| Clone Name | FLbaf142e17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC140778.15| Mus musculus chromosome 1, clone RP24-446J17, complete sequence Length = 160859 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 466 aatgggagtcactgttggttctg 488 ||||||||||||||||||||||| Sbjct: 41884 aatgggagtcactgttggttctg 41862
>ref|XR_020763.1| PREDICTED: Pan troglodytes ATP-binding cassette, sub-family A, member 10 (ABCA10), mRNA Length = 5443 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 723 aaatgttgcaaaagaaagaggaaaatttaa 752 ||||||||||| ||||||||||||||||| Sbjct: 432 aaatgttgcaagggaaagaggaaaatttaa 461
>ref|NM_080282.2| Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 10 (ABCA10), mRNA Length = 6348 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 723 aaatgttgcaaaagaaagaggaaaatttaa 752 ||||||||||| ||||||||||||||||| Sbjct: 1338 aaatgttgcaagggaaagaggaaaatttaa 1367
>gb|AE017308.1| Mycoplasma mobile 163K complete genome Length = 777079 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 783 attttaatacagaagaaattga 804 |||||||||||||||||||||| Sbjct: 263939 attttaatacagaagaaattga 263918
>gb|AC131997.23| Mus musculus chromosome 15, clone RP23-381H9, complete sequence Length = 194206 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 gtactgaaaacatgaccaaaga 230 |||||||||||||||||||||| Sbjct: 151816 gtactgaaaacatgaccaaaga 151837
>gb|AC005050.3| Homo sapiens BAC clone CTB-30L5 from 7, complete sequence Length = 188374 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Minus Query: 814 ccttgtaaatgaatttaaaaatacaataaacact 847 ||||| ||||||| | |||||||||||||||||| Sbjct: 87104 ccttggaaatgaaataaaaaatacaataaacact 87071
>gb|AY247072.1|AY247066S07 Homo sapiens ATP-binding cassette sub-family A member 10 (ABCA10) gene, exon 7 Length = 247 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 723 aaatgttgcaaaagaaagaggaaaatttaa 752 ||||||||||| ||||||||||||||||| Sbjct: 166 aaatgttgcaagggaaagaggaaaatttaa 195
>gb|AY247065.1| Homo sapiens ATP-binding cassette sub-family A member 10 (ABCA10) mRNA, complete cds Length = 6333 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 723 aaatgttgcaaaagaaagaggaaaatttaa 752 ||||||||||| ||||||||||||||||| Sbjct: 1369 aaatgttgcaagggaaagaggaaaatttaa 1398
>gb|AY028900.1| Homo sapiens ATP-binding cassette A10 mRNA, complete cds Length = 6181 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 723 aaatgttgcaaaagaaagaggaaaatttaa 752 ||||||||||| ||||||||||||||||| Sbjct: 1338 aaatgttgcaagggaaagaggaaaatttaa 1367
>emb|AL139081.21| Human DNA sequence from clone RP11-179A7 on chromosome 13 Contains parts of 2 novel genes and the RFC3 gene for replication factor C (activator 1) 3, 38kDa, complete sequence Length = 185602 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 840 taaacactgtttcttattctga 861 |||||||||||||||||||||| Sbjct: 153793 taaacactgtttcttattctga 153772
>gb|AC005495.2| Homo sapiens chromosome 17, clone RP11-293K20, complete sequence Length = 185252 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 723 aaatgttgcaaaagaaagaggaaaatttaa 752 ||||||||||| ||||||||||||||||| Sbjct: 139571 aaatgttgcaagggaaagaggaaaatttaa 139542
>gb|AC114591.15| Mus musculus chromosome 7, clone RP23-478G2, complete sequence Length = 212299 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 826 atttaaaaatacaataaacactgtttctta 855 ||||| |||||||||||||||| ||||||| Sbjct: 189878 atttataaatacaataaacactttttctta 189907
>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete sequence Length = 221009 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 818 gtaaatgaatttaaaaatacaa 839 |||||||||||||||||||||| Sbjct: 211471 gtaaatgaatttaaaaatacaa 211450
>gb|AC113245.12| Mus musculus chromosome 7, clone RP23-175D5, complete sequence Length = 213428 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 826 atttaaaaatacaataaacactgtttctta 855 ||||| |||||||||||||||| ||||||| Sbjct: 45360 atttataaatacaataaacactttttctta 45389
>emb|Z81039.1|CEC25D7 Caenorhabditis elegans Cosmid C25D7, complete sequence Length = 42361 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 941 gattttcgtgccgaaatagagaaatt 966 ||||||||||| |||||||||||||| Sbjct: 25222 gattttcgtgctgaaatagagaaatt 25247
>ref|XM_001025551.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_01020740) mRNA, complete cds Length = 3948 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 829 taaaaatacaataaacactgt 849 ||||||||||||||||||||| Sbjct: 2037 taaaaatacaataaacactgt 2017
>ref|XM_001232671.1| PREDICTED: Gallus gallus similar to Ellis-van Creveld syndrome 2-like protein (LOC770095), mRNA Length = 3936 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 722 aaaatgttgcaaaagaaagag 742 ||||||||||||||||||||| Sbjct: 2035 aaaatgttgcaaaagaaagag 2055
>gb|AC190296.5| Rhesus Macaque BAC CH250-120D8 () complete sequence Length = 169365 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 825 aatttaaaaatacaataaaca 845 ||||||||||||||||||||| Sbjct: 20798 aatttaaaaatacaataaaca 20778
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 716 atagcaaaaatgttgcaaaag 736 ||||||||||||||||||||| Sbjct: 22646932 atagcaaaaatgttgcaaaag 22646952
>emb|CR385040.11| Zebrafish DNA sequence from clone DKEYP-101C8 in linkage group 12, complete sequence Length = 170728 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tgaatttaaaaatacaataaa 843 ||||||||||||||||||||| Sbjct: 98791 tgaatttaaaaatacaataaa 98811
>emb|BX537123.15| Zebrafish DNA sequence from clone CH211-202M24 in linkage group 13, complete sequence Length = 202967 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 828 ttaaaaatacaataaacactgtttc 852 ||||||||||| ||||||||||||| Sbjct: 165062 ttaaaaatacagtaaacactgtttc 165038
>gb|AC185534.1| Drosophila melanogaster clone BACR39I04, complete sequence Length = 119461 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 716 atagcaaaaatgttgcaaaag 736 ||||||||||||||||||||| Sbjct: 68130 atagcaaaaatgttgcaaaag 68150
>emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in linkage group 17, complete sequence Length = 232846 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 745 aaatttaattgaacaagtcattgaaatttcgttgaaa 781 ||||||||||||| | ||||||||||||| |||||| Sbjct: 47301 aaatttaattgaaaacttcattgaaatttcattgaaa 47265
>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence Length = 248060 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 729 tgcaaaagaaagaggaaaatt 749 ||||||||||||||||||||| Sbjct: 172749 tgcaaaagaaagaggaaaatt 172729
>gb|AY581318.1| Gallus gallus Ellis-van Creveld syndrome 2-like protein mRNA, complete cds Length = 3955 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 722 aaaatgttgcaaaagaaagag 742 ||||||||||||||||||||| Sbjct: 2050 aaaatgttgcaaaagaaagag 2070
>gb|AC137839.19| Medicago truncatula clone mth2-34j11, complete sequence Length = 145073 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 728 ttgcaaaagaaagaggaaaat 748 ||||||||||||||||||||| Sbjct: 106904 ttgcaaaagaaagaggaaaat 106884
>gb|AC147483.13| Medicago truncatula clone mth2-22o7, complete sequence Length = 142205 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 728 ttgcaaaagaaagaggaaaat 748 ||||||||||||||||||||| Sbjct: 35306 ttgcaaaagaaagaggaaaat 35326
>gb|AC117600.9| Mus musculus chromosome 1, clone RP23-449C20, complete sequence Length = 195848 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1064 aatgacttgttggagaaagaa 1084 ||||||||||||||||||||| Sbjct: 164442 aatgacttgttggagaaagaa 164462
>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete sequence Length = 90448 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 865 aaaacttgatgaacaaggaaa 885 ||||||||||||||||||||| Sbjct: 58950 aaaacttgatgaacaaggaaa 58930
>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence Length = 198253 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1016 ttgcttggatgtaagcttggc 1036 ||||||||||||||||||||| Sbjct: 20807 ttgcttggatgtaagcttggc 20787
>emb|CT009553.4| M.truncatula DNA sequence from clone MTH2-115C19 on chromosome 3, complete sequence Length = 125987 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 728 ttgcaaaagaaagaggaaaat 748 ||||||||||||||||||||| Sbjct: 19506 ttgcaaaagaaagaggaaaat 19526
>emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 in linkage group 17, complete sequence Length = 198387 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 745 aaatttaattgaacaagtcattgaaatttcgttgaaa 781 ||||||||||||| | ||||||||||||| |||||| Sbjct: 155587 aaatttaattgaaaacttcattgaaatttcattgaaa 155623
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 827 tttaaaaatacaataaacact 847 ||||||||||||||||||||| Sbjct: 486819 tttaaaaatacaataaacact 486839
>emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chromosome X Contains a Sjogren syndrome antigen B (autoantigen La) (SSB) pseudogene, complete sequence Length = 169147 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 atggccaccgtcaaaaatggt 307 ||||||||||||||||||||| Sbjct: 89220 atggccaccgtcaaaaatggt 89240
>emb|AL732586.6| Human DNA sequence from clone RP11-549H3 on chromosome X, complete sequence Length = 125933 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 823 tgaatttaaaaatacaataaa 843 ||||||||||||||||||||| Sbjct: 62784 tgaatttaaaaatacaataaa 62764
>emb|AL589678.9| Human DNA sequence from clone RP11-74C3 on chromosome 9 Contains the 3' end of a novel gene, complete sequence Length = 134922 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 826 atttaaaaatacaataaacac 846 ||||||||||||||||||||| Sbjct: 7909 atttaaaaatacaataaacac 7929
>emb|AL355515.12| Human DNA sequence from clone RP4-640F2 on chromosome 1 Contains the 5' end of a novel gene (KIAA1573), complete sequence Length = 105208 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 782 cattttaatacagaagaaatt 802 ||||||||||||||||||||| Sbjct: 62321 cattttaatacagaagaaatt 62341
>emb|AL935262.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 11/11 Length = 304274 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 870 ttgatgaacaaggaaaaattg 890 ||||||||||||||||||||| Sbjct: 274495 ttgatgaacaaggaaaaattg 274475
>emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, BAC clone T14K23 Length = 101786 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 821 aatgaatttaaaaatacaataaaca 845 |||||||||||||||| |||||||| Sbjct: 16978 aatgaatttaaaaataaaataaaca 16954
>gb|AC084277.3| Homo sapiens BAC clone RP11-68O1 from 4, complete sequence Length = 150705 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 ctcgaaaatcctcacaaagca 529 ||||||||||||||||||||| Sbjct: 116340 ctcgaaaatcctcacaaagca 116320
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 827 tttaaaaatacaataaacact 847 ||||||||||||||||||||| Sbjct: 32327 tttaaaaatacaataaacact 32347
>gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, complete sequence Length = 211924 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1064 aatgacttgttggagaaagaa 1084 ||||||||||||||||||||| Sbjct: 186753 aatgacttgttggagaaagaa 186733
>gb|AC109197.9| Mus musculus chromosome 1, clone RP23-309A8, complete sequence Length = 255342 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1016 ttgcttggatgtaagcttggc 1036 ||||||||||||||||||||| Sbjct: 4819 ttgcttggatgtaagcttggc 4839
>gb|AF026294.1|RNPLII1 Rattus norvegicus placental lactogen II (rPLII) gene, 5' flanking region and exon 1 Length = 4053 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 722 aaaatgttgcaaaagaaagag 742 ||||||||||||||||||||| Sbjct: 2307 aaaatgttgcaaaagaaagag 2327 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 722 aaaatgttgcaaaagaaagag 742 ||||||||||||||||||||| Sbjct: 3072 aaaatgttgcaaaagaaagag 3092 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 237,020,398 Number of extensions: 14363692 Number of successful extensions: 306513 Number of sequences better than 10.0: 44 Number of HSP's gapped: 306513 Number of HSP's successfully gapped: 45 Length of query: 1162 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1139 Effective length of database: 18,503,978,556 Effective search space: 21076031575284 Effective search space used: 21076031575284 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)