No.
Definition
Score (bits)
E Value
1 emb|CT833046.1| Oryza sativa (indica cultivar-group) cDNA clone:...
204
1e-48
2 ref|NM_001049059.1| Oryza sativa (japonica cultivar-group) Os01g...
204
1e-48
3 gb|AY625681.1| Oryza sativa (japonica cultivar-group) bHLH trans...
204
1e-48
4 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
204
1e-48
5 dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D...
204
1e-48
6 dbj|AK121013.1| Oryza sativa (japonica cultivar-group) cDNA clon...
204
1e-48
7 dbj|AK064943.1| Oryza sativa (japonica cultivar-group) cDNA clon...
204
1e-48
8 gb|AY625684.1| Triticum aestivum bHLH transcription factor (bHLH...
168
6e-38
9 gb|AY111157.1| Zea mays CL6102_1 mRNA sequence
153
3e-33
10 gb|AY109226.1| Zea mays PCO075741 mRNA sequence
111
1e-20
11 gb|DQ078120.1| Rheum australe basic helix-loop-helix transcripti...
74
3e-09
12 gb|AF283507.1| Catharanthus roseus MYC2 (myc2) mRNA, complete cds
68
2e-07
13 ref|NM_117738.2| Arabidopsis thaliana DNA binding / transcriptio...
66
6e-07
14 gb|AF251688.1|AF251688 Arabidopsis thaliana putative transcripti...
66
6e-07
15 gb|AY057626.1| Arabidopsis thaliana AT4g16430/dl4240w mRNA, comp...
66
6e-07
16 emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA ...
66
6e-07
17 emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, ...
66
6e-07
18 gb|BT002301.1| Arabidopsis thaliana At4g16430/dl4240w mRNA, comp...
66
6e-07
19 gb|AF428368.1|AF428368 Arabidopsis thaliana AT4g16430/dl4240w mR...
58
1e-04
20 emb|BX827421.1|CNS0A49A Arabidopsis thaliana Full-length cDNA Co...
58
1e-04
21 emb|AJ630505.1| Solanum tuberosum partial mRNA for MYC transcrip...
54
0.002
22 gb|AF011557.1|AF011557 Lycopersicon esculentum jasmonic acid 3 (...
48
0.14
23 ref|NM_100009.2| Arabidopsis thaliana DNA binding / transcriptio...
46
0.57
24 gb|AY120752.1| Arabidopsis thaliana transcription factor MYC7E, ...
46
0.57
25 gb|AY079012.1| Arabidopsis thaliana At1g01260/F6F3_25 mRNA, comp...
46
0.57
26 gb|AF251698.1|AF251698 Arabidopsis thaliana putative transcripti...
46
0.57
27 gb|AF488559.1| Arabidopsis thaliana clone bHLH013 putative bHLH ...
46
0.57
28 emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chr...
46
0.57
29 gb|AC008403.8| Homo sapiens chromosome 19 clone CTC-273B12, comp...
46
0.57
30 gb|BT004517.1| Arabidopsis thaliana At1g01260/F6F3_25 gene, comp...
46
0.57
31 gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F...
46
0.57
32 emb|BX814931.1|CNS0AALZ Arabidopsis thaliana Full-length cDNA Co...
46
0.57
33 ref|XM_001138049.1| PREDICTED: Pan troglodytes similar to 170002...
44
2.2
34 gb|AC145785.3| Xenopus tropicalis clone CH216-102H4, complete se...
44
2.2
35 gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete s...
44
2.2
36 gb|AC185985.3| Pan troglodytes BAC clone CH251-409M14 from chrom...
44
2.2
37 emb|CR855387.11| Zebrafish DNA sequence from clone DKEY-282H22 i...
44
2.2
38 gb|AE010369.1| Methanopyrus kandleri AV19 section 68 of 157 of t...
44
2.2
39 gb|AC008225.4| Drosophila melanogaster clone BACR03E11, complete...
44
2.2
40 gb|AC113542.13| Mus musculus chromosome 5, clone RP23-195A18, co...
44
2.2
41 ref|NM_169177.1| Drosophila melanogaster stranded at second CG25...
44
2.2
42 gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, co...
44
2.2
43 ref|NM_057263.2| Drosophila melanogaster stranded at second CG25...
44
2.2
44 ref|XM_387494.1| Gibberella zeae PH-1 chromosome 4 hypothetical ...
44
2.2
45 ref|NM_199823.1| Danio rerio HIRA interacting protein 3 (hirip3)...
44
2.2
46 gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, co...
44
2.2
47 emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chr...
44
2.2
48 ref|XM_697034.1| PREDICTED: Danio rerio hypothetical protein LOC...
44
2.2
49 gb|AY051979.1| Drosophila melanogaster LD44801 full length cDNA
44
2.2
50 gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosom...
44
2.2
51 gb|AC007814.6|AC007814 Drosophila melanogaster, chromosome 3R, r...
44
2.2
52 gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, r...
44
2.2
53 emb|AJ630506.1| Solanum tuberosum partial mRNA for MYC transcrip...
44
2.2
54 gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal prot...
44
2.2
55 emb|AL929124.13| Zebrafish DNA sequence from clone CH211-128D23,...
44
2.2
56 gb|M68866.1|DROSAS Drosophila melanogaster stranded at second (s...
44
2.2
57 ref|XM_001187845.1| PREDICTED: Strongylocentrotus purpuratus sim...
42
8.8
58 gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co...
42
8.8
59 gb|AC149876.2| Xenopus tropicalis clone CH216-166O21, complete s...
42
8.8
60 ref|NM_203913.1| Xenopus tropicalis spermatogenesis associated, ...
42
8.8
61 gb|AC132437.3| Mus musculus BAC clone RP23-230M17 from chromosom...
42
8.8
62 gb|AC124709.3| Mus musculus BAC clone RP24-83P8 from chromosome ...
42
8.8
63 gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, com...
42
8.8
64 ref|XM_783101.1| PREDICTED: Strongylocentrotus purpuratus simila...
42
8.8
65 gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ...
42
8.8
66 gb|AC113268.8| Papio anubis clone rp41-22m16, complete sequence
42
8.8
67 gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cult...
42
8.8
68 gb|AC096760.3| Homo sapiens BAC clone RP11-577B11 from 4, comple...
42
8.8
69 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
42
8.8
70 gb|AC092325.2| Homo sapiens chromosome 16 clone RP11-14K3, compl...
42
8.8
71 gb|AC092357.2| Homo sapiens chromosome 16 clone RP11-332P24, com...
42
8.8
72 gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, comple...
42
8.8
73 emb|BX000690.46| Zebrafish DNA sequence from clone CH211-1C6, co...
42
8.8
74 gb|AC139720.1| Homo sapiens BAC clone RP11-223C24 from 4, comple...
42
8.8
75 emb|BX539348.8| Zebrafish DNA sequence from clone DKEY-273G16 in...
42
8.8
76 gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complet...
42
8.8
77 emb|CR760430.2| Xenopus tropicalis finished cDNA, clone TNeu064n07
42
8.8
78 gb|AC174760.1| Gasterosteus aculeatus clone VMRC26-231C14, compl...
42
8.8
79 emb|CT485704.1| Xenopus tropicalis finished cDNA, clone TEgg112i08
42
8.8
80 gb|U50191.3| Caenorhabditis elegans cosmid T14B4, complete sequence
42
8.8
81 emb|AL732588.6| Mouse DNA sequence from clone RP24-159M19 on chr...
42
8.8
>emb|CT833046.1 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA221E23, full
insert sequence
Length = 2566
Score = 204 bits (103), Expect = 1e-48
Identities = 181/207 (87%)
Strand = Plus / Plus
Query: 1608 agaaagaggggaagaaaaccagcaaatgggagagtagaggcactcaaccatgttgaggct 1667
||||||||||||||||| || ||||| ||||| | |||| |||| || |||||||||||
Sbjct: 1689 agaaagaggggaagaaagcctgcaaacgggagggaagagccactaaatcatgttgaggcc 1748
Query: 1668 gagcgccaaaggagggaaaaactcaaccagaggttctatgcactgagagctgttgttccc 1727
|||||||| |||||||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct: 1749 gagcgccagaggagggagaagctcaaccagcgattctatgcactgagagccgttgtaccc 1808
Query: 1728 aatatctcaaaaatggacaaagcatcactcctgggagatgccataacgcacatcactgat 1787
||||| |||||||||||||| ||||| ||||| || || |||||||| ||||||||||
Sbjct: 1809 aatatatcaaaaatggacaaggcatccctccttggtgacgccataacatacatcactgac 1868
Query: 1788 ctccagaagaagctcaaagagatggag 1814
|| ||||||||||||||||||||||||
Sbjct: 1869 ctacagaagaagctcaaagagatggag 1895
Score = 105 bits (53), Expect = 7e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 1251 ctccccaatgtccggaaaggtttgcagaacttcacatggagtcaggctcgaggcctgaat 1310
||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1275 ctccccaatgtccaaagaggtttgcagaatttcacttggagtcaggctcggggcctgaat 1334
Query: 1311 tctcatcaccagaaatttggcaatggtat 1339
|||||||| ||||| |||||||| |||||
Sbjct: 1335 tctcatcagcagaagtttggcaacggtat 1363
Score = 89.7 bits (45), Expect = 4e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 762 attgaccaggtgactgacactgagttattcttcctagcatctatgtactttgcatttcca 821
||||| |||||||| ||||| ||| | || || |||||||||||||||||||||||||||
Sbjct: 792 attgatcaggtgacagacacagagatgttttttctagcatctatgtactttgcatttcca 851
Query: 822 cgacatgtaggtggccctgggcaagtgtttgcaacaggtgcacccctttggattcctaac 881
|| | || ||||||||||| ||||| |||||| |||| | ||||| |||||||| |||
Sbjct: 852 cgccgtgctggtggccctggtcaagtatttgcagcaggcgtgcccctgtggattcccaac 911
Query: 882 a 882
|
Sbjct: 912 a 912
Score = 85.7 bits (43), Expect = 7e-13
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 1959 ttccaagcttttgaagaggcagaagtcaaagtgggcgaatcaaagatcacatccaacaat 2018
||||||||||| ||||||||||||||| | | || || || ||||||||| ||||||
Sbjct: 2040 ttccaagctttcgaagaggcagaagtccatgcaggggagtcgaagatcacaagcaacaac 2099
Query: 2019 gggacagttgtgcattccttcgttatcaagtcccctggctctgaacagcaaacaagggag 2078
|| || | |||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 2100 ggcacggccgtgcattctttcatcatcaagtgccctggcgccgaacagcaaacgagggag 2159
Query: 2079 aaattgattgccgcgatgtctcg 2101
|| |||||||||| ||||||||
Sbjct: 2160 aaggtgattgccgccatgtctcg 2182
Score = 61.9 bits (31), Expect = 1e-05
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 534 tggaactacgccatcttctggcaactctcccgcaccagatccggtgaacttgtccttggc 593
|||||||| ||||| |||||||| || || ||||| | |||||||| |||||||||||
Sbjct: 576 tggaactatgccatattctggcagctgtcgcgcacaaagtccggtgaccttgtccttgga 635
Query: 594 tggggtgacgggtcttgccgtga 616
||||| || || |||||||||||
Sbjct: 636 tggggggatggctcttgccgtga 658
Score = 58.0 bits (29), Expect = 1e-04
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 921 ggattccttgcaagtgcagcaggatttaggactattgtgctactgccattcgaagctggt 980
|||| |||||||| ||| ||||||||||| |||||||||||| | ||||| || | |||
Sbjct: 951 ggataccttgcaaatgctgcaggatttagaactattgtgctagttccatttgagaccggt 1010
Query: 981 gtacttgaa 989
|||||||||
Sbjct: 1011 gtacttgaa 1019
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2226 agaaagctcagattctgactt 2246
|||||||||||||||||||||
Sbjct: 2345 agaaagctcagattctgactt 2365
>ref|NM_001049059.1 | Oryza sativa (japonica cultivar-group) Os01g0235700 (Os01g0235700)
mRNA, complete cds
Length = 2525
Score = 204 bits (103), Expect = 1e-48
Identities = 181/207 (87%)
Strand = Plus / Plus
Query: 1608 agaaagaggggaagaaaaccagcaaatgggagagtagaggcactcaaccatgttgaggct 1667
||||||||||||||||| || ||||| ||||| | |||| |||| || |||||||||||
Sbjct: 1648 agaaagaggggaagaaagcctgcaaacgggagggaagagccactaaatcatgttgaggcc 1707
Query: 1668 gagcgccaaaggagggaaaaactcaaccagaggttctatgcactgagagctgttgttccc 1727
|||||||| |||||||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct: 1708 gagcgccagaggagggagaagctcaaccagcgattctatgcactgagagccgttgtaccc 1767
Query: 1728 aatatctcaaaaatggacaaagcatcactcctgggagatgccataacgcacatcactgat 1787
||||| |||||||||||||| ||||| ||||| || || |||||||| ||||||||||
Sbjct: 1768 aatatatcaaaaatggacaaggcatccctccttggtgacgccataacatacatcactgac 1827
Query: 1788 ctccagaagaagctcaaagagatggag 1814
|| ||||||||||||||||||||||||
Sbjct: 1828 ctacagaagaagctcaaagagatggag 1854
Score = 105 bits (53), Expect = 7e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 1251 ctccccaatgtccggaaaggtttgcagaacttcacatggagtcaggctcgaggcctgaat 1310
||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1234 ctccccaatgtccaaagaggtttgcagaatttcacttggagtcaggctcggggcctgaat 1293
Query: 1311 tctcatcaccagaaatttggcaatggtat 1339
|||||||| ||||| |||||||| |||||
Sbjct: 1294 tctcatcagcagaagtttggcaacggtat 1322
Score = 89.7 bits (45), Expect = 4e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 762 attgaccaggtgactgacactgagttattcttcctagcatctatgtactttgcatttcca 821
||||| |||||||| ||||| ||| | || || |||||||||||||||||||||||||||
Sbjct: 751 attgatcaggtgacagacacagagatgttttttctagcatctatgtactttgcatttcca 810
Query: 822 cgacatgtaggtggccctgggcaagtgtttgcaacaggtgcacccctttggattcctaac 881
|| | || ||||||||||| ||||| |||||| |||| | ||||| |||||||| |||
Sbjct: 811 cgccgtgctggtggccctggtcaagtatttgcagcaggcgtgcccctgtggattcccaac 870
Query: 882 a 882
|
Sbjct: 871 a 871
Score = 85.7 bits (43), Expect = 7e-13
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 1959 ttccaagcttttgaagaggcagaagtcaaagtgggcgaatcaaagatcacatccaacaat 2018
||||||||||| ||||||||||||||| | | || || || ||||||||| ||||||
Sbjct: 1999 ttccaagctttcgaagaggcagaagtccatgcaggggagtcgaagatcacaagcaacaac 2058
Query: 2019 gggacagttgtgcattccttcgttatcaagtcccctggctctgaacagcaaacaagggag 2078
|| || | |||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 2059 ggcacggccgtgcattctttcatcatcaagtgccctggcgccgaacagcaaacgagggag 2118
Query: 2079 aaattgattgccgcgatgtctcg 2101
|| |||||||||| ||||||||
Sbjct: 2119 aaggtgattgccgccatgtctcg 2141
Score = 67.9 bits (34), Expect = 2e-07
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 534 tggaactacgccatcttctggcaactctcccgcaccagatccggtgaacttgtccttggc 593
|||||||| ||||| |||||||| || || ||||| | |||||||| |||||||||||
Sbjct: 535 tggaactatgccatattctggcagctgtcgcgcacaaagtccggtgaccttgtccttgga 594
Query: 594 tggggtgacgggtcttgccgtgaaccccatgataatgagatg 635
||||| || || ||||||||||| || |||||| |||||||
Sbjct: 595 tggggggatggctcttgccgtgagcctcatgatggtgagatg 636
Score = 58.0 bits (29), Expect = 1e-04
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 921 ggattccttgcaagtgcagcaggatttaggactattgtgctactgccattcgaagctggt 980
|||| |||||||| ||| ||||||||||| |||||||||||| | ||||| || | |||
Sbjct: 910 ggataccttgcaaatgctgcaggatttagaactattgtgctagttccatttgagaccggt 969
Query: 981 gtacttgaa 989
|||||||||
Sbjct: 970 gtacttgaa 978
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2226 agaaagctcagattctgactt 2246
|||||||||||||||||||||
Sbjct: 2304 agaaagctcagattctgactt 2324
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
Length = 43261740
Score = 204 bits (103), Expect = 1e-48
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 1608 agaaagaggggaagaaaaccagcaaatgggagagtagaggcactcaaccatgttgaggct 1667
||||||||||||||||| || ||||| ||||| | |||| |||| || |||||||||||
Sbjct: 7494998 agaaagaggggaagaaagcctgcaaacgggagggaagagccactaaatcatgttgaggcc 7494939
Query: 1668 gagcgccaaaggagggaaaaactcaaccagaggttctatgcactgagagctgttgttccc 1727
|||||||| |||||||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct: 7494938 gagcgccagaggagggagaagctcaaccagcgattctatgcactgagagccgttgtaccc 7494879
Query: 1728 aatatctcaaaaatggacaaagcatcactcctgggagatgccataacgcacatcactgat 1787
||||| |||||||||||||| ||||| ||||| || || |||||||| ||||||||||
Sbjct: 7494878 aatatatcaaaaatggacaaggcatccctccttggtgacgccataacatacatcactgac 7494819
Query: 1788 ctccagaagaagctcaaagagatggag 1814
|| ||||||||||||||||||||||||
Sbjct: 7494818 ctacagaagaagctcaaagagatggag 7494792
Score = 105 bits (53), Expect = 7e-19
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 1251 ctccccaatgtccggaaaggtttgcagaacttcacatggagtcaggctcgaggcctgaat 1310
||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 7495412 ctccccaatgtccaaagaggtttgcagaatttcacttggagtcaggctcggggcctgaat 7495353
Query: 1311 tctcatcaccagaaatttggcaatggtat 1339
|||||||| ||||| |||||||| |||||
Sbjct: 7495352 tctcatcagcagaagtttggcaacggtat 7495324
Score = 89.7 bits (45), Expect = 4e-14
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 762 attgaccaggtgactgacactgagttattcttcctagcatctatgtactttgcatttcca 821
||||| |||||||| ||||| ||| | || || |||||||||||||||||||||||||||
Sbjct: 7495895 attgatcaggtgacagacacagagatgttttttctagcatctatgtactttgcatttcca 7495836
Query: 822 cgacatgtaggtggccctgggcaagtgtttgcaacaggtgcacccctttggattcctaac 881
|| | || ||||||||||| ||||| |||||| |||| | ||||| |||||||| |||
Sbjct: 7495835 cgccgtgctggtggccctggtcaagtatttgcagcaggcgtgcccctgtggattcccaac 7495776
Query: 882 a 882
|
Sbjct: 7495775 a 7495775
Score = 85.7 bits (43), Expect = 7e-13
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 1959 ttccaagcttttgaagaggcagaagtcaaagtgggcgaatcaaagatcacatccaacaat 2018
||||||||||| ||||||||||||||| | | || || || ||||||||| ||||||
Sbjct: 7494647 ttccaagctttcgaagaggcagaagtccatgcaggggagtcgaagatcacaagcaacaac 7494588
Query: 2019 gggacagttgtgcattccttcgttatcaagtcccctggctctgaacagcaaacaagggag 2078
|| || | |||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 7494587 ggcacggccgtgcattctttcatcatcaagtgccctggcgccgaacagcaaacgagggag 7494528
Query: 2079 aaattgattgccgcgatgtctcg 2101
|| |||||||||| ||||||||
Sbjct: 7494527 aaggtgattgccgccatgtctcg 7494505
Score = 67.9 bits (34), Expect = 2e-07
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 534 tggaactacgccatcttctggcaactctcccgcaccagatccggtgaacttgtccttggc 593
|||||||| ||||| |||||||| || || ||||| | |||||||| |||||||||||
Sbjct: 7496111 tggaactatgccatattctggcagctgtcgcgcacaaagtccggtgaccttgtccttgga 7496052
Query: 594 tggggtgacgggtcttgccgtgaaccccatgataatgagatg 635
||||| || || ||||||||||| || |||||| |||||||
Sbjct: 7496051 tggggggatggctcttgccgtgagcctcatgatggtgagatg 7496010
Score = 58.0 bits (29), Expect = 1e-04
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 921 ggattccttgcaagtgcagcaggatttaggactattgtgctactgccattcgaagctggt 980
|||| |||||||| ||| ||||||||||| |||||||||||| | ||||| || | |||
Sbjct: 7495736 ggataccttgcaaatgctgcaggatttagaactattgtgctagttccatttgagaccggt 7495677
Query: 981 gtacttgaa 989
|||||||||
Sbjct: 7495676 gtacttgaa 7495668
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2226 agaaagctcagattctgactt 2246
|||||||||||||||||||||
Sbjct: 7494342 agaaagctcagattctgactt 7494322
>dbj|AP001539.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0708G02
Length = 168976
Score = 204 bits (103), Expect = 1e-48
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 1608 agaaagaggggaagaaaaccagcaaatgggagagtagaggcactcaaccatgttgaggct 1667
||||||||||||||||| || ||||| ||||| | |||| |||| || |||||||||||
Sbjct: 43790 agaaagaggggaagaaagcctgcaaacgggagggaagagccactaaatcatgttgaggcc 43731
Query: 1668 gagcgccaaaggagggaaaaactcaaccagaggttctatgcactgagagctgttgttccc 1727
|||||||| |||||||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct: 43730 gagcgccagaggagggagaagctcaaccagcgattctatgcactgagagccgttgtaccc 43671
Query: 1728 aatatctcaaaaatggacaaagcatcactcctgggagatgccataacgcacatcactgat 1787
||||| |||||||||||||| ||||| ||||| || || |||||||| ||||||||||
Sbjct: 43670 aatatatcaaaaatggacaaggcatccctccttggtgacgccataacatacatcactgac 43611
Query: 1788 ctccagaagaagctcaaagagatggag 1814
|| ||||||||||||||||||||||||
Sbjct: 43610 ctacagaagaagctcaaagagatggag 43584
Score = 105 bits (53), Expect = 7e-19
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 1251 ctccccaatgtccggaaaggtttgcagaacttcacatggagtcaggctcgaggcctgaat 1310
||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 44204 ctccccaatgtccaaagaggtttgcagaatttcacttggagtcaggctcggggcctgaat 44145
Query: 1311 tctcatcaccagaaatttggcaatggtat 1339
|||||||| ||||| |||||||| |||||
Sbjct: 44144 tctcatcagcagaagtttggcaacggtat 44116
Score = 89.7 bits (45), Expect = 4e-14
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 762 attgaccaggtgactgacactgagttattcttcctagcatctatgtactttgcatttcca 821
||||| |||||||| ||||| ||| | || || |||||||||||||||||||||||||||
Sbjct: 44687 attgatcaggtgacagacacagagatgttttttctagcatctatgtactttgcatttcca 44628
Query: 822 cgacatgtaggtggccctgggcaagtgtttgcaacaggtgcacccctttggattcctaac 881
|| | || ||||||||||| ||||| |||||| |||| | ||||| |||||||| |||
Sbjct: 44627 cgccgtgctggtggccctggtcaagtatttgcagcaggcgtgcccctgtggattcccaac 44568
Query: 882 a 882
|
Sbjct: 44567 a 44567
Score = 85.7 bits (43), Expect = 7e-13
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 1959 ttccaagcttttgaagaggcagaagtcaaagtgggcgaatcaaagatcacatccaacaat 2018
||||||||||| ||||||||||||||| | | || || || ||||||||| ||||||
Sbjct: 43439 ttccaagctttcgaagaggcagaagtccatgcaggggagtcgaagatcacaagcaacaac 43380
Query: 2019 gggacagttgtgcattccttcgttatcaagtcccctggctctgaacagcaaacaagggag 2078
|| || | |||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 43379 ggcacggccgtgcattctttcatcatcaagtgccctggcgccgaacagcaaacgagggag 43320
Query: 2079 aaattgattgccgcgatgtctcg 2101
|| |||||||||| ||||||||
Sbjct: 43319 aaggtgattgccgccatgtctcg 43297
Score = 67.9 bits (34), Expect = 2e-07
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 534 tggaactacgccatcttctggcaactctcccgcaccagatccggtgaacttgtccttggc 593
|||||||| ||||| |||||||| || || ||||| | |||||||| |||||||||||
Sbjct: 44903 tggaactatgccatattctggcagctgtcgcgcacaaagtccggtgaccttgtccttgga 44844
Query: 594 tggggtgacgggtcttgccgtgaaccccatgataatgagatg 635
||||| || || ||||||||||| || |||||| |||||||
Sbjct: 44843 tggggggatggctcttgccgtgagcctcatgatggtgagatg 44802
Score = 58.0 bits (29), Expect = 1e-04
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 921 ggattccttgcaagtgcagcaggatttaggactattgtgctactgccattcgaagctggt 980
|||| |||||||| ||| ||||||||||| |||||||||||| | ||||| || | |||
Sbjct: 44528 ggataccttgcaaatgctgcaggatttagaactattgtgctagttccatttgagaccggt 44469
Query: 981 gtacttgaa 989
|||||||||
Sbjct: 44468 gtacttgaa 44460
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2226 agaaagctcagattctgactt 2246
|||||||||||||||||||||
Sbjct: 43134 agaaagctcagattctgactt 43114
>dbj|AK121013.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023047M20, full
insert sequence
Length = 2356
Score = 204 bits (103), Expect = 1e-48
Identities = 181/207 (87%)
Strand = Plus / Plus
Query: 1608 agaaagaggggaagaaaaccagcaaatgggagagtagaggcactcaaccatgttgaggct 1667
||||||||||||||||| || ||||| ||||| | |||| |||| || |||||||||||
Sbjct: 1479 agaaagaggggaagaaagcctgcaaacgggagggaagagccactaaatcatgttgaggcc 1538
Query: 1668 gagcgccaaaggagggaaaaactcaaccagaggttctatgcactgagagctgttgttccc 1727
|||||||| |||||||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct: 1539 gagcgccagaggagggagaagctcaaccagcgattctatgcactgagagccgttgtaccc 1598
Query: 1728 aatatctcaaaaatggacaaagcatcactcctgggagatgccataacgcacatcactgat 1787
||||| |||||||||||||| ||||| ||||| || || |||||||| ||||||||||
Sbjct: 1599 aatatatcaaaaatggacaaggcatccctccttggtgacgccataacatacatcactgac 1658
Query: 1788 ctccagaagaagctcaaagagatggag 1814
|| ||||||||||||||||||||||||
Sbjct: 1659 ctacagaagaagctcaaagagatggag 1685
Score = 105 bits (53), Expect = 7e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 1251 ctccccaatgtccggaaaggtttgcagaacttcacatggagtcaggctcgaggcctgaat 1310
||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1065 ctccccaatgtccaaagaggtttgcagaatttcacttggagtcaggctcggggcctgaat 1124
Query: 1311 tctcatcaccagaaatttggcaatggtat 1339
|||||||| ||||| |||||||| |||||
Sbjct: 1125 tctcatcagcagaagtttggcaacggtat 1153
Score = 89.7 bits (45), Expect = 4e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 762 attgaccaggtgactgacactgagttattcttcctagcatctatgtactttgcatttcca 821
||||| |||||||| ||||| ||| | || || |||||||||||||||||||||||||||
Sbjct: 582 attgatcaggtgacagacacagagatgttttttctagcatctatgtactttgcatttcca 641
Query: 822 cgacatgtaggtggccctgggcaagtgtttgcaacaggtgcacccctttggattcctaac 881
|| | || ||||||||||| ||||| |||||| |||| | ||||| |||||||| |||
Sbjct: 642 cgccgtgctggtggccctggtcaagtatttgcagcaggcgtgcccctgtggattcccaac 701
Query: 882 a 882
|
Sbjct: 702 a 702
Score = 85.7 bits (43), Expect = 7e-13
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 1959 ttccaagcttttgaagaggcagaagtcaaagtgggcgaatcaaagatcacatccaacaat 2018
||||||||||| ||||||||||||||| | | || || || ||||||||| ||||||
Sbjct: 1830 ttccaagctttcgaagaggcagaagtccatgcaggggagtcgaagatcacaagcaacaac 1889
Query: 2019 gggacagttgtgcattccttcgttatcaagtcccctggctctgaacagcaaacaagggag 2078
|| || | |||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 1890 ggcacggccgtgcattctttcatcatcaagtgccctggcgccgaacagcaaacgagggag 1949
Query: 2079 aaattgattgccgcgatgtctcg 2101
|| |||||||||| ||||||||
Sbjct: 1950 aaggtgattgccgccatgtctcg 1972
Score = 67.9 bits (34), Expect = 2e-07
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 534 tggaactacgccatcttctggcaactctcccgcaccagatccggtgaacttgtccttggc 593
|||||||| ||||| |||||||| || || ||||| | |||||||| |||||||||||
Sbjct: 366 tggaactatgccatattctggcagctgtcgcgcacaaagtccggtgaccttgtccttgga 425
Query: 594 tggggtgacgggtcttgccgtgaaccccatgataatgagatg 635
||||| || || ||||||||||| || |||||| |||||||
Sbjct: 426 tggggggatggctcttgccgtgagcctcatgatggtgagatg 467
Score = 58.0 bits (29), Expect = 1e-04
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 921 ggattccttgcaagtgcagcaggatttaggactattgtgctactgccattcgaagctggt 980
|||| |||||||| ||| ||||||||||| |||||||||||| | ||||| || | |||
Sbjct: 741 ggataccttgcaaatgctgcaggatttagaactattgtgctagttccatttgagaccggt 800
Query: 981 gtacttgaa 989
|||||||||
Sbjct: 801 gtacttgaa 809
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2226 agaaagctcagattctgactt 2246
|||||||||||||||||||||
Sbjct: 2135 agaaagctcagattctgactt 2155
>dbj|AK064943.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013000P13, full
insert sequence
Length = 2529
Score = 204 bits (103), Expect = 1e-48
Identities = 181/207 (87%)
Strand = Plus / Plus
Query: 1608 agaaagaggggaagaaaaccagcaaatgggagagtagaggcactcaaccatgttgaggct 1667
||||||||||||||||| || ||||| ||||| | |||| |||| || |||||||||||
Sbjct: 1652 agaaagaggggaagaaagcctgcaaacgggagggaagagccactaaatcatgttgaggcc 1711
Query: 1668 gagcgccaaaggagggaaaaactcaaccagaggttctatgcactgagagctgttgttccc 1727
|||||||| |||||||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct: 1712 gagcgccagaggagggagaagctcaaccagcgattctatgcactgagagccgttgtaccc 1771
Query: 1728 aatatctcaaaaatggacaaagcatcactcctgggagatgccataacgcacatcactgat 1787
||||| |||||||||||||| ||||| ||||| || || |||||||| ||||||||||
Sbjct: 1772 aatatatcaaaaatggacaaggcatccctccttggtgacgccataacatacatcactgac 1831
Query: 1788 ctccagaagaagctcaaagagatggag 1814
|| ||||||||||||||||||||||||
Sbjct: 1832 ctacagaagaagctcaaagagatggag 1858
Score = 105 bits (53), Expect = 7e-19
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 1251 ctccccaatgtccggaaaggtttgcagaacttcacatggagtcaggctcgaggcctgaat 1310
||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1238 ctccccaatgtccaaagaggtttgcagaatttcacttggagtcaggctcggggcctgaat 1297
Query: 1311 tctcatcaccagaaatttggcaatggtat 1339
|||||||| ||||| |||||||| |||||
Sbjct: 1298 tctcatcagcagaagtttggcaacggtat 1326
Score = 89.7 bits (45), Expect = 4e-14
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 762 attgaccaggtgactgacactgagttattcttcctagcatctatgtactttgcatttcca 821
||||| |||||||| ||||| ||| | || || |||||||||||||||||||||||||||
Sbjct: 755 attgatcaggtgacagacacagagatgttttttctagcatctatgtactttgcatttcca 814
Query: 822 cgacatgtaggtggccctgggcaagtgtttgcaacaggtgcacccctttggattcctaac 881
|| | || ||||||||||| ||||| |||||| |||| | ||||| |||||||| |||
Sbjct: 815 cgccgtgctggtggccctggtcaagtatttgcagcaggcgtgcccctgtggattcccaac 874
Query: 882 a 882
|
Sbjct: 875 a 875
Score = 85.7 bits (43), Expect = 7e-13
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 1959 ttccaagcttttgaagaggcagaagtcaaagtgggcgaatcaaagatcacatccaacaat 2018
||||||||||| ||||||||||||||| | | || || || ||||||||| ||||||
Sbjct: 2003 ttccaagctttcgaagaggcagaagtccatgcaggggagtcgaagatcacaagcaacaac 2062
Query: 2019 gggacagttgtgcattccttcgttatcaagtcccctggctctgaacagcaaacaagggag 2078
|| || | |||||||| ||| | ||||||| ||||||| | ||||||||||| ||||||
Sbjct: 2063 ggcacggccgtgcattctttcatcatcaagtgccctggcgccgaacagcaaacgagggag 2122
Query: 2079 aaattgattgccgcgatgtctcg 2101
|| |||||||||| ||||||||
Sbjct: 2123 aaggtgattgccgccatgtctcg 2145
Score = 67.9 bits (34), Expect = 2e-07
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 534 tggaactacgccatcttctggcaactctcccgcaccagatccggtgaacttgtccttggc 593
|||||||| ||||| |||||||| || || ||||| | |||||||| |||||||||||
Sbjct: 539 tggaactatgccatattctggcagctgtcgcgcacaaagtccggtgaccttgtccttgga 598
Query: 594 tggggtgacgggtcttgccgtgaaccccatgataatgagatg 635
||||| || || ||||||||||| || |||||| |||||||
Sbjct: 599 tggggggatggctcttgccgtgagcctcatgatggtgagatg 640
Score = 58.0 bits (29), Expect = 1e-04
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 921 ggattccttgcaagtgcagcaggatttaggactattgtgctactgccattcgaagctggt 980
|||| |||||||| ||| ||||||||||| |||||||||||| | ||||| || | |||
Sbjct: 914 ggataccttgcaaatgctgcaggatttagaactattgtgctagttccatttgagaccggt 973
Query: 981 gtacttgaa 989
|||||||||
Sbjct: 974 gtacttgaa 982
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2226 agaaagctcagattctgactt 2246
|||||||||||||||||||||
Sbjct: 2308 agaaagctcagattctgactt 2328
>ref|NM_203913.1 | Xenopus tropicalis spermatogenesis associated, serine-rich 2
(spats2), mRNA
gb|BC063897.1| Xenopus tropicalis spermatogenesis associated, serine-rich 2, mRNA
(cDNA clone MGC:75583 IMAGE:5379171), complete cds
Length = 3619
Score = 42.1 bits (21), Expect = 8.8
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1705 atgcactgagagctgttgttcccaa 1729
||||| |||||||||||||||||||
Sbjct: 348 atgcagtgagagctgttgttcccaa 372
>emb|AL732588.6 | Mouse DNA sequence from clone RP24-159M19 on chromosome 2, complete
sequence
Length = 91977
Score = 42.1 bits (21), Expect = 8.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 385 tttgtgcttctgtgctgggct 405
|||||||||||||||||||||
Sbjct: 22649 tttgtgcttctgtgctgggct 22669
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 409,573,222
Number of extensions: 22042811
Number of successful extensions: 111528
Number of sequences better than 10.0: 81
Number of HSP's gapped: 111521
Number of HSP's successfully gapped: 126
Length of query: 2309
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2286
Effective length of database: 18,503,978,556
Effective search space: 42300094979016
Effective search space used: 42300094979016
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)