Clone Information

BLAST Search Result

Clone Name	FLbaf144n20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK119727:Os05g0344200	146	2e-35
2	AK104716:Os05g0344200	146	2e-35
3	AK098850:Os05g0344200	146	2e-35
4	AK060058:Os05g0344200	146	2e-35
5	AK107202:Os07g0661400	46	3e-05
6	AK105973:Os07g0661400	46	3e-05
7	AK102682:Os07g0661400	46	3e-05
8	AK068814:Os07g0661400	46	3e-05
9	AY656247:Os03g0353400	38	0.010
10	AK068753:Os03g0353400	38	0.010
11	AK062176:Os03g0353400	38	0.010
12	AB110172:Os03g0353400	38	0.010
13	AK073562:Os02g0741800	29	0.085
14	AK062714:Os08g0390700	34	0.15
15	Os08g0392100:Os08g0392100	32	0.44
16	Os08g0391700:Os08g0391700	32	0.57
17	AK073563:Os08g0420600	26	1.3
18	Os02g0237300:Os02g0237300	30	2.2
19	Os03g0800200:Os03g0800200	30	2.8
20	AK119331:Os11g0605900	29	4.8
21	Os05g0188700:Os05g0188700	28	6.3
22	AK119907:Os01g0738900	28	6.3
23	AK071234:Os03g0823800	24	7.7
24	Os05g0497500:Os05g0497500	28	8.2
25	AK110142:	28	8.2
26	AK071477:	28	8.2
27	AK105801:Os01g0830500	28	8.2
28	AK066895:Os08g0490300	28	8.2
29	AK061475:Os01g0830500	28	8.2

>AK119727:Os05g0344200 |
          Length = 173
 Score =  146 bits (368), Expect = 2e-35
 Identities = 79/176 (44%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
 Frame = +2

Query: 128 MEVVTGSNGGRLNPWAEPFVPGSW------CRXXXXXXXXXXXXXDFSPEWWRLVASSPS 289
           MEV  G  GG+LNPWAEPFVP  W      C              DFSPEWWRLV SSP+
Sbjct: 1   MEVARG--GGKLNPWAEPFVPAGWSATYWRCGGVAAVEPAVAEVEDFSPEWWRLVGSSPA 58

Query: 290 FRDSWLRDYGDMGLLD---------------ADECXXXXXXXXXXXXXXRNAEGEGRKEE 424
           FRD WLRDY  +GLLD                D+               +  +G G    
Sbjct: 59  FRDRWLRDYSALGLLDDNDNGDGYDLEGFLLPDDLFSSTPHLVGEPADEKEGKGFGGAGG 118

Query: 425 AAVKKSGGEVAPWGIEKWWRAHVASPPEVPKYAEKAPAKVLGGGGRFSPRTIQQPR 592
             VK    EV  WGI+KWWRAH +SPPEVP+YA+KAP +V     R +PR IQQPR
Sbjct: 119 KKVKGGSAEVVAWGIDKWWRAH-SSPPEVPRYADKAPRRVAAAAARVNPRPIQQPR 173

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>AK104716:Os05g0344200 |
          Length = 173

 Score =  146 bits (368), Expect = 2e-35
 Identities = 79/176 (44%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
 Frame = +2

Query: 128 MEVVTGSNGGRLNPWAEPFVPGSW------CRXXXXXXXXXXXXXDFSPEWWRLVASSPS 289
           MEV  G  GG+LNPWAEPFVP  W      C              DFSPEWWRLV SSP+
Sbjct: 1   MEVARG--GGKLNPWAEPFVPAGWSATYWRCGGVAAVEPAVAEVEDFSPEWWRLVGSSPA 58

Query: 290 FRDSWLRDYGDMGLLD---------------ADECXXXXXXXXXXXXXXRNAEGEGRKEE 424
           FRD WLRDY  +GLLD                D+               +  +G G    
Sbjct: 59  FRDRWLRDYSALGLLDDNDNGDGYDLEGFLLPDDLFSSTPHLVGEPADEKEGKGFGGAGG 118

Query: 425 AAVKKSGGEVAPWGIEKWWRAHVASPPEVPKYAEKAPAKVLGGGGRFSPRTIQQPR 592
             VK    EV  WGI+KWWRAH +SPPEVP+YA+KAP +V     R +PR IQQPR
Sbjct: 119 KKVKGGSAEVVAWGIDKWWRAH-SSPPEVPRYADKAPRRVAAAAARVNPRPIQQPR 173

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>AK098850:Os05g0344200 |
          Length = 173

 Score =  146 bits (368), Expect = 2e-35
 Identities = 79/176 (44%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
 Frame = +2

Query: 128 MEVVTGSNGGRLNPWAEPFVPGSW------CRXXXXXXXXXXXXXDFSPEWWRLVASSPS 289
           MEV  G  GG+LNPWAEPFVP  W      C              DFSPEWWRLV SSP+
Sbjct: 1   MEVARG--GGKLNPWAEPFVPAGWSATYWRCGGVAAVEPAVAEVEDFSPEWWRLVGSSPA 58

Query: 290 FRDSWLRDYGDMGLLD---------------ADECXXXXXXXXXXXXXXRNAEGEGRKEE 424
           FRD WLRDY  +GLLD                D+               +  +G G    
Sbjct: 59  FRDRWLRDYSALGLLDDNDNGDGYDLEGFLLPDDLFSSTPHLVGEPADEKEGKGFGGAGG 118

Query: 425 AAVKKSGGEVAPWGIEKWWRAHVASPPEVPKYAEKAPAKVLGGGGRFSPRTIQQPR 592
             VK    EV  WGI+KWWRAH +SPPEVP+YA+KAP +V     R +PR IQQPR
Sbjct: 119 KKVKGGSAEVVAWGIDKWWRAH-SSPPEVPRYADKAPRRVAAAAARVNPRPIQQPR 173

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>AK060058:Os05g0344200 |
          Length = 173

 Score =  146 bits (368), Expect = 2e-35
 Identities = 79/176 (44%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
 Frame = +2

Query: 128 MEVVTGSNGGRLNPWAEPFVPGSW------CRXXXXXXXXXXXXXDFSPEWWRLVASSPS 289
           MEV  G  GG+LNPWAEPFVP  W      C              DFSPEWWRLV SSP+
Sbjct: 1   MEVARG--GGKLNPWAEPFVPAGWSATYWRCGGVAAVEPAVAEVEDFSPEWWRLVGSSPA 58

Query: 290 FRDSWLRDYGDMGLLD---------------ADECXXXXXXXXXXXXXXRNAEGEGRKEE 424
           FRD WLRDY  +GLLD                D+               +  +G G    
Sbjct: 59  FRDRWLRDYSALGLLDDNDNGDGYDLEGFLLPDDLFSSTPHLVGEPADEKEGKGFGGAGG 118

Query: 425 AAVKKSGGEVAPWGIEKWWRAHVASPPEVPKYAEKAPAKVLGGGGRFSPRTIQQPR 592
             VK    EV  WGI+KWWRAH +SPPEVP+YA+KAP +V     R +PR IQQPR
Sbjct: 119 KKVKGGSAEVVAWGIDKWWRAH-SSPPEVPRYADKAPRRVAAAAARVNPRPIQQPR 173

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>AK107202:Os07g0661400 |
          Length = 154

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A PF+P ++ R             DFSPEWW LV ++  FRD W R +
Sbjct: 9   LNPNAAPFIPAAFRRVE-----------DFSPEWWELVKTTAWFRDHWFRQH 49

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>AK105973:Os07g0661400 |
          Length = 154

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A PF+P ++ R             DFSPEWW LV ++  FRD W R +
Sbjct: 9   LNPNAAPFIPAAFRRVE-----------DFSPEWWELVKTTAWFRDHWFRQH 49

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>AK102682:Os07g0661400 |
          Length = 154

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A PF+P ++ R             DFSPEWW LV ++  FRD W R +
Sbjct: 9   LNPNAAPFIPAAFRRVE-----------DFSPEWWELVKTTAWFRDHWFRQH 49

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>AK068814:Os07g0661400 |
          Length = 154

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A PF+P ++ R             DFSPEWW LV ++  FRD W R +
Sbjct: 9   LNPNAAPFIPAAFRRVE-----------DFSPEWWELVKTTAWFRDHWFRQH 49

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>AY656247:Os03g0353400 |
          Length = 160

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A  F+P ++ +             DFSP+WW LV ++  FRD W  ++
Sbjct: 9   LNPDAPLFIPAAFRQVE-----------DFSPQWWDLVKTTAWFRDHWFHEH 49

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>AK068753:Os03g0353400 |
          Length = 112

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A  F+P ++ +             DFSP+WW LV ++  FRD W  ++
Sbjct: 9   LNPDAPLFIPAAFRQVE-----------DFSPQWWDLVKTTAWFRDHWFHEH 49

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>AK062176:Os03g0353400 |
          Length = 160

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A  F+P ++ +             DFSP+WW LV ++  FRD W  ++
Sbjct: 9   LNPDAPLFIPAAFRQVE-----------DFSPQWWDLVKTTAWFRDHWFHEH 49

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>AB110172:Os03g0353400 |
          Length = 160

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 161 LNPWAEPFVPGSWCRXXXXXXXXXXXXXDFSPEWWRLVASSPSFRDSWLRDY 316
           LNP A  F+P ++ +             DFSP+WW LV ++  FRD W  ++
Sbjct: 9   LNPDAPLFIPAAFRQVE-----------DFSPQWWDLVKTTAWFRDHWFHEH 49

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>AK073562:Os02g0741800 |
          Length = 538

 Score = 29.3 bits (64), Expect(2) = 0.085
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 214 GGGAAPAPRHEGLRP 170
           GGGAAPAP+H+ L P
Sbjct: 8   GGGAAPAPKHDELTP 22



 Score = 24.3 bits (51), Expect(2) = 0.085
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 149 CCRSPPPWLPVVLYRFLLFL 90
           C  SPPPW   +L  F  +L
Sbjct: 35  CITSPPPWPEAILLGFQHYL 54

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>AK062714:Os08g0390700 |
          Length = 103

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 543 TLAGAFSAYFGTSGGEATCARHHFSIPQGATSPP 442
           T AG F A+F   G +   A  HF IP  A+SPP
Sbjct: 67  TTAGEFLAHFNGKGLDGRSALDHFRIPAAASSPP 100

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>Os08g0392100:Os08g0392100 |
          Length = 376

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 543 TLAGAFSAYFGTSGGEATCARHHFSIPQGATSPP 442
           T AG F A++   G +   A  HF IP  A SPP
Sbjct: 339 TTAGEFLAHYNGKGLDGRSALDHFRIPAAAASPP 372

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>Os08g0391700:Os08g0391700 |
          Length = 418

 Score = 32.0 bits (71), Expect = 0.57
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 543 TLAGAFSAYFGTSGGEATCARHHFSIPQGATSPP 442
           T AG F A++   G +   A  HF +P  A+SPP
Sbjct: 382 TTAGEFLAHYNGKGLDGRSALDHFRLPAAASSPP 415

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>AK073563:Os08g0420600 |
          Length = 533

 Score = 26.2 bits (56), Expect(2) = 1.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 214 GGGAAPAPRHEGLRP 170
           GGGAAP P+ E L+P
Sbjct: 3   GGGAAPPPKQEELQP 17



 Score = 23.1 bits (48), Expect(2) = 1.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 149 CCRSPPPWLPVVLYRF 102
           C  SPPPW   V+  F
Sbjct: 30  CITSPPPWPEAVILGF 45

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>Os02g0237300:Os02g0237300 |
          Length = 1377

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 286 RRGGDEAPPLGGEVLDLRRRRSLHGGGAAPAPRHEGLRPR 167
           RR G   PP        RR  +   GG+AP+P   G+RPR
Sbjct: 33  RRHGSPTPPRREPS---RRENAARSGGSAPSPLQGGVRPR 69

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>Os03g0800200:Os03g0800200 |
          Length = 1059

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
 Frame = -3

Query: 289 GRRGGDEAPPLGGEVLDLRRRRSLHGGGAAPAPR--------HEGLRPRVQPP 155
           G RGG++ PP  G   D+  R    GGG AP  R          G+ PR  PP
Sbjct: 9   GGRGGEQRPPYSGRG-DVPGRGGGGGGGGAPPYRPASGFVWPPPGMTPRPGPP 60

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>AK119331:Os11g0605900 |
          Length = 260

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 226 RSLHGGGAAPAPRHEGLRPRVQPP 155
           R L G GA    RH GL  R+QPP
Sbjct: 67  RGLDGAGARRRLRHRGLHRRLQPP 90

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>Os05g0188700:Os05g0188700 |
          Length = 440

 Score = 28.5 bits (62), Expect = 6.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -3

Query: 262 PLGGEVLDLRRRRSLHGGGAAPAPRHEGLRPRVQ-----PPAVA 146
           P  G  +  ++   LH GGA     H G RP +Q     PPA A
Sbjct: 261 PRPGGAVPQQQAHRLHSGGARVLAHHRGARPELQLALRPPPAHA 304

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>AK119907:Os01g0738900 |
          Length = 163

 Score = 28.5 bits (62), Expect = 6.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 176 PPTGSASRRCCRSPPPWLP 120
           PP G+ SRR C S P W P
Sbjct: 134 PPRGTMSRRSCGSCPAWRP 152

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>AK071234:Os03g0823800 |
          Length = 529

 Score = 24.3 bits (51), Expect(2) = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 149 CCRSPPPWLPVVLYRFLLFL 90
           C  SPPPW   +L  F  +L
Sbjct: 26  CLTSPPPWPEAILLGFQHYL 45



 Score = 22.3 bits (46), Expect(2) = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = -3

Query: 205 AAPAPRHEGLRPRV---QPPAVA 146
           AAPAP+ E L+P     Q PA++
Sbjct: 2   AAPAPKQEELQPHAVKDQLPAIS 24

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>Os05g0497500:Os05g0497500 |
          Length = 646

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
 Frame = +2

Query: 32  IPLHQSTPQQHSSELETERARRGGTDTALQATMEVVTGS-----NGGRLNP-----W--A 175
           +PLHQ TP + +S  +     +GGT    ++T+ V + S     + G+L+P     W  +
Sbjct: 388 LPLHQLTPDKDASHHKGADFDKGGTS---RSTLHVSSSSQPVVASAGKLSPIKDEVWITS 444

Query: 176 EPFVP 190
            PFVP
Sbjct: 445 VPFVP 449

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>AK110142: |
          Length = 966

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 214 GGGAAPAPRHEGLRPRVQPPAV 149
           GG +APA ++E L P V+ PAV
Sbjct: 334 GGSSAPATKNEILAPEVEQPAV 355

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>AK071477: |
          Length = 289

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 176 PPTGSASRRCCRSPPPWL 123
           PP GS      RSPPPWL
Sbjct: 9   PPPGSLPYPLARSPPPWL 26

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>AK105801:Os01g0830500 |
          Length = 394

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 17  FPSHPIPLHQSTPQQHSSELETERARRGGTDTALQATME 133
           FP  P P    TP  H   L +  A  GGTD AL   ++
Sbjct: 26  FPGPPPP----TPSNHHHALPSSGAAGGGTDAALSTILQ 60

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>AK066895:Os08g0490300 |
          Length = 603

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 211 GGAAPAPRHEGLRPRVQPPAVAA 143
           G AAPAP H   +P + PPA  A
Sbjct: 114 GVAAPAPNHPPSQPNLPPPAAPA 136

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>AK061475:Os01g0830500 |
          Length = 394

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 17  FPSHPIPLHQSTPQQHSSELETERARRGGTDTALQATME 133
           FP  P P    TP  H   L +  A  GGTD AL   ++
Sbjct: 26  FPGPPPP----TPSNHHHALPSSGAAGGGTDAALSTILQ 60


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 19,726,391
Number of extensions: 447984
Number of successful extensions: 2405
Number of sequences better than 10.0: 29
Number of HSP's gapped: 2385
Number of HSP's successfully gapped: 32
Length of query: 288
Length of database: 15,399,855
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,395,755
Effective search space: 2142401940
Effective search space used: 2142401940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result