ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf142h02 |
|---|---|
| Clone Library Name | barley_pub |
>P02889:PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8 -| Dictyostelium discoideum (Slime mold) Length = 263 Score = 187 bits (475), Expect = 7e-47 Identities = 105/253 (41%), Positives = 159/253 (62%), Gaps = 1/253 (0%) Frame = +2 Query: 191 KAACKRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVE-ELKLAREIYEHAVLLSVK 367 K SD +L QLK+ T P + V+ +L LAREI E L S+K Sbjct: 15 KLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIK 74 Query: 368 MEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPA 547 ++D D+FER F QLK YY D I+ PS++EY I+GLNL+RLL +++ +EFH+E+EL+ Sbjct: 75 IKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEF 134 Query: 548 KALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKG 727 L+N+ IK + +E+S EG+YN+++ +R P E Y F+D+LA +++++IA CSEK Sbjct: 135 NNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKS 194 Query: 728 YDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQPCKEIPAAPVIN 907 + LS+ DA+++ +F+ + + QQYI E + W V+ G V+ Q EIP+ +I+ Sbjct: 195 FKTLSLKDAEKVLLFNDNNQFQQYIKERN--WKVQ-GDVI-QFGNNDNQTVEIPSLQLIH 250 Query: 908 QTLGYARELERIV 946 QTL YA+ELERIV Sbjct: 251 QTLHYAKELERIV 263
>Q5RE15:PSMD8_PONPY 26S proteasome non-ATPase regulatory subunit 8 - Pongo pygmaeus| (Orangutan) Length = 257 Score = 165 bits (418), Expect = 3e-40 Identities = 101/261 (38%), Positives = 151/261 (57%), Gaps = 4/261 (1%) Frame = +2 Query: 176 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 349 ++E+ K R +L L +LK++L + LP T ++L LAR+I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58 Query: 350 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 529 S+ +D +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118 Query: 530 LELLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEI 706 LE LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEI 178 Query: 707 AGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQP-CKE 883 AGC EK Y+ + ++A ++ F++ K++ Y + W + + +++ +P Sbjct: 179 AGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDTT 236 Query: 884 IPAAPVINQTLGYARELERIV 946 IP+ + Q + YAR+LE IV Sbjct: 237 IPSTELAKQVIEYARQLEMIV 257
>Q9CX56:PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 - Mus musculus| (Mouse) Length = 257 Score = 165 bits (418), Expect = 3e-40 Identities = 100/250 (40%), Positives = 145/250 (58%), Gaps = 2/250 (0%) Frame = +2 Query: 203 KRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQD 382 K +L L +LK++L + LP T ++L LAR+I E S+ +D Sbjct: 12 KNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIP 69 Query: 383 AFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPAKALE- 559 +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTELE LPAK ++ Sbjct: 70 SFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQT 129 Query: 560 NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYL 739 N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEIAGC EK Y+ + Sbjct: 130 NVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKI 189 Query: 740 SISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQP-CKEIPAAPVINQTL 916 ++A ++ FS+ K++ Y + W + + +++ +P IP + Q + Sbjct: 190 LFAEATRILFFSTPKKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDSTIPFTELAKQVI 247 Query: 917 GYARELERIV 946 YAR+LE IV Sbjct: 248 EYARQLEMIV 257
>P48556:PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 - Homo sapiens| (Human) Length = 257 Score = 165 bits (418), Expect = 3e-40 Identities = 101/261 (38%), Positives = 151/261 (57%), Gaps = 4/261 (1%) Frame = +2 Query: 176 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 349 ++E+ K R +L L +LK++L + LP T ++L LAR+I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58 Query: 350 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 529 S+ +D +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118 Query: 530 LELLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEI 706 LE LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEI 178 Query: 707 AGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQP-CKE 883 AGC EK Y+ + ++A ++ F++ K++ Y + W + + +++ +P Sbjct: 179 AGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDTT 236 Query: 884 IPAAPVINQTLGYARELERIV 946 IP+ + Q + YAR+LE IV Sbjct: 237 IPSTELAKQVIEYARQLEMIV 257
>Q3SYT7:PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 - Bos taurus| (Bovine) Length = 257 Score = 164 bits (416), Expect = 5e-40 Identities = 101/261 (38%), Positives = 151/261 (57%), Gaps = 4/261 (1%) Frame = +2 Query: 176 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 349 ++E+ K R +L L +LK++L + LP T ++L LAR+I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIG 58 Query: 350 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 529 S+ +D +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118 Query: 530 LELLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEI 706 LE LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEI 178 Query: 707 AGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQP-CKE 883 AGC EK Y+ + ++A ++ F++ K++ Y + W + + +++ +P Sbjct: 179 AGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGINNYYSFASQQQKPEDTT 236 Query: 884 IPAAPVINQTLGYARELERIV 946 IP+ + Q + YAR+LE IV Sbjct: 237 IPSTELAKQVIEYARQLEMIV 257
>P50524:RPN12_SCHPO 26S proteasome regulatory subunit rpn12 - Schizosaccharomyces pombe| (Fission yeast) Length = 270 Score = 132 bits (332), Expect = 3e-30 Identities = 95/266 (35%), Positives = 141/266 (53%), Gaps = 19/266 (7%) Frame = +2 Query: 206 RSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQDA 385 R D +A L +LKV L K LF T + E+ AR ++E+ VL+S++ D ++ Sbjct: 15 RKDWNACKKELLKLKVELAK----QNLFVPTSDK-EKASFARNVFEYGVLVSIQTCDIES 69 Query: 386 FERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPAKAL--E 559 F R Q+ P+Y D+ L PSS + GLNLL LL +NRIAEFHT LE +P K+L Sbjct: 70 FARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFER 126 Query: 560 NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYL 739 + ++ + LEQ+ MEGA+++V S ++ + YFM ++ VR+EIA C+EK Y + Sbjct: 127 DPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEI 186 Query: 740 SISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAK-----------------ES 868 +S+A + + KE ++ +AEE WD++DG + F K E Sbjct: 187 PLSNATSLLYLENTKETEK-LAEER-GWDIRDGVIYFPKEANALETEDGMLIDEEDELEL 244 Query: 869 QPCKEIPAAPVINQTLGYARELERIV 946 P I Q L Y ELE+IV Sbjct: 245 PPTASKHTISSIRQLLSYTSELEQIV 270
>Q23449:PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 - Caenorhabditis| elegans Length = 250 Score = 113 bits (282), Expect = 2e-24 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 2/247 (0%) Frame = +2 Query: 212 DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQDAFE 391 DL A L++L +L+ L N + ++++YE +VLL++ D + F+ Sbjct: 18 DLVAVEKALNELTKVLSASSDL--------NDKQSALASKDLYEISVLLAILKHDFETFD 69 Query: 392 RDFCQLKPYYMDTCGILPPSSMEYPIM-GLNLLRLLVQNRIAEFHTELELLPAKA-LENA 565 Q+ YY + P +S +M GL+L+ LL NR+++FH LE +P K NA Sbjct: 70 DYINQMHTYYT----MAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNA 125 Query: 566 CIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSI 745 I V +EQS MEGAYN+V+ + P Y F+ ++ T+R EIA EK + L+ Sbjct: 126 YISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTA 185 Query: 746 SDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQPCKEIPAAPVINQTLGYA 925 DA M +F +D++++++ E +W + +F+ + + V QTL YA Sbjct: 186 KDATVMLLFDNDEQMKKFGQER--KWHLDGERYVFEIEVAQEKPVNLDTVRVATQTLFYA 243 Query: 926 RELERIV 946 ++LE+IV Sbjct: 244 KQLEQIV 250
>P32496:RPN12_YEAST 26S proteasome regulatory subunit RPN12 - Saccharomyces cerevisiae| (Baker's yeast) Length = 274 Score = 112 bits (279), Expect = 4e-24 Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 13/278 (4%) Frame = +2 Query: 152 PKLVEVTQLFERFKAACKRSDLDASATLLSQLKVLLTKFPSL-PPLFQQTPNAVEELKLA 328 P L E+T+ A + D A LL +K+ L K L P L Q + +L + Sbjct: 2 PSLAELTK---SLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMIT 58 Query: 329 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNR 508 + I E L S++ + D+FE F QLKPYY L S + ++ L LL LL QN Sbjct: 59 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNN 118 Query: 509 IAEFHTELELLP--AKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVY--FM 673 +FH+EL+ L K LE ++ + + ++L++ MEG+Y + Q+ + F Sbjct: 119 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFT 178 Query: 674 DLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLF- 850 D+L +RDEIA +E YD+L +S+ K + F+++KE +++ E + W + + V F Sbjct: 179 DILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVYFN 236 Query: 851 ----QKA--KESQPCKEIPAAPVINQTLGYARELERIV 946 +KA ++ +E +I + + YA +E IV Sbjct: 237 NQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274
>Q5REL7:TCO2_PONPY Transcobalamin-2 precursor - Pongo pygmaeus (Orangutan)| Length = 427 Score = 33.1 bits (74), Expect = 2.2 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 539 LPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAP---HETYV--YFMDLLAKTVRDE 703 +P L AC+K V L S +GA+ L Q P H+TY+ F D LA V E Sbjct: 258 MPGAELGTACLKARVALFASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLE 317 Query: 704 IA 709 A Sbjct: 318 PA 319
>P20062:TCO2_HUMAN Transcobalamin-2 precursor - Homo sapiens (Human)| Length = 427 Score = 33.1 bits (74), Expect = 2.2 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 539 LPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAP---HETYV--YFMDLLAKTVRDE 703 +P L AC+K V L S +GA+ L Q P H+TY+ F D LA V E Sbjct: 258 MPGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLE 317 Query: 704 IA 709 A Sbjct: 318 PA 319
>Q9R8E3:BLS_STRCL Carboxyethyl-arginine beta-lactam-synthase - Streptomyces| clavuligerus Length = 513 Score = 32.3 bits (72), Expect = 3.7 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +1 Query: 769 VQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGVAALQ 879 + L GTA HR TP + +R++PEGE VAA++ Sbjct: 195 IDLGSGTAVTHRTWTPGLS----RRILPEGEAVAAVR 227
>Q2K5P2:FTHS_RHIEC Formate--tetrahydrofolate ligase - Rhizobium etli (strain CFN 42 /| ATCC 51251) Length = 559 Score = 31.6 bits (70), Expect = 6.4 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 686 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQ 793 K VRD++ E+GY L + AK + FS+D L+ Sbjct: 468 KAVRDQLQSWEEQGYGKLPVCMAKTQYSFSTDPNLR 503
>Q8HY00:CD209_PONPY CD209 antigen - Pongo pygmaeus (Orangutan)| Length = 404 Score = 31.6 bits (70), Expect = 6.4 Identities = 64/269 (23%), Positives = 100/269 (37%), Gaps = 32/269 (11%) Frame = +2 Query: 155 KLVEVTQLFERFKAAC----KRSDLDASATLLSQLKVLLTKFPS---LPPLFQ---QTPN 304 KL E+ Q + KAA ++S L+QLK +++ P L ++Q Q Sbjct: 96 KLQEIYQELTQLKAAVSELPEKSKQQEIYQELTQLKAAVSELPEKSKLQEIYQELTQLKA 155 Query: 305 AVEEL---KLAREIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGI------LPPSSM 457 AV EL +EIY+ L + + + C+L+ Y + + LP S Sbjct: 156 AVSELPEKSKLQEIYQELTRLKAAVGELP----EKCKLQEIYQELTRLKAAVDELPEKSK 211 Query: 458 EYPI-MGLNLLRLLV-----QNRIAEFHTELELLPAKALENACIKHGVELEQSFMEGAYN 619 I L L+ V ++R+ E + EL L A A+E C H E +F +G Sbjct: 212 LQEIYQELTQLKAAVGELPEKSRLQEIYQELTQLKA-AVERLC--HPCPWEWTFFQGN-- 266 Query: 620 RVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSISDA-KQMFMFSSDKELQQ 796 YF+ + D I C E G + I A +Q F+ + Sbjct: 267 --------------CYFISNSQRNWHDSITACQEVGAQLVVIKSAEEQNFLQLQSSRSNR 312 Query: 797 YI------AEEHPEWDVKDGSVLFQKAKE 865 + + W DGS L K+ Sbjct: 313 FTWMGLSDLNQEGTWQWVDGSPLLPSFKQ 341
>Q10666:POP1_CAEEL Protein pop-1 - Caenorhabditis elegans| Length = 438 Score = 31.2 bits (69), Expect = 8.3 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Frame = +2 Query: 647 PHETYVYFMDLLAKTVRDEIAG-----------CSEKGYDYLSISDAKQMFMFSSDKELQ 793 P +V+FM K + +EI ++ +D AK M DKE Sbjct: 195 PLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKETH 254 Query: 794 QYIAEEHPEWDVKDGSVLFQKAKESQPCKEIPA 892 + E +PEW ++ + +K + + K IP+ Sbjct: 255 K---ERYPEWSARENYAVNKKKTKKRRDKSIPS 284
>Q1MDG4:FTHS_RHIL3 Formate--tetrahydrofolate ligase - Rhizobium leguminosarum bv.| viciae (strain 3841) Length = 559 Score = 31.2 bits (69), Expect = 8.3 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 686 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQ 793 K VRD++ E+GY L I AK + FS+D L+ Sbjct: 468 KAVRDQLQTWEEQGYGKLPICMAKTQYSFSTDPNLR 503
>Q96RY5:CRML_HUMAN Protein cramped-like - Homo sapiens (Human)| Length = 1266 Score = 31.2 bits (69), Expect = 8.3 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = +1 Query: 145 DGSEVGGGDAAVRTLQGGLQAQRSRRLRDPPLAAQGAPHQVPQPPSALPAD 297 +G GG DAA + + R D P A GAP Q P PP P D Sbjct: 29 EGEGAGGADAAEESSGTKRDEKTPRAGADGPPAPPGAP-QAPSPPQGSPQD 78 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 189,975,676 Number of extensions: 4170670 Number of successful extensions: 12530 Number of sequences better than 10.0: 16 Number of HSP's gapped: 12504 Number of HSP's successfully gapped: 16 Length of query: 380 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 265 Effective length of database: 69,142,514 Effective search space: 18322766210 Effective search space used: 18322766210 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
