ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf144k14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC125120.4| Mus musculus BAC clone RP24-267M16 from chromosom... 46 0.33
2gb|AC147248.5| Mus musculus BAC clone RP24-83D19 from 1, complet... 46 0.33
3gb|AC135396.32| Medicago truncatula clone mth2-33o18, complete s... 44 1.3
4gb|AC187271.3| Gallus gallus BAC clone CH261-85A21 from chromoso... 42 5.2
5gb|AC187595.2| Gallus gallus BAC clone CH261-69P10 from chromoso... 42 5.2
6gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 1... 42 5.2
7dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 42 5.2
8ref|XM_389862.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 5.2
9gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 42 5.2
10gb|BC034719.1| Mus musculus midnolin, mRNA (cDNA clone MGC:28080... 42 5.2
11gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 42 5.2
12dbj|AK154535.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 5.2
13gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 42 5.2
14dbj|AK164324.1| Mus musculus 12 days embryo spinal ganglion cDNA... 42 5.2
15gb|AC115986.3| Homo sapiens chromosome 18, clone RP11-112C14, co... 42 5.2
16dbj|AK164651.1| Mus musculus 13 days embryo stomach cDNA, RIKEN ... 42 5.2
17gb|AC027137.8| Staphylococcus aureus clone sabac-123, complete s... 42 5.2
18gb|AC018517.7| Homo sapiens, clone RP11-115N12, complete sequence 42 5.2
19emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 42 5.2
20dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 42 5.2
21dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 42 5.2
22emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chr... 42 5.2
23ref|NM_021565.1| Mus musculus midnolin (Midn), mRNA >gi|9229933|... 42 5.2
24gb|AC140229.3| Mus musculus BAC clone RP24-488O12 from 10, compl... 42 5.2
25emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 42 5.2
26emb|AL355099.5|CNS05TCI Human chromosome 14 DNA sequence BAC R-1... 42 5.2 
>gb|AC125120.4| Mus musculus BAC clone RP24-267M16 from chromosome 1, complete sequence
          Length = 183382
 Score = 46.1 bits (23), Expect = 0.33
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1145  aagatacagattgctaaacacat 1167
             |||||||||||||||||||||||
Sbjct: 54433 aagatacagattgctaaacacat 54411
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>gb|AC147248.5| Mus musculus BAC clone RP24-83D19 from 1, complete sequence
          Length = 176741

 Score = 46.1 bits (23), Expect = 0.33
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1145   aagatacagattgctaaacacat 1167
              |||||||||||||||||||||||
Sbjct: 174303 aagatacagattgctaaacacat 174281
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>gb|AC135396.32| Medicago truncatula clone mth2-33o18, complete sequence
          Length = 132211

 Score = 44.1 bits (22), Expect = 1.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 94    ttacatattatcattagggttt 115
             ||||||||||||||||||||||
Sbjct: 28710 ttacatattatcattagggttt 28689
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>gb|AC187271.3| Gallus gallus BAC clone CH261-85A21 from chromosome z, complete
             sequence
          Length = 218023

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 966   agtgtatacaatttatactgg 986
             |||||||||||||||||||||
Sbjct: 35528 agtgtatacaatttatactgg 35548
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>gb|AC187595.2| Gallus gallus BAC clone CH261-69P10 from chromosome z, complete sequence
          Length = 188485

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     ttacatattatcattagggtt 114
              |||||||||||||||||||||
Sbjct: 127000 ttacatattatcattagggtt 127020
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>gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 10, complete sequence
          Length = 216489

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 163    gcgcaggaaggcacggcggga 183
              |||||||||||||||||||||
Sbjct: 156455 gcgcaggaaggcacggcggga 156475
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1219420 aagcaaaagattacattcaga 1219400
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>ref|XM_389862.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09686.1)
            partial mRNA
          Length = 2094

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1101 gcaagcttcacaaagagaaga 1121
            |||||||||||||||||||||
Sbjct: 2042 gcaagcttcacaaagagaaga 2062
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1182671 aagcaaaagattacattcaga 1182651
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>gb|BC034719.1| Mus musculus midnolin, mRNA (cDNA clone MGC:28080 IMAGE:3710931),
            complete cds
          Length = 3699

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  gcgcaggaaggcacggcggga 183
            |||||||||||||||||||||
Sbjct: 1758 gcgcaggaaggcacggcggga 1778
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1078897 aagcaaaagattacattcaga 1078877
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>dbj|AK154535.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630044M20
            product:midnolin, full insert sequence
          Length = 3646

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  gcgcaggaaggcacggcggga 183
            |||||||||||||||||||||
Sbjct: 1729 gcgcaggaaggcacggcggga 1749
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1158852 aagcaaaagattacattcaga 1158832
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>dbj|AK164324.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130047C19 product:midnolin, full
            insert sequence
          Length = 2669

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  gcgcaggaaggcacggcggga 183
            |||||||||||||||||||||
Sbjct: 1677 gcgcaggaaggcacggcggga 1697
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>gb|AC115986.3| Homo sapiens chromosome 18, clone RP11-112C14, complete sequence
          Length = 179590

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   ggaagaggagagagggagtgt 389
             |||||||||||||||||||||
Sbjct: 25006 ggaagaggagagagggagtgt 25026
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>dbj|AK164651.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched
            library, clone:D530019J18 product:midnolin, full insert
            sequence
          Length = 3596

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  gcgcaggaaggcacggcggga 183
            |||||||||||||||||||||
Sbjct: 1676 gcgcaggaaggcacggcggga 1696
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>gb|AC027137.8| Staphylococcus aureus clone sabac-123, complete sequence
          Length = 49643

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 896   aagcaaaagattacattcaga 916
             |||||||||||||||||||||
Sbjct: 45360 aagcaaaagattacattcaga 45380
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>gb|AC018517.7| Homo sapiens, clone RP11-115N12, complete sequence
          Length = 180917

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 369    ggaagaggagagagggagtgt 389
              |||||||||||||||||||||
Sbjct: 131622 ggaagaggagagagggagtgt 131642
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1171532 aagcaaaagattacattcaga 1171512
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1142859 aagcaaaagattacattcaga 1142839
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1143092 aagcaaaagattacattcaga 1143072
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>emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chromosome X, complete
             sequence
          Length = 120359

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 825   acacaaggtttgattattttg 845
             |||||||||||||||||||||
Sbjct: 25054 acacaaggtttgattattttg 25034
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>ref|NM_021565.1| Mus musculus midnolin (Midn), mRNA
 dbj|AB036882.1| Mus musculus mRNA for midnolin, complete cds
          Length = 3708

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  gcgcaggaaggcacggcggga 183
            |||||||||||||||||||||
Sbjct: 1788 gcgcaggaaggcacggcggga 1808
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>gb|AC140229.3| Mus musculus BAC clone RP24-488O12 from 10, complete sequence
          Length = 156601

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 163  gcgcaggaaggcacggcggga 183
            |||||||||||||||||||||
Sbjct: 6604 gcgcaggaaggcacggcggga 6624
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 896     aagcaaaagattacattcaga 916
               |||||||||||||||||||||
Sbjct: 1110076 aagcaaaagattacattcaga 1110056
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>emb|AL355099.5|CNS05TCI Human chromosome 14 DNA sequence BAC R-1A16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155827

 Score = 42.1 bits (21), Expect = 5.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1133   tatattaaggagaagatacag 1153
              |||||||||||||||||||||
Sbjct: 139020 tatattaaggagaagatacag 139000


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 231,484,394
Number of extensions: 12089826
Number of successful extensions: 238489
Number of sequences better than 10.0: 26
Number of HSP's gapped: 238489
Number of HSP's successfully gapped: 26
Length of query: 1366
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1343
Effective length of database: 18,503,978,556
Effective search space: 24850843200708
Effective search space used: 24850843200708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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