGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRPPG 567
DGRYWTMWKLPMFGCTDATQVL E+EE KK YPDA+VRIIGFDN+RQVQ +SFIA++PPG
Sbjct: 648 DGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 827
Query: 568 CEESG 582
CEESG
Sbjct: 828 CEESG 842
Score = 103 bits (219), Expect(3) = e-100
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = +1 / +3
Query: 64 MAPAVMASSATTVAPFQGLKSTAGLPVSRRSGSAGLSSVSNGGRIRCMQV 213
MAP VMASSAT+VAPFQGLKSTAGLPVSRRS SAGL SVSNGGRI CMQV
Sbjct: 207 MAPTVMASSATSVAPFQGLKSTAGLPVSRRSNSAGLGSVSNGGRISCMQV 356
Score = 28.1 bits (55), Expect(3) = e-100
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3 / +2
Query: 705 MYLSTYQRRPRRMHMRIIAP 764
MY+ YQ R + MHM ++AP
Sbjct: 1034 MYICMYQHRLKSMHM*MLAP 1093
Score = 204 bits (440), Expect(2) = 7e-62
Identities = 90/125 (72%), Positives = 97/125 (77%)
Frame = -3 / -3
Query: 581 PDSSQPGGLKAMKLTHCTCRRLSKPMMRT*ASGYXXXXXXXXXXTCVASVHPNIGSFHIV 402
PDSSQPGGL AMKL +CTC LSKPMMRT ASGY T VASVHPNIGSFH+V
Sbjct: 841 PDSSQPGGL*AMKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNIGSFHMV 662
Query: 401 QYRPS*YPGELLCSRKTKPTLLNSRQGTHLERIR*STCFRRASVERGGK*DRVSNFLMPS 222
QY PS*YPG+L SR T PTLLNSRQGTHL+R R S CF+R+S GG+ DRVSNFLMPS
Sbjct: 661 QYLPS*YPGDLWFSR*TNPTLLNSRQGTHLDRSRYSICFKRSSTVSGGRYDRVSNFLMPS 482
Query: 221 IGHTC 207
IGHTC
Sbjct: 481 IGHTC 467
Score = 57.0 bits (118), Expect(2) = 7e-62
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3 / -3
Query: 143 TGRPAVDLSPWKGATVVADEAITAGAM 63
TG PAVDLSPWKGAT VADEAIT GA+
Sbjct: 286 TGSPAVDLSPWKGATEVADEAITVGAI 206
Score = 144 bits (310), Expect(2) = 4e-38
Identities = 75/126 (59%), Positives = 87/126 (69%)
Frame = +3 / +2
Query: 207 AGVAD*GHQEVRDPVLLATPLHGGPPEAGRLPDPLQVGALPRVQQGWLRLP*AQQLPRVL 386
AGVAD* HQEV DPV+ AT GP EA R+P P+Q+GALPRV G +RLP* Q+ VL
Sbjct: 467 AGVAD*RHQEV*DPVVPATAHGRGPLEADRVPAPVQMGALPRV**GRVRLP*EPQVSWVL 646
Query: 387 RRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP*RLRPHHRL*QPAAGAVRQLHRLQATG 566
+LD+VEAAYV +H H GAQ GQEG+ + HHRL Q AGAV LHRLQA G
Sbjct: 647 *WQVLDHVEAAYVRMH*CHPGAQGARGGQEGISRCICSHHRLRQRQAGAVD*LHRLQAPG 826
Query: 567 LRGVRQ 584
LRGVR+
Sbjct: 827 LRGVRR 844
Score = 36.8 bits (74), Expect(2) = 4e-38
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3 / +2
Query: 63 HGPSRDGFVSHHRRPLPGAQVHR 131
+G RDG V H R LPGAQ+HR
Sbjct: 206 NGAHRDGLVGHLRCSLPGAQIHR 274
Score = 84.9 bits (179), Expect(3) = 1e-23
Identities = 36/52 (69%), Positives = 41/52 (78%)
Frame = -2 / -2
Query: 363 LTEDEANLAELEAGHPLGADQVVDLLQEGLRGEGWQVRQGLELLDALNRPHL 208
LT DE +L +LEA HP G +QV+DLLQE L E WQVRQGL+LLDA NRPHL
Sbjct: 623 LTVDEPDLTKLEARHPFGPEQVLDLLQEVLDRERWQVRQGLKLLDAFNRPHL 468
Score = 36.8 bits (74), Expect(3) = 1e-23
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2 / -2
Query: 552 GDEADALHLPQVVKADDAD 496
GDEA+ LHLP VV+ADDA+
Sbjct: 812 GDEANQLHLPDVVEADDAN 756
Score = 25.8 bits (50), Expect(3) = 1e-23
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 441 GVGAPKHRQLPH 406
G+ A +HRQLPH
Sbjct: 701 GISASEHRQLPH 666
Score = 59.3 bits (123), Expect(3) = 1e-17
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = -1 / -1
Query: 442 WRRCTQT*AASTLSSIGRRSTRGSCCAHGRRSQPC*TRGRAP 317
W +C +T*AAST SS ST+ +C +HGRR++P *TRG+AP
Sbjct: 702 WHQCIRT*AASTWSSTCHHSTQETCGSHGRRTRPY*TRGKAP 577
Score = 34.1 bits (68), Expect(3) = 1e-17
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -1 / -1
Query: 262 VASKTGSRTS*CPQSATPA 206
VA TGS+TS*C QSATPA
Sbjct: 522 VAGTTGSQTS*CLQSATPA 466
Score = 33.6 bits (67), Expect(3) = 1e-17
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -1 / -1
Query: 580 RTPRNPVA*RR*S*RTAPA 524
RTPRNP A RR*S* TAPA
Sbjct: 840 RTPRNPGACRR*S*STAPA 784
Score = 42.8 bits (87), Expect(3) = 3e-11
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / +1
Query: 209 RCGRLRASRSSRPCLTCH 262
RCGRL+ASRS RPC TCH
Sbjct: 469 RCGRLKASRSLRPCRTCH 522
Score = 36.3 bits (73), Expect(3) = 3e-11
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2 / +1
Query: 524 GRCSASASSPSGHRVARSPARHKV 595
GRCS ASSP+ RVARSPA K+
Sbjct: 784 GRCS*LASSPTSPRVARSPAETKL 855
Score = 30.9 bits (61), Expect(3) = 3e-11
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 407 CGSCLCLGAPTPHRCS 454
CGSCLC A P RCS
Sbjct: 667 CGSCLCSDALMPPRCS 714
>LOC_Os12g19381:12012.t01783:unspliced-genomic ribulose bisphosphate carboxylase small chain C, chloroplast|
precursor, putative, expressed
Length = 1193
Score = 278 bits (602), Expect(3) = 2e-98
Identities = 105/126 (83%), Positives = 119/126 (94%)
Frame = +1 / +2
Query: 205 MQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGY 384
+QVWPIEGIKKFETLSYLPPL+ E LLKQ++YL+RSKWVPCLEFSKVGFV+RE++ SPGY
Sbjct: 344 IQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGY 523
Query: 385 YDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRPP 564
YDGRYWTMWKLPMFGCTDATQVL E+EE KK YPDA+VRIIGFDN+RQVQ +SFIA++PP
Sbjct: 524 YDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPP 703
Query: 565 GCEESG 582
GCEESG
Sbjct: 704 GCEESG 721
Score = 99.6 bits (211), Expect(3) = 2e-98
Identities = 42/53 (79%), Positives = 48/53 (90%)
Frame = +1 / +2
Query: 64 MAPAVMASSATTVAPFQGLKSTAGLPVSRRSGSAGLSSVSNGGRIRCMQVWPI 222
MAP VMASSAT+VAPFQGLKSTAGLPVSRRS ++G +VSNGGRI+CMQV+ I
Sbjct: 92 MAPTVMASSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVYMI 250
Score = 26.3 bits (51), Expect(3) = 2e-98
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 613 YTCYVSSHWLVGSSAFSILLLVPIICEYTSICI 711
+T YVS +L+ SS + + +C + SIC+
Sbjct: 990 HTRYVSRAYLINSSTIKKMDGIT*LCLFLSICL 1088
Score = 137 bits (293), Expect(3) = 5e-53
Identities = 58/78 (74%), Positives = 65/78 (83%)
Frame = -3 / -3
Query: 443 VASVHPNIGSFHIVQYRPS*YPGELLCSRKTKPTLLNSRQGTHLERIR*STCFRRASVER 264
VASV PN+GSFH+VQY PS*YPG+L SR T PTLLNSRQGTHL+R R S CF+R+S
Sbjct: 582 VASVQPNMGSFHMVQYLPS*YPGDLWFSR*TNPTLLNSRQGTHLDRSRYSICFKRSSTVS 403
Query: 263 GGK*DRVSNFLMPSIGHT 210
GG+ DRVSNFLMPSIGHT
Sbjct: 402 GGRYDRVSNFLMPSIGHT 349
Score = 62.0 bits (129), Expect(3) = 5e-53
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = -3 / -3
Query: 581 PDSSQPGGLKAMKLTHCTCRRLSKPMMRT*ASG 483
PDSSQPGGL AMKL +CTC LSKPM+RT ASG
Sbjct: 720 PDSSQPGGL*AMKLINCTCLTLSKPMIRTKASG 622
Score = 52.8 bits (109), Expect(3) = 5e-53
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / -3
Query: 143 TGRPAVDLSPWKGATVVADEAITAGAM 63
TG PAVDLSPW GAT VA+EAIT GA+
Sbjct: 171 TGSPAVDLSPWNGATEVAEEAITVGAI 91
Score = 171 bits (368), Expect(3) = 5e-50
Identities = 79/126 (62%), Positives = 95/126 (75%)
Frame = +3 / +1
Query: 201 MHAGVAD*GHQEVRDPVLLATPLHGGPPEAGRLPDPLQVGALPRVQQGWLRLP*AQQLPR 380
+++GVA+*GHQEVRDP++ AT GG EA R+P +QVGALPRVQQGW+RLP* Q+ R
Sbjct: 340 IYSGVAN*GHQEVRDPIVPATTHRGGSFEADRVPASIQVGALPRVQQGWIRLP*EPQVSR 519
Query: 381 VLRRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP*RLRPHHRL*QPAAGAVRQLHRLQA 560
VLR +LD+VEAA+V +HR H GAQ GQEG+P L P+HRL Q AGAV LHRLQA
Sbjct: 520 VLRWQVLDHVEAAHVRLHRCHPGAQGARGGQEGLPRCLCPYHRLRQRQAGAVD*LHRLQA 699
Query: 561 TGLRGV 578
LRGV
Sbjct: 700 PRLRGV 717
Score = 35.9 bits (72), Expect(3) = 5e-50
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3 / +1
Query: 63 HGPSRDGFVSHHRRPLPGAQVHR 131
+GP RDG + H R +P AQVHR
Sbjct: 91 YGPHRDGLLGHLRGSIPRAQVHR 159
Score = 29.5 bits (58), Expect(3) = 5e-50
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 186 WRKDQMHAGVAD 221
WRKDQ+HAG+ D
Sbjct: 214 WRKDQVHAGIYD 249
Score = 91.8 bits (194), Expect(3) = 1e-26
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = -2 / -2
Query: 363 LTEDEANLAELEAGHPLGADQVVDLLQEGLRGEGWQVRQGLELLDALNRPHLH 205
LT DE+NLAELEA HPLG+ QV+DLLQ+ L GE WQVR GLELLDALN PHL+
Sbjct: 502 LTVDESNLAELEARHPLGSKQVLDLLQKILHGEWWQVR*GLELLDALNWPHLN 344
Score = 40.5 bits (82), Expect(3) = 1e-26
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2 / -2
Query: 552 GDEADALHLPQVVKADDADVGV 487
GDEA+ LHLP VV+ADD D G+
Sbjct: 691 GDEANQLHLPDVVEADDTDKGI 626
Score = 25.4 bits (49), Expect(3) = 1e-26
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 441 GVGAPKHRQLPH 406
G+GA +H QLPH
Sbjct: 580 GIGAAEHGQLPH 545
Score = 70.3 bits (147), Expect(3) = 1e-18
Identities = 28/43 (65%), Positives = 34/43 (79%)
Frame = -1 / -1
Query: 442 WRRCTQT*AASTLSSIGRRSTRGSCCAHGRRSQPC*TRGRAPT 314
W RC++T AAST S+ RSTR +C +HGRR QPC*TRG+APT
Sbjct: 581 WHRCSRTWAASTWSNTCHRSTRETCGSHGRRIQPC*TRGKAPT 453
Score = 33.1 bits (66), Expect(3) = 1e-18
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -1
Query: 262 VASKTGSRTS*CPQSATP 209
VA GSRTS*CPQ ATP
Sbjct: 401 VAGTIGSRTS*CPQLATP 348
Score = 27.2 bits (53), Expect(3) = 1e-18
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1 / -1
Query: 580 RTPRNPVA*RR*S*RTAPA 524
+TPRN A RR*S* TAPA
Sbjct: 719 QTPRNLGACRR*S*STAPA 663
Score = 40.0 bits (81), Expect(4) = 3e-10
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / +3
Query: 209 RCGRLRASRSSRPCLTCH 262
RCG+LRASRSSRP TCH
Sbjct: 348 RCGQLRASRSSRPYRTCH 401
Score = 32.7 bits (65), Expect(4) = 3e-10
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 407 CGSCLCLGAPTPHRCS 454
CGSC C AP P RCS
Sbjct: 546 CGSCPCSAAPMPPRCS 593
Score = 29.0 bits (57), Expect(4) = 3e-10
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2 / +3
Query: 524 GRCSASASSPSGHRVARSPARHKVQVEVTDIHAML 628
GRCS ASSP+ +VARS K++ + + L
Sbjct: 663 GRCS*LASSPTSPQVARSLVATKLRSSIALVDCCL 767
Score = 22.1 bits (42), Expect(4) = 3e-10
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +3
Query: 185 MAEGSDACR 211
MAEGS ACR
Sbjct: 213 MAEGSSACR 239
>LOC_Os12g19470:12012.t01792:unspliced-genomic ribulose bisphosphate carboxylase small chain C, chloroplast|
precursor, putative, expressed
Length = 2281
Score = 278 bits (601), Expect(2) = 3e-97
Identities = 105/125 (84%), Positives = 118/125 (94%)
Frame = +1 / +3
Query: 208 QVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYY 387
QVWPIEGIKKFETLSYLPPL+ E LLKQ++YL+RSKWVPCLEFSKVGFV+RE++ SPGYY
Sbjct: 453 QVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYY 632
Query: 388 DGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRPPG 567
DGRYWTMWKLPMFGCTDATQVL E+EE KK YPDA+VRIIGFDN+RQVQ +SFIA++PPG
Sbjct: 633 DGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 812
Query: 568 CEESG 582
CEESG
Sbjct: 813 CEESG 827
Score = 98.2 bits (208), Expect(2) = 3e-97
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = +1 / +2
Query: 55 RTTMAPAVMASSATTVAPFQGLKSTAGLPVSRRSGSAGLSSVSNGGRIRCMQV 213
+ MAP+VMASSAT+VAPFQGLKSTAGLPV+RRS S+ +VSNGGRIRCMQV
Sbjct: 197 KLAMAPSVMASSATSVAPFQGLKSTAGLPVNRRSSSSSFGNVSNGGRIRCMQV 355
Score = 199 bits (429), Expect(2) = 8e-61
Identities = 88/124 (70%), Positives = 96/124 (77%)
Frame = -3 / -1
Query: 581 PDSSQPGGLKAMKLTHCTCRRLSKPMMRT*ASGYXXXXXXXXXXTCVASVHPNIGSFHIV 402
PDSSQPGGL AMKL +CTC LSKPMMRT ASGY T VASVHPN+GSFH+V
Sbjct: 826 PDSSQPGGLYAMKLINCTCLTLSKPMMRTKASGYAFFASSSSLSTWVASVHPNMGSFHMV 647
Query: 401 QYRPS*YPGELLCSRKTKPTLLNSRQGTHLERIR*STCFRRASVERGGK*DRVSNFLMPS 222
QY PS*YPG+L SR T PTLLNS+QGTHL+R R S CF+R+S GGK DRVSNFLMPS
Sbjct: 646 QYLPS*YPGDL*FSR*TNPTLLNSKQGTHLDRSRYSICFKRSSTVNGGKYDRVSNFLMPS 467
Query: 221 IGHT 210
IGHT
Sbjct: 466 IGHT 455
Score = 59.3 bits (123), Expect(2) = 8e-61
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / -2
Query: 143 TGRPAVDLSPWKGATVVADEAITAGAM 63
TGRPAVDLSPWKGAT VADEAIT GA+
Sbjct: 285 TGRPAVDLSPWKGATEVADEAITEGAI 205
Score = 168 bits (362), Expect(2) = 1e-44
Identities = 87/170 (51%), Positives = 111/170 (65%)
Frame = +3 / +2
Query: 201 MHAGVAD*GHQEVRDPVLLATPLHGGPPEAGRLPDPLQVGALPRVQQGWLRLP*AQQLPR 380
+ +GVAD*GH EVRD V+LA GGP EA R+P P+ VGAL VQQG +RLP* Q+ R
Sbjct: 446 IQSGVAD*GH*EVRDSVVLAAIDSGGPFEADRVPAPI*VGALLGVQQGRIRLP*ESQITR 625
Query: 381 VLRRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP*RLRPHHRL*QPAAGAVRQLHRLQA 560
+L R +LD+VE A+VW+HR H AQ G+EG+P* LR HH L*Q AGAV QLHR+ A
Sbjct: 626 IL*R*VLDHVETAHVWMHRCHPSAQGARGGKEGIP*CLRSHHWL*QR*AGAVNQLHRV*A 805
Query: 561 TGLRGVRQGIKCKLK*PIYMLC*FTLVGRQLCFLNFTSRSNHM*IYEHMY 710
TGLRGVR+ + + ++ L F L R + SRS+ + E+ Y
Sbjct: 806 TGLRGVRRQLSAFVPSCMFFLFLFFLCVRVKLHVIVLSRSDLPLLQEYYY 955
Score = 35.9 bits (72), Expect(2) = 1e-44
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3 / +1
Query: 63 HGPSRDGFVSHHRRPLPGAQVHRG 134
+G DGFV H R LPGAQVH G
Sbjct: 205 NGSLGDGFVGHLRGSLPGAQVHCG 276
Score = 76.7 bits (161), Expect(3) = 4e-23
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = -2 / -3
Query: 363 LTEDEANLAELEAGHPLGADQVVDLLQEGLRGEGWQVRQGLELLDALNRPHL 208
LT DE++LAEL+A HPL ++QV+DLLQ+ L + QVRQ LELL+ALNRPHL
Sbjct: 608 LTVDESDLAELQARHPLRSEQVLDLLQKVLHCQWRQVRQSLELLNALNRPHL 453
Score = 43.7 bits (89), Expect(3) = 4e-23
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = -2 / -3
Query: 564 RWPEGDEADALHLPQVVKADDADVGVR 484
RW DEAD LHLP VVKA+DA+ G+R
Sbjct: 809 RWLIRDEAD*LHLPNVVKANDANEGIR 729
Score = 25.4 bits (49), Expect(3) = 4e-23
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2 / -3
Query: 441 GVGAPKHRQLPH 406
G+GA KH Q PH
Sbjct: 686 GIGASKHGQFPH 651
Score = 58.3 bits (121), Expect(3) = 6e-17
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = -1 / -2
Query: 442 WRRCTQT*AASTLSSIGRRSTRGSCCAHGRRSQPC*TRGRAPT 314
W RC QT A ST SS R S R C +HGRR +PC*T +APT
Sbjct: 687 WHRCIQTWAVSTWSSTYRHSIRVICDSHGRRIRPC*TPSKAPT 559
Score = 35.0 bits (70), Expect(3) = 6e-17
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -2
Query: 259 ASKTGSRTS*CPQSATP 209
AS T SRTS*CPQSATP
Sbjct: 504 ASTTESRTS*CPQSATP 454
Score = 31.3 bits (62), Expect(3) = 6e-17
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / -2
Query: 577 TPRNPVA*RR*S*RTAPA 524
TPRNPVA R*S* TAPA
Sbjct: 822 TPRNPVAYTR*S*LTAPA 769
Score = 35.9 bits (72), Expect(3) = 2e-08
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2 / +1
Query: 209 RCGRLRASRSSRPCLTC 259
RCGRLRA RSSR C TC
Sbjct: 454 RCGRLRALRSSRLCRTC 504
Score = 33.6 bits (67), Expect(3) = 2e-08
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +2 / +1
Query: 524 GRCSASASSPSGHRVARSPARHK 592
GRCS SASS HRVARS A K
Sbjct: 769 GRCS*SASSRISHRVARSQAATK 837
Score = 32.2 bits (64), Expect(3) = 2e-08
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 407 CGSCLCLGAPTPHRCS 454
CG+C CL AP P +CS
Sbjct: 652 CGNCPCLDAPMPPKCS 699
>LOC_Os12g17600:12012.t01612:unspliced-genomic ribulose bisphosphate carboxylase small chain C, chloroplast|
precursor, putative, expressed
Length = 1248
Score = 275 bits (596), Expect(2) = 4e-97
Identities = 104/124 (83%), Positives = 117/124 (94%)
Frame = +1 / +2
Query: 211 VWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYD 390
VWPIEGIKKFETLSYLPPL+ E LLKQ++YL+RSKWVPCLEFSKVGFV+RE++ SPGYYD
Sbjct: 515 VWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYD 694
Query: 391 GRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRPPGC 570
GRYWTMWKLPMFGCTDATQVL E+EE KK YPDA+VRIIGFDN+RQVQ +SFIA++PPGC
Sbjct: 695 GRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 874
Query: 571 EESG 582
EESG
Sbjct: 875 EESG 886
Score = 100 bits (212), Expect(2) = 4e-97
Identities = 41/50 (82%), Positives = 47/50 (94%)
Frame = +1 / +1
Query: 64 MAPAVMASSATTVAPFQGLKSTAGLPVSRRSGSAGLSSVSNGGRIRCMQV 213
MAP+VMASSATTVAPFQGLKSTAG+PV+RRSG++ +VSNGGRIRCMQV
Sbjct: 265 MAPSVMASSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQV 414
Score = 199 bits (429), Expect(2) = 1e-60
Identities = 89/124 (71%), Positives = 96/124 (77%)
Frame = -3 / -1
Query: 581 PDSSQPGGLKAMKLTHCTCRRLSKPMMRT*ASGYXXXXXXXXXXTCVASVHPNIGSFHIV 402
PDSSQPGGL AMKL CTC LSKPM+RT ASGY T VASVHPN+GSFH+V
Sbjct: 885 PDSSQPGGL*AMKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMV 706
Query: 401 QYRPS*YPGELLCSRKTKPTLLNSRQGTHLERIR*STCFRRASVERGGK*DRVSNFLMPS 222
QY PS*YPG+L SR T PTLLNSRQGTHLER R S CFRR+S GG+*+RVSNFLMPS
Sbjct: 705 QYLPS*YPGDLWFSR*TNPTLLNSRQGTHLERSRYSICFRRSSTVSGGR*ERVSNFLMPS 526
Query: 221 IGHT 210
IGHT
Sbjct: 525 IGHT 514
Score = 57.9 bits (120), Expect(2) = 1e-60
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = -3 / -2
Query: 143 TGRPAVDLSPWKGATVVADEAITAGAM 63
TG PAVDLSPWKGATVVAD+AIT GA+
Sbjct: 344 TGMPAVDLSPWKGATVVADDAITEGAI 264
Score = 196 bits (422), Expect(3) = 2e-59
Identities = 87/126 (69%), Positives = 99/126 (78%)
Frame = +3 / +1
Query: 201 MHAGVAD*GHQEVRDPVLLATPLHGGPPEAGRLPDPLQVGALPRVQQGWLRLP*AQQLPR 380
++ GVAD*GHQEVRDP+L AT GGPPEA R+P P QVGALPRVQQG +RLP* Q+PR
Sbjct: 505 VYLGVAD*GHQEVRDPLLPATAHRGGPPEADRVPAPFQVGALPRVQQGRIRLP*EPQIPR 684
Query: 381 VLRRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP*RLRPHHRL*QPAAGAVRQLHRLQA 560
+LR +LD+VEAA+V VH RH GAQ GQEGVP* +RP+HRL Q AGA QLHRLQA
Sbjct: 685 ILRWQVLDHVEAAHVRVH*RHPGAQGARGGQEGVP*CIRPYHRLRQRQAGAAHQLHRLQA 864
Query: 561 TGLRGV 578
GLRGV
Sbjct: 865 PGLRGV 882
Score = 48.3 bits (99), Expect(3) = 2e-59
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +3 / +3
Query: 66 GPSRDGFVSHHRRPLPGAQVHR 131
GP RDG V HHRR LPGAQVHR
Sbjct: 267 GPLRDGVVGHHRRSLPGAQVHR 332
Score = 24.4 bits (47), Expect(3) = 2e-59
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +3 / +3
Query: 186 WRKDQMHAG 212
WR+DQ+HAG
Sbjct: 387 WRQDQVHAG 413
Score = 99.6 bits (211), Expect(4) = 4e-30
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = -2 / -3
Query: 363 LTEDEANLAELEAGHPLGADQVVDLLQEGLRGEGWQVRQGLELLDALNRPHLH 205
LT DE++LAELEAGHPLG +QV+DLLQE L GE WQV +GLELLDALNRPHL+
Sbjct: 667 LTVDESDLAELEAGHPLGTEQVLDLLQEVLHGERWQVGEGLELLDALNRPHLN 509
Score = 40.9 bits (83), Expect(4) = 4e-30
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -2 / -3
Query: 552 GDEADALHLPQVVKADDADVGVR 484
GDEAD LHLP VV+ADD D +R
Sbjct: 856 GDEADELHLPDVVEADDTDECIR 788
Score = 26.7 bits (52), Expect(4) = 4e-30
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 441 GVGAPKHRQLPH 406
GV AP+H QLPH
Sbjct: 745 GVSAPEHGQLPH 710
Score = 25.8 bits (50), Expect(4) = 4e-30
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1 / -3
Query: 97 WWLTKPSRLGP 65
WW T PSR GP
Sbjct: 298 WWPTTPSRRGP 266
Score = 73.0 bits (153), Expect(3) = 3e-20
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / -2
Query: 442 WRRCTQT*AASTLSSIGRRSTRGSCCAHGRRSQPC*TRGRAPT 314
WR+CT+T AAST SS RS RG C +HGRR +PC*TRGRAPT
Sbjct: 746 WRQCTRTWAASTWSSTCHRSIRGICGSHGRRIRPC*TRGRAPT 618
Score = 37.3 bits (75), Expect(3) = 3e-20
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -1 / -2
Query: 262 VASKTGSRTS*CPQSATP 209
VA + GSRTS*CPQSATP
Sbjct: 566 VAGRRGSRTS*CPQSATP 513
Score = 25.8 bits (50), Expect(3) = 3e-20
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / -2
Query: 580 RTPRNPVA*RR*S*RTAPA 524
+TPR+P A RR*S* APA
Sbjct: 884 QTPRSPGACRR*S**AAPA 828
Score = 41.8 bits (85), Expect(4) = 3e-12
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +2 / +3
Query: 209 RCGRLRASRSSRPCLTCH 262
RCGRLRASRSSRP TCH
Sbjct: 513 RCGRLRASRSSRPSPTCH 566
Score = 33.6 bits (67), Expect(4) = 3e-12
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 407 CGSCLCLGAPTPHRCS 454
CGSC C GA TP RCS
Sbjct: 711 CGSCPCSGALTPPRCS 758
Score = 32.7 bits (65), Expect(4) = 3e-12
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 524 GRCSASASSPSGHRVARS 577
GRCS+SASSP+ R ARS
Sbjct: 828 GRCSSSASSPTSPRAARS 881
Score = 23.1 bits (44), Expect(4) = 3e-12
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +2
Query: 37 SPPSSLRTTMAPAVMASSATTVAPFQG 117
SPP + + APA AS+ + +A G
Sbjct: 323 SPPPACPSPAAPATPASATSAMAAGSG 403
>LOC_Os02g05830:12002.t00481:unspliced-genomic ribulose bisphosphate carboxylase small chain SSU40B, chloroplast|
precursor, putative, expressed
Length = 1519
Score = 132 bits (283), Expect(2) = 5e-41
Identities = 46/78 (58%), Positives = 60/78 (76%)
Frame = +1 / +3
Query: 346 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNLR 525
G + R ++ PGYYDGRYWT+WKLPMFGC+DA VL EVEE ++EYPDA++R+I FD+ R
Sbjct: 750 GEIHRSNSRMPGYYDGRYWTLWKLPMFGCSDAAAVLREVEECRREYPDAFIRLIAFDSSR 929
Query: 526 QVQCVSFIAFRPPGCEES 579
Q QC+SF+ +PP S
Sbjct: 930 QCQCMSFVVHKPPSAAAS 983
Score = 59.3 bits (123), Expect(2) = 5e-41
Identities = 18/38 (47%), Positives = 31/38 (81%)
Frame = +1 / +2
Query: 232 KKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKV 345
+++E +SYLPPLS +++ K++++++ WVPCLEF KV
Sbjct: 491 RRYEAMSYLPPLSAKSISKEIEFIMSKGWVPCLEFDKV 604
Score = 71.2 bits (149), Expect(2) = 7e-15
Identities = 38/79 (48%), Positives = 42/79 (53%)
Frame = -3 / -1
Query: 578 DSSQPGGLKAMKLTHCTCRRLSKPMMRT*ASGYXXXXXXXXXXTCVASVHPNIGSFHIVQ 399
+++ GGL K H R LSK M R ASGY T AS HPNIGSFH VQ
Sbjct: 982 EAAADGGLWTTKDMHWHWRLLSKAMRRMKASGYSLRHSSTSRSTAAASEHPNIGSFHSVQ 803
Query: 398 YRPS*YPGELLCSRKTKPT 342
Y PS*YPG L R P+
Sbjct: 802 YLPS*YPGIRLLLRWISPS 746
Score = 32.7 bits (65), Expect(2) = 7e-15
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2 / -1
Query: 342 LAELEAGHPLGADQVVDLLQEGLRGEGWQVRQGL 241
L +LEA P +DLL +GLR +G QVR L
Sbjct: 601 LVKLEARDPSFGHDELDLLGDGLRAQGRQVRHRL 500
Score = 53.8 bits (111), Expect(2) = 2e-08
Identities = 32/60 (53%), Positives = 34/60 (56%)
Frame = +3 / +2
Query: 381 VLRRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP*RLRPHHRL*QPAAGAVRQLHRLQA 560
VLRR +LD VEAA V + R GA GG EGVP RL P HRL Q V L R QA
Sbjct: 785 VLRREVLDAVEAADVRML*RGGGAPGGGGMPEGVPGRLHPPHRLRQQPPVPVHVLRRPQA 964
Score = 28.1 bits (55), Expect(2) = 2e-08
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3 / +1
Query: 231 QEVRDPVLLATPLHGGPPEAGRLPDPLQVGALPRVQQG 344
QEVR VL A+P + R+ ++G LPRV QG
Sbjct: 490 QEVRGDVLPASPEREVHLQGDRVHHVQRMGPLPRV*QG 603
Score = 35.4 bits (71), Expect(2) = 0.034
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2 / +1
Query: 404 QCGSCLCLGAPTPHRCSTRWK 466
+CGSC C A T RCS RW+
Sbjct: 808 RCGSCRCSDALTRRRCSGRWR 870
Score = 24.9 bits (48), Expect(2) = 0.034
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2 / +3
Query: 206 CRCGRLRASRSSRPCLTC 259
CR G L + +R CLTC
Sbjct: 465 CRHGTLSPTGGTRRCLTC 518
Score = 31.8 bits (63), Expect(2) = 0.67
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1 / -2
Query: 439 RRCTQT*AASTLSSIGRRSTRGSCCAHGRRSQP 341
R+ +T AAST SS RRST S C G P
Sbjct: 843 RQSIRTSAASTASSTSRRSTPASGCCSGGSPPP 745
Score = 24.0 bits (46), Expect(2) = 0.67
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / -2
Query: 344 TLLNSRQGTH 315
TL NSRQGTH
Sbjct: 603 TLSNSRQGTH 574
>LOC_Os07g36070:12007.t03279:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3502
Score = 30.4 bits (60), Expect(3) = 0.15
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2 / -2
Query: 521 CGRCSASASSPSGHRVAR 574
C RC ASASSP+G V+R
Sbjct: 375 CRRCWASASSPTGRLVSR 322
Score = 24.9 bits (48), Expect(3) = 0.15
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3 / -1
Query: 246 PVLLATPLHGGPPEAGRLPDPLQVGALPRVQQG 344
P+ L+TP A P P GA P QG
Sbjct: 2854 PLTLSTPSTSSRSAASTPPSPSTTGAWPGYVQG 2756
Score = 23.1 bits (44), Expect(3) = 0.15
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1 / -2
Query: 16 PAKLAIGSPPSSLRTTMAPAVMASSATTVAPFQGLKSTA 132
P + SPPSS P+ ++SA T STA
Sbjct: 3363 PTTASPPSPPSSRSRGSVPSAASTSARTARFSMASTSTA 3247
>LOC_Os04g39720:12004.t03539:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3116
Score = 26.3 bits (51), Expect(2) = 0.74
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3 / +1
Query: 396 ILDNVEAAYVWVHRRHTGAQRGGRGQEGVP 485
I+ V A+ W R H GA RG++ P
Sbjct: 892 IMQAVGASGEWAPRGHDGAGGSRRGEQSTP 981
Score = 25.8 bits (50), Expect(2) = 0.74
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3 / +3
Query: 243 DPVLLATPLHGGPPEAGRLPDPLQ 314
DP + L GG P R P PLQ
Sbjct: 792 DPTGAESQLRGGIPHPPRCPPPLQ 863
>LOC_Os10g42110:12010.t03440:unspliced-genomic ATP binding protein, putative, expressed|
Length = 4243
Score = 29.0 bits (57), Expect(2) = 0.98
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3 / +3
Query: 375 PRVLRRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP 485
P + PIL + A +W+H G RGG G P
Sbjct: 666 PDLAMPPILLTITAFLLWLHCIAGGGGRGGEGAPQAP 776
Score = 22.6 bits (43), Expect(2) = 0.98
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2 / +2
Query: 524 GRCSASASSPSGHRVARS 577
GRC+ SASS S R+
Sbjct: 755 GRCATSASSTSSDAAPRA 808
>LOC_Os06g06150:12006.t00501:unspliced-genomic RING-H2 finger protein ATL5H precursor, putative, expressed|
Length = 737
Score = 29.9 bits (59), Expect(2) = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2 / +1
Query: 530 CSASASSPSGHRVARSPAR 586
CS SA SPS ++RSPAR
Sbjct: 322 CSTSAPSPSPRSMSRSPAR 378
Score = 24.0 bits (46), Expect(2) = 1.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / +2
Query: 17 LPS*LSAPHLAVYVPPWPQ 73
LPS L P L V PWP+
Sbjct: 5 LPSNLDRPFLDRTVDPWPK 61
>LOC_Os04g26140:12004.t02321:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 8938
Score = 29.9 bits (59), Expect(2) = 1.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2 / +2
Query: 521 CGRCSASASSPSGHRVAR 574
C RC AS SSP+G V+R
Sbjct: 1934 CHRCGASTSSPTGRLVSR 1987
Score = 27.2 bits (53), Expect(2) = 1.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2 / +1
Query: 194 GSDACRCGRLRASR 235
GS CRCGRLR R
Sbjct: 1570 GSYGCRCGRLRLHR 1611
>LOC_Os04g25610:12004.t02268:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3190
Score = 25.8 bits (50), Expect(2) = 1.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2 / +1
Query: 212 CGRLRASRSSRPCLTCH 262
CGR R SR R C T H
Sbjct: 2611 CGRKRLSRPPRSCRTHH 2661
Score = 25.4 bits (49), Expect(2) = 1.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1 / +3
Query: 127 TAGLPVSRRSGSAGLSSVSNGGRIRCMQVWP 219
++GLP+SRR + ++ GR+R P
Sbjct: 2541 SSGLPISRRGKKSWTRGRASAGRLRAKAT*P 2633
>LOC_Os11g07680:12011.t00659:unspliced-genomic dirigent-like protein pDIR7, putative, expressed|
Length = 727
Score = 27.2 bits (53), Expect(2) = 1.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / -2
Query: 530 CSASASSPSGHRVARSPAR 586
C + SPSG R SPAR
Sbjct: 372 CPSGGRSPSGRRTCTSPAR 316
Score = 26.3 bits (51), Expect(2) = 1.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -2
Query: 206 CRCGRLRASRSSRP 247
CRCGR R +RSS P
Sbjct: 408 CRCGRRR*TRSSCP 367
>LOC_Os03g20190:12003.t01778:unspliced-genomic pentatricopeptide repeat protein PPR868-14, putative, expressed|
Length = 2774
Score = 25.8 bits (50), Expect(2) = 1.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2 / +3
Query: 410 GSCLCLGAPTPHRCSTR 460
G+C +PTP CS+R
Sbjct: 390 GTCATASSPTPSACSSR 440
Score = 24.9 bits (48), Expect(2) = 1.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3 / +1
Query: 282 PEAGRLPDPLQVGALPR 332
P AGR P PL ALPR
Sbjct: 211 PPAGRGPRPLPPHALPR 261
>LOC_Os04g11810:12004.t01005:unspliced-genomic acyltransferase, putative, expressed|
Length = 1326
Score = 29.9 bits (59), Expect(2) = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3 / -1
Query: 498 PHHRL*QPAAGAVRQLHRLQATGLRGVRQGIK 593
P H +PAAG +R LH Q GL R+ ++
Sbjct: 486 PRHADDEPAAGELRHLHEQQRVGLGLSRRRVR 391
Score = 24.0 bits (46), Expect(2) = 1.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -1
Query: 87 VSHHRRPLPGAQVHR 131
++HH R P A+VHR
Sbjct: 1194 MAHHPRRPPAAEVHR 1150
>LOC_Os08g44870:12008.t04260:unspliced-genomic transparent testa 12 protein, putative, expressed|
Length = 2051
Score = 28.6 bits (56), Expect(2) = 2.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 255 LATPLHGGPPEAGRLPDPL 311
+A +HGG P GRLP P+
Sbjct: 756 VARVVHGGVPRPGRLPPPV 812
Score = 25.8 bits (50), Expect(2) = 2.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3 / +3
Query: 495 RPHHRL*QPAAGAVRQLHRLQATGLRGVRQ 584
R HH Q AAGAVR R + G R + Q
Sbjct: 1176 RGHHGAQQRAAGAVRCGRRRRMAGPRRLHQ 1265
>LOC_Os02g54720:12002.t05050:unspliced-genomic expressed protein|
Length = 3332
Score = 24.0 bits (46), Expect(4) = 2.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +2
Query: 197 SDACRCGRLRASRSSRPC 250
S C R RAS +SRPC
Sbjct: 1070 SARCTTRRWRASGTSRPC 1123
Score = 23.1 bits (44), Expect(4) = 2.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1 / +2
Query: 70 PAVMASSATTVAPFQGLKSTAGLPVSRRSGSAGLSS 177
P ASS+T+ + A P S+RSG S+
Sbjct: 857 PGAPASSSTSATCSGSSRRDAWPPASKRSGGTWCST 964
Score = 22.1 bits (42), Expect(4) = 2.4
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1 / +3
Query: 391 GRYWTMWKLP 420
GR WT+W P
Sbjct: 2211 GRRWTVWPTP 2240
Score = 22.1 bits (42), Expect(4) = 2.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3 / +1
Query: 726 RRPRRMHMRIIAPAIHTSFAAG 791
RRPRR H+R H + G
Sbjct: 2368 RRPRRSHLRRHVAGRHEAVPRG 2433
>LOC_Os01g03950:12001.t00284:unspliced-genomic alpha-D-xylosidase, putative, expressed|
Length = 4888
Score = 29.9 bits (59), Expect(2) = 2.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1 / +2
Query: 391 RRSTRGSCCAHGRRSQPC*TRGRAP 317
RRSTR +C RS C GR+P
Sbjct: 3893 RRSTRSTCTCSRTRSSRCSAAGRSP 3967
Score = 25.4 bits (49), Expect(2) = 2.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3 / +1
Query: 596 ALYALPDSSQPGGLK 552
ALY L +++QPGG++
Sbjct: 1252 ALYGLGENTQPGGIR 1296
>LOC_Os08g23640:12008.t02136:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 1858
Score = 29.5 bits (58), Expect(2) = 2.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1 / -2
Query: 103 APFQGLKSTAGLPVSRRSGSAGLSSVSNGGRIRCMQVWP 219
APF ++TA ++R + + ++S +GGR+ C+ + P
Sbjct: 984 APFGWPRATAPSCLTRGTSNTFVASTPSGGRVSCLGLRP 868
Score = 24.4 bits (47), Expect(2) = 2.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +1 / -3
Query: 367 NSSPGYYDGRYWTMWKLPMFGCTDA 441
N+S G + WTMW C A
Sbjct: 197 NASRGAVPSKLWTMWSAASRTCARA 123
>LOC_Os06g05820:12006.t00468:unspliced-genomic DNA repair protein radA, putative, expressed|
Length = 9234
Score = 25.8 bits (50), Expect(2) = 3.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3 / +2
Query: 435 RRHTGAQRGGRGQEGVP*RLRPHHRL*QPA 524
R G RGGRG V R RPH PA
Sbjct: 335 RVRLGGPRGGRGLGRVRRRDRPHRHEGAPA 424
Score = 24.0 bits (46), Expect(2) = 3.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3 / +2
Query: 264 PLHGGPPEAGRLPDPLQVGALPRVQQGWLRLP*AQQLPR 380
P PP A P PL + LPR ++ L A + PR
Sbjct: 197 PTPSPPPPAAPAPHPLPLLFLPRRRRRMGLLRPADRQPR 313
>LOC_Os05g37700:12005.t03312:unspliced-genomic periplasmic beta-glucosidase precursor, putative, expressed|
Length = 4490
Score = 24.9 bits (48), Expect(2) = 3.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1 / -1
Query: 394 GRRSTRGSCCAHGRR 350
GRR R CC GRR
Sbjct: 470 GRRWRRRRCCGRGRR 426
Score = 24.9 bits (48), Expect(2) = 3.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3 / -1
Query: 365 CSRKTKPTLLNSRQGTHLERIR*STCFRRASVERG 261
C R P+ R G R R* C RRA RG
Sbjct: 371 CRRPCGPSRRRRRGGAGRSRRR*GRCRRRARRWRG 267
>LOC_Os04g20880:12004.t01822:unspliced-genomic wax synthase isoform 1, putative, expressed|
Length = 1271
Score = 24.0 bits (46), Expect(3) = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1 / -3
Query: 19 AKLAIGSPPSSLRTTMAP 72
A AI SPP++ RTT P
Sbjct: 948 AGAAISSPPTASRTTPPP 895
Score = 23.5 bits (45), Expect(3) = 3.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +1 / -3
Query: 139 PVSRRSGSAGLSSVSNGGRIRCMQVWP 219
P RR G + G R RC WP
Sbjct: 345 PGRRRGGRP*RRRATRGRRRRCRGAWP 265
Score = 23.1 bits (44), Expect(3) = 3.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / -1
Query: 438 RHTGAQRGGRGQEG 479
RH QRG RG +G
Sbjct: 173 RHARVQRGSRGGQG 132
>LOC_Os03g53170:12003.t04640:unspliced-genomic methyltransferase small domain, putative, expressed|
Length = 4684
Score = 31.8 bits (63), Expect(2) = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1 / +1
Query: 37 SPPSSLRTTMAPAVMASSATTVAPFQGLKSTAGLPVSRR 153
SPPS RTT AP +SS + +AP ++ L RR
Sbjct: 475 SPPSPSRTTRAPPRPSSSTSPLAPTSTSTTSCSLRPRRR 591
Score = 23.1 bits (44), Expect(2) = 3.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3 / +3
Query: 714 STYQRRPRRMHMRIIAPAIH 773
S+ RRP ++M ++A +IH
Sbjct: 606 SSPSRRPAALYMSMLASSIH 665
>LOC_Os10g16880:12010.t01250:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
Length = 4865
Score = 25.8 bits (50), Expect(3) = 3.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3 / +3
Query: 261 TPLHGGPPEAGRLPDPLQVGALP 329
T +H GPP A + P P +P
Sbjct: 828 TAVHRGPPPAAQPPGPAAEAGIP 896
Score = 25.4 bits (49), Expect(3) = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2 / +2
Query: 527 RCSASASSPSGHRVARSPARHK 592
R + S P GHR A S +RH+
Sbjct: 968 RAAYSRRRPPGHRPAPSSSRHR 1033
Score = 23.1 bits (44), Expect(3) = 3.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 93 HHRRPLPGAQVHR 131
HHRR P Q+HR
Sbjct: 222 HHRRRRPRHQLHR 260
>LOC_Os07g06740:12007.t00553:unspliced-genomic calcium-dependent protein kinase, isoform AK1, putative, expressed|
Length = 4814
Score = 24.9 bits (48), Expect(2) = 4.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 524 GRCSASASSPSGHRVAR 574
GRCS ++ SPSG AR
Sbjct: 574 GRCSPASPSPSGSWSAR 624
Score = 24.4 bits (47), Expect(2) = 4.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 450 AQRGGRGQEGVP*RLRPHHRL 512
AQ R + G P RLRP RL
Sbjct: 422 AQGEARPERGAPRRLRPQARL 484
>LOC_Os01g03549:12001.t00245:unspliced-genomic copper ion binding protein, putative, expressed|
Length = 8522
Score = 26.7 bits (52), Expect(3) = 4.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3 / -1
Query: 726 RRPRRMHMRIIAPAIHTSFAAGKK 797
R P R+H R++ A+H A G++
Sbjct: 7115 RLPLRVHARVVPRAVHEQRAVGEE 7044
Score = 24.4 bits (47), Expect(3) = 4.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3 / -3
Query: 447 GAQRGGRGQEGVP*RLRPHHRL*QPAAGA 533
G+ GGRG P R R R PAA A
Sbjct: 7188 GSGGGGRGGTATPCRWRRRRRRSTPAATA 7102
Score = 24.0 bits (46), Expect(3) = 4.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3 / -1
Query: 252 LLATPLHGGPPEAGRLP 302
LL +HG PP RLP
Sbjct: 7610 LLGVLVHGDPPHQHRLP 7560
>LOC_Os07g13780:12007.t01243:unspliced-genomic cytokinin-O-glucosyltransferase 2, putative, expressed|
Length = 597
Score = 27.2 bits (53), Expect(2) = 4.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3 / +3
Query: 447 GAQRGGRGQEGVP*RLRPHHRL*QP 521
GA+ GGR + G R P HRL P
Sbjct: 345 GARLGGRRRRGAAQRRVPRHRLPSP 419
Score = 22.1 bits (42), Expect(2) = 4.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 434 PTPHRCSTRW 463
PT RCS RW
Sbjct: 332 PTSARCSPRW 361
>LOC_Os06g10510:12006.t00929:unspliced-genomic expressed protein|
Length = 1005
Score = 25.4 bits (49), Expect(3) = 5.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2 / -3
Query: 533 SASASSPSGHRVARSPARH 589
S S+++P+G R +RS +RH
Sbjct: 175 SRSSTAPAGGRCSRSSSRH 119
Score = 22.1 bits (42), Expect(3) = 5.0
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3 / -3
Query: 387 RRPILDNVEAAYVWVHRRHTGAQRGGRGQEGVP*RLR 497
RRP + RRH G +R R +P R R
Sbjct: 478 RRPCPSAARGGT*GLRRRHGGRRRRRRRSRPIPARRR 368
Score = 21.7 bits (41), Expect(3) = 5.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3 / -2
Query: 57 YHHGPSRDGFVSHHRR 104
+HHG + F + HRR
Sbjct: 671 FHHGFTCTSFCNSHRR 624
>LOC_Os11g30540:12011.t02657:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 2833
Score = 25.8 bits (50), Expect(2) = 5.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3 / +3
Query: 243 DPVLLATPLHGGPPEAGRLPDPLQ 314
DP + L GG P R P PLQ
Sbjct: 792 DPTGAESQLRGGIPHPPRCPPPLQ 863
Score = 23.1 bits (44), Expect(2) = 5.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3 / +1
Query: 396 ILDNVEAAYVWVHRRHTGAQRGGRGQEGVP 485
I+ V A+ R H GA R RG++ P
Sbjct: 892 IMQAVGASGERAPRGHDGAGRSRRGEQSTP 981
>LOC_Os03g16450:12003.t01428:unspliced-genomic pentatricopeptide repeat protein PPR868-14, putative, expressed|
Length = 2497
Score = 26.3 bits (51), Expect(2) = 6.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 431 APTPHRCSTRWK 466
+P P RCST+W+
Sbjct: 416 SPAPARCSTKWR 451
Score = 22.6 bits (43), Expect(2) = 6.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3 / +3
Query: 264 PLHGGPPEAGRLPDPLQVGA 323
P HGGP GR P ++ A
Sbjct: 237 PWHGGPLAGGRAHGPPRLRA 296
>LOC_Os03g41980:12003.t03606:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 6161
Score = 29.9 bits (59), Expect(2) = 7.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1 / +3
Query: 103 APFQGLKSTAGLPVSRRSGSAGLSSVSNGGRIRCMQVWP 219
APF ++TA ++R + + ++S +GGR+ C+ + P
Sbjct: 5841 APFGWPRATAQSCLTRGTSNTFVASTPSGGRVSCLGLGP 5957
Score = 24.0 bits (46), Expect(2) = 7.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3 / +2
Query: 60 HHGPSRDGFVSHHRRPLP 113
H P + G SH R P P
Sbjct: 4577 HRAPLKKGLPSHRRDPTP 4630
>LOC_Os01g08470:12001.t00725:unspliced-genomic protein binding protein, putative, expressed|
Length = 2275
Score = 29.0 bits (57), Expect(2) = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1 / +2
Query: 37 SPPSSLRTTMAPAVMASSATTVAPFQGLKSTAGLPVSRRSGS 162
+P SS T A +SAT +P ++TA SRR+ +
Sbjct: 704 TPSSSTTTASASTSRTTSATRRSPSSSSRTTASAAASRRASA 829
Score = 23.5 bits (45), Expect(2) = 7.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2 / +2
Query: 533 SASASSPSGHRVARSPAR 586
S + SSP+ R AR+P R
Sbjct: 1076 SRTTSSPASRRPARTPCR 1129
>LOC_Os04g01470:12004.t00045:unspliced-genomic caffeic acid 3-O-methyltransferase, putative, expressed|
Length = 2607
Score = 29.5 bits (58), Expect(2) = 8.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1 / +2
Query: 40 PPSSLRTTMAPAVMASSATTVAPFQGLKSTAGLPVSRRSGSAGLSSVSNGG 192
P R + PAV AS+ V + + TAG RR L SV+ GG
Sbjct: 266 PDRHWRRSSCPAVHASAGVQVVCRRKVSGTAGHVPPRRRLPEHLESVAGGG 418
Score = 23.1 bits (44), Expect(2) = 8.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2 / +3
Query: 521 CGRCSASASSPSGHRVARSPARH 589
C RCS + + R +RS +H
Sbjct: 2145 CSRCSTYITMRTASRSSRSATKH 2213
>LOC_Os08g44680:12008.t04191:unspliced-genomic photosystem I reaction center subunit II, chloroplast precursor,|
putative, expressed
Length = 1006
Score = 24.4 bits (47), Expect(2) = 8.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1 / +1
Query: 400 SIGRRSTRGSCCAHGRR 350
S GRR R S +HGRR
Sbjct: 373 SSGRRRWRSSTSSHGRR 423
Score = 24.0 bits (46), Expect(2) = 8.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1 / +1
Query: 244 SRTS*CPQSATPAC 203
SR S CP++A P+C
Sbjct: 430 SRCSRCPRAAPPSC 471
>LOC_Os04g57490:12004.t05215:unspliced-genomic cysteine protease 1 precursor, putative, expressed|
Length = 1913
Score = 29.9 bits (59), Expect(2) = 8.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1 / +3
Query: 112 QGLKSTAGLPVSRRSGSAGLSSVSNGGRIR 201
QG G+P RR G+AGL + GR R
Sbjct: 525 QGAPRRGGVPPRRRRGAAGLRGLEGQGRRR 614
Score = 22.1 bits (42), Expect(2) = 8.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 66 GPSRDGFVSHHRR 104
G SR+GF+ H R
Sbjct: 334 GGSRNGFIGEHER 372
>LOC_Os07g13634:12007.t01227:unspliced-genomic cytokinin-N-glucosyltransferase 1, putative, expressed|
Length = 16870
Score = 25.8 bits (50), Expect(2) = 9.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2 / +1
Query: 212 CGRLRASRSSRPCLTCH 262
CGR R SR R C T H
Sbjct: 6007 CGRKRLSRPPRSCRTHH 6057
Score = 22.1 bits (42), Expect(2) = 9.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1 / +3
Query: 127 TAGLPVSRRSGSAGLSSVSNGGRIRCMQVWP 219
++GLP SRR + + GR+R P
Sbjct: 5937 SSGLPTSRRGKRSWTRGRVSAGRLRAKAT*P 6029
>LOC_Os03g25360:12003.t02229:unspliced-genomic peroxidase 66 precursor, putative, expressed|
Length = 1486
Score = 28.1 bits (55), Expect(2) = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1 / +1
Query: 16 PAKLAIGSPPSSLRTTMAPAVMASSATTVA 105
P+ A +PPSS APA A S+TT +
Sbjct: 250 PSSGAPSAPPSSATPASAPASSACSSTTAS 339
Score = 23.5 bits (45), Expect(2) = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3 / +1
Query: 516 QPAAGAVRQLHRLQATGLRGVRQ 584
QPAAG R + Q LRG R+
Sbjct: 760 QPAAGEARPAQQPQPPRLRGHRR 828
>LOC_Os12g39670:12012.t03646:unspliced-genomic hypothetical protein|
Length = 8300
Score = 24.4 bits (47), Expect(2) = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3 / +2
Query: 231 QEVRDPVLLATPLHGGPPEA 290
Q VRD L A PL PP++
Sbjct: 638 QAVRDVYLFACPLSDPPPQS 697
Score = 23.5 bits (45), Expect(2) = 9.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1 / +2
Query: 370 SSPGYYDGRYWTMWKLPMFG 429
+S G GR+W W+L G
Sbjct: 803 ASAGRRGGRWWRRWRLAAGG 862
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 313,032,455
Number of extensions: 5100757
Number of successful extensions: 29188
Number of sequences better than 10.0: 100
Length of query: 269
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 220
Effective length of database: 52,856,264
Effective search space: 11628378080
Effective search space used: 11628378080
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)