ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf144n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q18GH1:RL15_HALWD 50S ribosomal protein L15P - Haloquadratum wal... 32 4.3
2P05971:RL15_HALSA 50S ribosomal protein L15P - Halobacterium sal... 32 4.3
3Q0WPE9:NAT7_ARATH Nucleobase-ascorbate transporter 7 - Arabidops... 25 6.1
4Q9BXJ3:C1QT4_HUMAN Complement C1q tumor necrosis factor-related ... 30 9.5
5P34308:CAN_CAEEL Calpain clp-1 - Caenorhabditis elegans 30 9.5

>Q18GH1:RL15_HALWD 50S ribosomal protein L15P - Haloquadratum walsbyi (strain DSM|
           16790)
          Length = 164
 Score = 31.6 bits (70), Expect = 4.3
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  KKRRNRYSTTGNHGGGDRQQRREAEPVGGALRAG 192
           KKRR R S T  HGGG  + RR A   GG  RAG
Sbjct: 4   KKRRQRGSRT--HGGGTHKNRRGAGHRGGRGRAG 35



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>P05971:RL15_HALSA 50S ribosomal protein L15P - Halobacterium salinarium|
           (Halobacterium halobium)
          Length = 153

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  KKRRNRYSTTGNHGGGDRQQRREAEPVGGALRAG 192
           KKRR R S T  HGGG  + RR A   GG  RAG
Sbjct: 4   KKRRQRGSRT--HGGGTHKNRRGAGNRGGRGRAG 35



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>Q0WPE9:NAT7_ARATH Nucleobase-ascorbate transporter 7 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 538

 Score = 25.4 bits (54), Expect(2) = 6.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 214 GGGAAPAPRHEGLRP 170
           GGG AP  +H+GL P
Sbjct: 8   GGGVAPPLKHDGLEP 22



 Score = 24.3 bits (51), Expect(2) = 6.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 149 CCRSPPPWLPVVLYRFLLFL 90
           C  SPPPW   +L  F  +L
Sbjct: 35  CITSPPPWPEAILLGFQHYL 54



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>Q9BXJ3:C1QT4_HUMAN Complement C1q tumor necrosis factor-related protein 4 precursor -|
           Homo sapiens (Human)
          Length = 329

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 277 GDEAPPLGGEVLDLRRRRSLHGGGAAPAPRHEGL 176
           G  APP         R RSL G  A P PRH+ L
Sbjct: 168 GPPAPPEPRSAFSAARTRSLVGSDAGPGPRHQPL 201



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>P34308:CAN_CAEEL Calpain clp-1 - Caenorhabditis elegans|
          Length = 780

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 79  NREGKKRRNRYSTTGNHGGGDRQQ 150
           NR+GKK ++ Y   GN+GGG   Q
Sbjct: 111 NRKGKKEQDNYGGGGNYGGGGGNQ 134


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 110,148,015
Number of extensions: 2114154
Number of successful extensions: 7951
Number of sequences better than 10.0: 5
Number of HSP's gapped: 7944
Number of HSP's successfully gapped: 6
Length of query: 288
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 176
Effective length of database: 69,965,399
Effective search space: 12313910224
Effective search space used: 12313910224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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