ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf150e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY105784.1| Zea mays PCO113764 mRNA sequence 92 3e-15
2emb|CT828378.1| Oryza sativa (indica cultivar-group) cDNA clone:... 76 2e-10
3ref|NM_001052064.1| Oryza sativa (japonica cultivar-group) Os01g... 76 2e-10
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
5dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
6dbj|AK120145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
7dbj|AK061660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
8emb|AL590842.1| Yersinia pestis CO92 complete genome 42 2.1
9gb|AE017042.1| Yersinia pestis biovar Microtus str. 91001, compl... 42 2.1
10gb|DQ769000.1| Synthetic construct Yersinia pestis clone FLH0140... 42 2.1
11ref|XM_001114648.1| PREDICTED: Macaca mulatta similar to myb-lik... 42 2.1
12gb|CP000308.1| Yersinia pestis Antiqua, complete genome 42 2.1
13gb|CP000305.1| Yersinia pestis Nepal516, complete genome 42 2.1
14gb|AE009952.1| Yersinia pestis KIM, complete genome 42 2.1
15gb|AC099593.6| Mus musculus chromosome 10, clone RP23-447D24, co... 42 2.1
16emb|AL035411.28|HS592A1 Human DNA sequence from clone RP4-592A1 ... 42 2.1
17gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Can... 42 2.1
18emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 42 2.1
19emb|CR627323.1| Homo sapiens mRNA; cDNA DKFZp779J1554 (from clon... 42 2.1
20gb|U50300.1| Caenorhabditis elegans cosmid R03H4, complete sequence 42 2.1
21gb|DQ445623.1| Lycopersicon esculentum clone BAC LE_HBa0181K01 L... 40 8.3
22gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome... 40 8.3
23gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, com... 40 8.3
24ref|XM_693181.1| PREDICTED: Danio rerio similar to Glra4a protei... 40 8.3
25ref|NM_131782.1| Danio rerio glycine receptor, alpha 4a (glra4a)... 40 8.3
26gb|AC019231.7| Homo sapiens BAC clone RP11-573O16 from 2, comple... 40 8.3
27gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, comple... 40 8.3
28gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complet... 40 8.3
29emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 i... 40 8.3
30gb|BC090676.1| Danio rerio glycine receptor, alpha 4a, mRNA (cDN... 40 8.3
31gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Canc... 40 8.3
32emb|AJ330097.1|HSA330097 Homo sapiens genomic sequence surroundi... 40 8.3
33emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 i... 40 8.3
34emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 8.3

>gb|AY105784.1| Zea mays PCO113764 mRNA sequence
          Length = 588
 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                       
Query: 259 gcttcggacttcatcaagcgtaagcacatgtcttgggcactccagaagagcacaaccatg 318
           |||||||||||||||||||  ||||||| | |||||||||||||||||||||||||||||
Sbjct: 271 gcttcggacttcatcaagctgaagcacaaggcttgggcactccagaagagcacaaccatg 330

             
Query: 319 ta 320
           ||
Sbjct: 331 ta 332



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>emb|CT828378.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037D07, full
           insert sequence
          Length = 519

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303
           ||||| ||||| || ||||| |||||||||||||  ||||||| | |||||||||| |||
Sbjct: 204 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 263

                                         
Query: 304 aagagcacaaccatgtatccatcttcttaa 333
           |||||| ||| |||||||| | ||||||||
Sbjct: 264 aagagcgcaagcatgtatcaaccttcttaa 293



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>ref|NM_001052064.1| Oryza sativa (japonica cultivar-group) Os01g0971000 (Os01g0971000)
           mRNA, complete cds
          Length = 532

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303
           ||||| ||||| || ||||| |||||||||||||  ||||||| | |||||||||| |||
Sbjct: 209 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 268

                                         
Query: 304 aagagcacaaccatgtatccatcttcttaa 333
           |||||| ||| |||||||| | ||||||||
Sbjct: 269 aagagcgcaagcatgtatcaaccttcttaa 298



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                            
Query: 244      gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303
                ||||| ||||| || ||||| |||||||||||||  ||||||| | |||||||||| |||
Sbjct: 42831542 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 42831601

                                              
Query: 304      aagagcacaaccatgtatccatcttcttaa 333
                |||||| ||| |||||||| | ||||||||
Sbjct: 42831602 aagagcgcaagcatgtatcaaccttcttaa 42831631



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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518C01
          Length = 173555

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                         
Query: 244   gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303
             ||||| ||||| || ||||| |||||||||||||  ||||||| | |||||||||| |||
Sbjct: 25276 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 25335

                                           
Query: 304   aagagcacaaccatgtatccatcttcttaa 333
             |||||| ||| |||||||| | ||||||||
Sbjct: 25336 aagagcgcaagcatgtatcaaccttcttaa 25365



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>dbj|AK120145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028J10, full
           insert sequence
          Length = 533

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303
           ||||| ||||| || ||||| |||||||||||||  ||||||| | |||||||||| |||
Sbjct: 210 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 269

                                         
Query: 304 aagagcacaaccatgtatccatcttcttaa 333
           |||||| ||| |||||||| | ||||||||
Sbjct: 270 aagagcgcaagcatgtatcaaccttcttaa 299



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>dbj|AK061660.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E01, full
           insert sequence
          Length = 535

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303
           ||||| ||||| || ||||| |||||||||||||  ||||||| | |||||||||| |||
Sbjct: 212 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 271

                                         
Query: 304 aagagcacaaccatgtatccatcttcttaa 333
           |||||| ||| |||||||| | ||||||||
Sbjct: 272 aagagcgcaagcatgtatcaaccttcttaa 301



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>emb|AL590842.1| Yersinia pestis CO92 complete genome
          Length = 4653728

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 5       ccagttcctacccttccagcatttc 29
               |||||||| ||||||||||||||||
Sbjct: 4347357 ccagttccgacccttccagcatttc 4347381



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>gb|AE017042.1| Yersinia pestis biovar Microtus str. 91001, complete genome
          Length = 4595065

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 5       ccagttcctacccttccagcatttc 29
               |||||||| ||||||||||||||||
Sbjct: 3542182 ccagttccgacccttccagcatttc 3542158



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>gb|DQ769000.1| Synthetic construct Yersinia pestis clone FLH0140826.01X rep gene,
            complete sequence
          Length = 2076

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 5    ccagttcctacccttccagcatttc 29
            |||||||| ||||||||||||||||
Sbjct: 1618 ccagttccgacccttccagcatttc 1594



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>ref|XM_001114648.1| PREDICTED: Macaca mulatta similar to myb-like, SWIRM and MPN domains
            1 (LOC716415), mRNA
          Length = 4477

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 508  actgtatgatattcttatata 528
            |||||||||||||||||||||
Sbjct: 2399 actgtatgatattcttatata 2419



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>gb|CP000308.1| Yersinia pestis Antiqua, complete genome
          Length = 4702289

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      ccagttcctacccttccagcatttc 29
              |||||||| ||||||||||||||||
Sbjct: 178089 ccagttccgacccttccagcatttc 178065



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>gb|CP000305.1| Yersinia pestis Nepal516, complete genome
          Length = 4534590

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      ccagttcctacccttccagcatttc 29
              |||||||| ||||||||||||||||
Sbjct: 126353 ccagttccgacccttccagcatttc 126329



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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      ccagttcctacccttccagcatttc 29
              |||||||| ||||||||||||||||
Sbjct: 398331 ccagttccgacccttccagcatttc 398307



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>gb|AC099593.6| Mus musculus chromosome 10, clone RP23-447D24, complete sequence
          Length = 176068

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 47     ggagccacagagccatgtcgc 67
              |||||||||||||||||||||
Sbjct: 128546 ggagccacagagccatgtcgc 128526



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>emb|AL035411.28|HS592A1 Human DNA sequence from clone RP4-592A1 on chromosome 1p31.2-32.3
              Contains the 3' end of a novel gene (KIAA1915), an
              adenylate kinase 2 (AK2) pseudogene, the TACSTD2 gene for
              tumor-associated calcium signal transducer 2 and a CpG
              island, complete sequence
          Length = 146112

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    actgtatgatattcttatata 528
              |||||||||||||||||||||
Sbjct: 137447 actgtatgatattcttatata 137427



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>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 228043

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    ggagccacagagccatgtcgc 67
             |||||||||||||||||||||
Sbjct: 77708 ggagccacagagccatgtcgc 77688



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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      ccagttcctacccttccagcatttc 29
              |||||||| ||||||||||||||||
Sbjct: 195127 ccagttccgacccttccagcatttc 195103



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>emb|CR627323.1| Homo sapiens mRNA; cDNA DKFZp779J1554 (from clone DKFZp779J1554)
          Length = 4480

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 508  actgtatgatattcttatata 528
            |||||||||||||||||||||
Sbjct: 2368 actgtatgatattcttatata 2388



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>gb|U50300.1| Caenorhabditis elegans cosmid R03H4, complete sequence
          Length = 24384

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 141   gaaagaagtagcagtgggagcaaac 165
             |||||||||||||| ||||||||||
Sbjct: 23315 gaaagaagtagcagagggagcaaac 23291



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>gb|DQ445623.1| Lycopersicon esculentum clone BAC LE_HBa0181K01 LARD2
            retrotransposon, complete sequence
          Length = 3762

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 368  cttatgctctgtccagcatgaaag 391
            ||||||||||||||||||| ||||
Sbjct: 1768 cttatgctctgtccagcattaaag 1791



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>gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome 6, complete sequence
          Length = 222363

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   atattcttatatatgaaatgaaag 539
             |||||||||||||||| |||||||
Sbjct: 85414 atattcttatatatgacatgaaag 85391



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>gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, complete sequence
          Length = 182789

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    ttatggtgttcttatttgta 464
              ||||||||||||||||||||
Sbjct: 153389 ttatggtgttcttatttgta 153408



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>ref|XM_693181.1| PREDICTED: Danio rerio similar to Glra4a protein (LOC569772), mRNA
          Length = 2162

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 caaaaaacaagtcaggtttc 199
           ||||||||||||||||||||
Sbjct: 556 caaaaaacaagtcaggtttc 537



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>ref|NM_131782.1| Danio rerio glycine receptor, alpha 4a (glra4a), mRNA
 emb|AJ404970.1|DRE404970 Danio rerio mRNA for glycine receptor alphaZ2 subunit (glyR alpha
           gene)
          Length = 2045

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 caaaaaacaagtcaggtttc 199
           ||||||||||||||||||||
Sbjct: 919 caaaaaacaagtcaggtttc 900



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>gb|AC019231.7| Homo sapiens BAC clone RP11-573O16 from 2, complete sequence
          Length = 187268

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    ttcttatttgtaacatgaat 472
              ||||||||||||||||||||
Sbjct: 163116 ttcttatttgtaacatgaat 163097



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>gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, complete sequence
          Length = 210320

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     gcccaccatccccatgccaa 110
              ||||||||||||||||||||
Sbjct: 169415 gcccaccatccccatgccaa 169434



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>gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complete sequence
          Length = 179961

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gcccaccatccccatgccaa 110
             ||||||||||||||||||||
Sbjct: 57749 gcccaccatccccatgccaa 57768



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>emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 in linkage group 14,
             complete sequence
          Length = 168697

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   caaaaaacaagtcaggtttc 199
             ||||||||||||||||||||
Sbjct: 34099 caaaaaacaagtcaggtttc 34118



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>gb|BC090676.1| Danio rerio glycine receptor, alpha 4a, mRNA (cDNA clone MGC:113093
           IMAGE:6894068), complete cds
          Length = 1720

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 caaaaaacaagtcaggtttc 199
           ||||||||||||||||||||
Sbjct: 570 caaaaaacaagtcaggtttc 551



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>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207864

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tgtcttgggcactccagaag 306
             ||||||||||||||||||||
Sbjct: 78137 tgtcttgggcactccagaag 78156



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>emb|AJ330097.1|HSA330097 Homo sapiens genomic sequence surrounding NotI site, clone NR1-XI1R
          Length = 727

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 tcttcttaagagaaccagggttcc 348
           |||||||||||||| |||||||||
Sbjct: 507 tcttcttaagagaaacagggttcc 484



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>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14,
              complete sequence
          Length = 183670

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    caaaaaacaagtcaggtttc 199
              ||||||||||||||||||||
Sbjct: 175116 caaaaaacaagtcaggtttc 175135



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     caggtttcaggacaaccatg 211
               ||||||||||||||||||||
Sbjct: 2265622 caggtttcaggacaaccatg 2265603


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 104,252,765
Number of extensions: 5471247
Number of successful extensions: 103748
Number of sequences better than 10.0: 34
Number of HSP's gapped: 103748
Number of HSP's successfully gapped: 34
Length of query: 568
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 546
Effective length of database: 18,508,616,841
Effective search space: 10105704795186
Effective search space used: 10105704795186
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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