| Clone Name | FLbaf150e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105784.1| Zea mays PCO113764 mRNA sequence Length = 588 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 259 gcttcggacttcatcaagcgtaagcacatgtcttgggcactccagaagagcacaaccatg 318 ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| Sbjct: 271 gcttcggacttcatcaagctgaagcacaaggcttgggcactccagaagagcacaaccatg 330 Query: 319 ta 320 || Sbjct: 331 ta 332
>emb|CT828378.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037D07, full insert sequence Length = 519 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303 ||||| ||||| || ||||| ||||||||||||| ||||||| | |||||||||| ||| Sbjct: 204 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 263 Query: 304 aagagcacaaccatgtatccatcttcttaa 333 |||||| ||| |||||||| | |||||||| Sbjct: 264 aagagcgcaagcatgtatcaaccttcttaa 293
>ref|NM_001052064.1| Oryza sativa (japonica cultivar-group) Os01g0971000 (Os01g0971000) mRNA, complete cds Length = 532 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303 ||||| ||||| || ||||| ||||||||||||| ||||||| | |||||||||| ||| Sbjct: 209 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 268 Query: 304 aagagcacaaccatgtatccatcttcttaa 333 |||||| ||| |||||||| | |||||||| Sbjct: 269 aagagcgcaagcatgtatcaaccttcttaa 298
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303 ||||| ||||| || ||||| ||||||||||||| ||||||| | |||||||||| ||| Sbjct: 42831542 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 42831601 Query: 304 aagagcacaaccatgtatccatcttcttaa 333 |||||| ||| |||||||| | |||||||| Sbjct: 42831602 aagagcgcaagcatgtatcaaccttcttaa 42831631
>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518C01 Length = 173555 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303 ||||| ||||| || ||||| ||||||||||||| ||||||| | |||||||||| ||| Sbjct: 25276 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 25335 Query: 304 aagagcacaaccatgtatccatcttcttaa 333 |||||| ||| |||||||| | |||||||| Sbjct: 25336 aagagcgcaagcatgtatcaaccttcttaa 25365
>dbj|AK120145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028J10, full insert sequence Length = 533 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303 ||||| ||||| || ||||| ||||||||||||| ||||||| | |||||||||| ||| Sbjct: 210 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 269 Query: 304 aagagcacaaccatgtatccatcttcttaa 333 |||||| ||| |||||||| | |||||||| Sbjct: 270 aagagcgcaagcatgtatcaaccttcttaa 299
>dbj|AK061660.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E01, full insert sequence Length = 535 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 244 gatgtggattcggtggcttcggacttcatcaagcgtaagcacatgtcttgggcactccag 303 ||||| ||||| || ||||| ||||||||||||| ||||||| | |||||||||| ||| Sbjct: 212 gatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcag 271 Query: 304 aagagcacaaccatgtatccatcttcttaa 333 |||||| ||| |||||||| | |||||||| Sbjct: 272 aagagcgcaagcatgtatcaaccttcttaa 301
>emb|AL590842.1| Yersinia pestis CO92 complete genome Length = 4653728 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 4347357 ccagttccgacccttccagcatttc 4347381
>gb|AE017042.1| Yersinia pestis biovar Microtus str. 91001, complete genome Length = 4595065 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 3542182 ccagttccgacccttccagcatttc 3542158
>gb|DQ769000.1| Synthetic construct Yersinia pestis clone FLH0140826.01X rep gene, complete sequence Length = 2076 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 1618 ccagttccgacccttccagcatttc 1594
>ref|XM_001114648.1| PREDICTED: Macaca mulatta similar to myb-like, SWIRM and MPN domains 1 (LOC716415), mRNA Length = 4477 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 actgtatgatattcttatata 528 ||||||||||||||||||||| Sbjct: 2399 actgtatgatattcttatata 2419
>gb|CP000308.1| Yersinia pestis Antiqua, complete genome Length = 4702289 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 178089 ccagttccgacccttccagcatttc 178065
>gb|CP000305.1| Yersinia pestis Nepal516, complete genome Length = 4534590 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 126353 ccagttccgacccttccagcatttc 126329
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 398331 ccagttccgacccttccagcatttc 398307
>gb|AC099593.6| Mus musculus chromosome 10, clone RP23-447D24, complete sequence Length = 176068 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ggagccacagagccatgtcgc 67 ||||||||||||||||||||| Sbjct: 128546 ggagccacagagccatgtcgc 128526
>emb|AL035411.28|HS592A1 Human DNA sequence from clone RP4-592A1 on chromosome 1p31.2-32.3 Contains the 3' end of a novel gene (KIAA1915), an adenylate kinase 2 (AK2) pseudogene, the TACSTD2 gene for tumor-associated calcium signal transducer 2 and a CpG island, complete sequence Length = 146112 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 actgtatgatattcttatata 528 ||||||||||||||||||||| Sbjct: 137447 actgtatgatattcttatata 137427
>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ggagccacagagccatgtcgc 67 ||||||||||||||||||||| Sbjct: 77708 ggagccacagagccatgtcgc 77688
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccagttcctacccttccagcatttc 29 |||||||| |||||||||||||||| Sbjct: 195127 ccagttccgacccttccagcatttc 195103
>emb|CR627323.1| Homo sapiens mRNA; cDNA DKFZp779J1554 (from clone DKFZp779J1554) Length = 4480 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 actgtatgatattcttatata 528 ||||||||||||||||||||| Sbjct: 2368 actgtatgatattcttatata 2388
>gb|U50300.1| Caenorhabditis elegans cosmid R03H4, complete sequence Length = 24384 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 gaaagaagtagcagtgggagcaaac 165 |||||||||||||| |||||||||| Sbjct: 23315 gaaagaagtagcagagggagcaaac 23291
>gb|DQ445623.1| Lycopersicon esculentum clone BAC LE_HBa0181K01 LARD2 retrotransposon, complete sequence Length = 3762 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 368 cttatgctctgtccagcatgaaag 391 ||||||||||||||||||| |||| Sbjct: 1768 cttatgctctgtccagcattaaag 1791
>gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome 6, complete sequence Length = 222363 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 atattcttatatatgaaatgaaag 539 |||||||||||||||| ||||||| Sbjct: 85414 atattcttatatatgacatgaaag 85391
>gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, complete sequence Length = 182789 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttatggtgttcttatttgta 464 |||||||||||||||||||| Sbjct: 153389 ttatggtgttcttatttgta 153408
>ref|XM_693181.1| PREDICTED: Danio rerio similar to Glra4a protein (LOC569772), mRNA Length = 2162 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caaaaaacaagtcaggtttc 199 |||||||||||||||||||| Sbjct: 556 caaaaaacaagtcaggtttc 537
>ref|NM_131782.1| Danio rerio glycine receptor, alpha 4a (glra4a), mRNA emb|AJ404970.1|DRE404970 Danio rerio mRNA for glycine receptor alphaZ2 subunit (glyR alpha gene) Length = 2045 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caaaaaacaagtcaggtttc 199 |||||||||||||||||||| Sbjct: 919 caaaaaacaagtcaggtttc 900
>gb|AC019231.7| Homo sapiens BAC clone RP11-573O16 from 2, complete sequence Length = 187268 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 ttcttatttgtaacatgaat 472 |||||||||||||||||||| Sbjct: 163116 ttcttatttgtaacatgaat 163097
>gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, complete sequence Length = 210320 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gcccaccatccccatgccaa 110 |||||||||||||||||||| Sbjct: 169415 gcccaccatccccatgccaa 169434
>gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complete sequence Length = 179961 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gcccaccatccccatgccaa 110 |||||||||||||||||||| Sbjct: 57749 gcccaccatccccatgccaa 57768
>emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 in linkage group 14, complete sequence Length = 168697 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caaaaaacaagtcaggtttc 199 |||||||||||||||||||| Sbjct: 34099 caaaaaacaagtcaggtttc 34118
>gb|BC090676.1| Danio rerio glycine receptor, alpha 4a, mRNA (cDNA clone MGC:113093 IMAGE:6894068), complete cds Length = 1720 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caaaaaacaagtcaggtttc 199 |||||||||||||||||||| Sbjct: 570 caaaaaacaagtcaggtttc 551
>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207864 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tgtcttgggcactccagaag 306 |||||||||||||||||||| Sbjct: 78137 tgtcttgggcactccagaag 78156
>emb|AJ330097.1|HSA330097 Homo sapiens genomic sequence surrounding NotI site, clone NR1-XI1R Length = 727 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tcttcttaagagaaccagggttcc 348 |||||||||||||| ||||||||| Sbjct: 507 tcttcttaagagaaacagggttcc 484
>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14, complete sequence Length = 183670 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caaaaaacaagtcaggtttc 199 |||||||||||||||||||| Sbjct: 175116 caaaaaacaagtcaggtttc 175135
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 caggtttcaggacaaccatg 211 |||||||||||||||||||| Sbjct: 2265622 caggtttcaggacaaccatg 2265603 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 104,252,765 Number of extensions: 5471247 Number of successful extensions: 103748 Number of sequences better than 10.0: 34 Number of HSP's gapped: 103748 Number of HSP's successfully gapped: 34 Length of query: 568 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 546 Effective length of database: 18,508,616,841 Effective search space: 10105704795186 Effective search space used: 10105704795186 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)