ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf144i18 |
|---|---|
| Clone Library Name | barley_pub |
>Q5SPB6:CHAC1_DANRE Cation transport regulator-like protein 1 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 196 Score = 120 bits (300), Expect = 2e-26 Identities = 65/162 (40%), Positives = 94/162 (58%), Gaps = 2/162 (1%) Frame = +2 Query: 329 SGRMVLWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTLESE 508 +G+ LW+FGYGSL+W P F + +G+IKGYKR F HRG + P R TL E Sbjct: 8 AGKSSLWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEE 67 Query: 509 DEAICWGIAYCVKGGLEKEREAMQYLERRECEYDQKI--SVDFYKDGNSLEPAVTDVLVF 682 D+ WG+A+ V G + E+++YL RE + +VDF+ G + P LV+ Sbjct: 68 DDVCTWGVAFEVTG--SQMEESLKYLNVREAVRGGYLTRAVDFFPRGTNQPP--VQALVY 123 Query: 683 VSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSM 808 ++TPD N YLGPA+ E++A QIA G +G+N +YL + Sbjct: 124 IATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRL 162
>Q8R3J5:CHAC1_MOUSE Cation transport regulator-like protein 1 - Mus musculus (Mouse)| Length = 223 Score = 113 bits (283), Expect = 1e-24 Identities = 70/185 (37%), Positives = 97/185 (52%), Gaps = 5/185 (2%) Frame = +2 Query: 344 LWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTLESEDEAIC 523 LW+FGYGSL+W P F + D +GF++GY R F HRG+ + P R TL + E Sbjct: 34 LWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCT 93 Query: 524 WGIAYCVKGGLEKEREAMQYLERREC---EYDQKISVDFYKDGNSLEPAVTDVLVFVSTP 694 WG+AY V+G E+ EA++YL RE YD K V FY +P L +V+TP Sbjct: 94 WGVAYQVRG--EQVNEALKYLNVREAVLGGYDTK-EVTFYPQDTPDQPLT--ALAYVATP 148 Query: 695 DPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSME--KALSNISHEDDSIIVLADE 868 N YLGPA E +A QI G +G+N +YL + L +D+ + + D Sbjct: 149 Q---NPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLEAIVDA 205 Query: 869 VRKVL 883 V +L Sbjct: 206 VGTLL 210
>Q9BUX1:CHAC1_HUMAN Cation transport regulator-like protein 1 - Homo sapiens (Human)| Length = 222 Score = 112 bits (280), Expect = 3e-24 Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 5/193 (2%) Frame = +2 Query: 320 KNRSGRMVLWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTL 499 +N LW+FGYGSL+W P F + D +GF++GY R F HRG+ + P R TL Sbjct: 25 RNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTL 84 Query: 500 ESEDEAICWGIAYCVKGGLEKEREAMQYLERREC---EYDQKISVDFYKDGNSLEPAVTD 670 + E WG+AY V+G E+ +A++YL RE YD K V FY +P Sbjct: 85 LEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTK-EVTFYPQDAPDQP--LK 139 Query: 671 VLVFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSME--KALSNISHEDD 844 L +V+TP N YLGPA E +A QI G +G+N +YL + L +D+ Sbjct: 140 ALAYVATPQ---NPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDE 196 Query: 845 SIIVLADEVRKVL 883 + + D V +L Sbjct: 197 HLAAIVDAVGTML 209
>P39163:CHAC_ECOLI Cation transport protein chaC - Escherichia coli| Length = 231 Score = 81.3 bits (199), Expect = 8e-15 Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 4/187 (2%) Frame = +2 Query: 344 LWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTLESEDEAIC 523 +W+FGYGSL+WNP +F + G + G+ R F L RGT P R L+ Sbjct: 47 VWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT- 105 Query: 524 WGIAYCVKGGLEKEREAMQYLERRE----CEYDQKISVDFYKDGNSLEPAVTDVLVFVST 691 G+AY + E + + L +RE C +D DG ++ + +VF+ Sbjct: 106 -GVAYRLPE--ETLEQELTLLWKREMITGCYLPTWCQLDL-DDGRTV-----NAIVFIMD 156 Query: 692 PDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDSIIVLADEV 871 P + Y + +A IA ASGP G N YLFS+E+ L + +DD + L V Sbjct: 157 P---RHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSV 213 Query: 872 RKVLGRS 892 +K+L + Sbjct: 214 KKLLAEN 220
>P32656:CHAC_YEAST Cation transport regulator-like protein - Saccharomyces cerevisiae| (Baker's yeast) Length = 232 Score = 75.9 bits (185), Expect = 3e-13 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 43/205 (20%) Frame = +2 Query: 344 LWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTL-------- 499 +WV GYGSLI+ P + +I I G+ R F + DHRGTP +P R TL Sbjct: 8 IWVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIR 67 Query: 500 -----------------ESEDEAICWGIAYCVKGGLEKEREAMQYLERRECE----YDQK 616 + D+ + G+ Y + E +E +YL RE ++ + Sbjct: 68 QTAFLKNVNLYSESAPIQDPDDLVTIGVVYYIPP--EHAQEVREYLNVREQNGYTLHEVE 125 Query: 617 ISVDFYKD-----GNSLE---------PAVTDVLVFVSTPDPVGNKYYLGPAALEDMARQ 754 + ++ ++ G +LE V V++ T D N+ ++GP +++ A+ Sbjct: 126 VHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTID---NEAFVGPETVDETAKV 182 Query: 755 IATASGPNGYNRDYLFSMEKALSNI 829 IA + GP+G N +YL +E+AL+ + Sbjct: 183 IAVSHGPSGSNYEYLAKLEQALAQM 207
>Q60925:DBP_MOUSE D site-binding protein - Mus musculus (Mouse)| Length = 325 Score = 33.9 bits (76), Expect = 1.4 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Frame = -3 Query: 505 GFKGASPGRM----LRRASMVNASEIEGPLVALDESEDLVVEIEAGVPDQGPVSEDPQHH 338 G GA PG LR N+ E L E E A VP G + P Sbjct: 17 GPAGAPPGGGALLGLRSLLQGNSKPKEPASCLLKEKERKATLPSAPVPGPGLETAGPADA 76 Query: 337 PAASVFPLQTLAGGGAPERMPREGPAAAPAVFSP 236 P+ +V +GGG+P R GP A P++F+P Sbjct: 77 PSGAV------SGGGSPRG--RSGPVAGPSLFAP 102
>Q15735:PI5PA_HUMAN Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A - Homo| sapiens (Human) Length = 1006 Score = 33.5 bits (75), Expect = 1.9 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -3 Query: 376 PDQGPVSEDPQHHPAASVFPLQTLAGGG-----APERMPREGPAAAPAVFSP 236 P+ P S D + P ASV P TLA G A E P E P+ V SP Sbjct: 157 PNLAPTSRDQKQEPPASVGPKPTLAASGLSLALASEEQPPELPSTPSPVPSP 208
>P13334:VG20_BPT4 Structural protein of head - Bacteriophage T4| Length = 524 Score = 32.7 bits (73), Expect = 3.2 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 925 WYVGAGNLLLCRPAQHLPHLIRKHNDRVVFMAYIGQ 818 WYV GN+ + A+H+ H++ +RVV+ A G+ Sbjct: 285 WYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGK 320
>P17437:XP2_XENLA Skin secretory protein xP2 precursor - Xenopus laevis (African| clawed frog) Length = 439 Score = 32.3 bits (72), Expect = 4.2 Identities = 20/47 (42%), Positives = 22/47 (46%) Frame = -3 Query: 388 EAGVPDQGPVSEDPQHHPAASVFPLQTLAGGGAPERMPREGPAAAPA 248 E G P P +E + PA P A GGAP P EG A APA Sbjct: 59 EGGAPAPAP-AEGAEPAPADGGAPAPAPAEGGAPAPAPAEGGAPAPA 104 Score = 31.2 bits (69), Expect = 9.4 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Frame = -3 Query: 448 SEIEGPLVALDESE---DLVVEIEAGVPDQGPVSEDPQHHPAASVFPLQTLAGGGAPERM 278 +E E P A E E E EA P +G E P PA P A GGAP Sbjct: 264 AEGEAPAPAPAEGEAPAPAPAEGEAPAPAEG---EAPAPAPAEGEAPAPAPAEGGAPSPA 320 Query: 277 PREGPAAAPA 248 PAAAPA Sbjct: 321 EGGAPAAAPA 330
>Q62901:RERE_RAT Arginine-glutamic acid dipeptide repeats protein - Rattus norvegicus| (Rat) Length = 1559 Score = 32.3 bits (72), Expect = 4.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 119 PQIPRRGHHYPLRPRYNCSPTTVFSPPPLLRPETP 223 PQ+ GH +RP + PTT+ + PP + P+TP Sbjct: 1213 PQLSGPGH---MRPSFEPPPTTIAAVPPYIGPDTP 1244
>Q80TZ9:RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein - Mus musculus| (Mouse) Length = 1558 Score = 32.3 bits (72), Expect = 4.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 119 PQIPRRGHHYPLRPRYNCSPTTVFSPPPLLRPETP 223 PQ+ GH +RP + PTT+ + PP + P+TP Sbjct: 1212 PQLSGPGH---MRPSFEPPPTTIAAVPPYIGPDTP 1243
>Q9P2R6:RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein - Homo sapiens| (Human) Length = 1566 Score = 32.3 bits (72), Expect = 4.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 119 PQIPRRGHHYPLRPRYNCSPTTVFSPPPLLRPETP 223 PQ+ GH +RP + PTT+ + PP + P+TP Sbjct: 1220 PQLSGPGH---MRPSFEPPPTTIAAVPPYIGPDTP 1251
>Q1GZE9:ILVC_METFK Ketol-acid reductoisomerase - Methylobacillus flagellatus (strain| KT / ATCC 51484 / DSM 6875) Length = 338 Score = 32.0 bits (71), Expect = 5.5 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Frame = +2 Query: 497 LESEDEAICWGIAYCVKGGLEKEREAMQYLERR--ECEYDQKISVDFYKDGNSLEPAVTD 670 L E +C G VK G E EA E EC ++ K+ VD +G + + Sbjct: 191 LFGEQAVLCGGAVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGG-----IAN 245 Query: 671 VLVFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDY 796 + +S G +Y GP + D AR N N DY Sbjct: 246 MNYSISNNAEYG-EYVTGPRVIADQARAAMKECLKNIQNGDY 286
>P16443:DBP_RAT D site-binding protein - Rattus norvegicus (Rat)| Length = 325 Score = 32.0 bits (71), Expect = 5.5 Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Frame = -3 Query: 505 GFKGASPGRM----LRRASMVNASEIEGPLVALDESEDLVVEIEAGVPDQGPVSEDPQHH 338 G GA PG LR N+ E L E E A VP GPV E Sbjct: 17 GPAGAPPGGGALLGLRSLLQGNSKPKEPASCLLKEKERKATLPSAPVP--GPVLETAGPA 74 Query: 337 PAASVFPLQTLAGGGAPERMPREGPAAAPAVFSP 236 A P ++GGG+P R GP A P++F+P Sbjct: 75 DA----PTGAVSGGGSPRG--RSGPVAGPSLFAP 102
>P18694:HSP72_USTMA Heat shock 70 kDa protein 2 - Ustilago maydis (Smut fungus)| Length = 645 Score = 31.2 bits (69), Expect = 9.4 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = -3 Query: 355 EDPQHHPAASVFPLQTL---AGGGAPERMPREGPAAAPAVFSPGRTD 224 +D Q V P+ T A GGAP MP P AAP +PG D Sbjct: 591 KDKQKEIEEQVNPIMTKIYSAAGGAPGGMPGGAPGAAPGGAAPGGDD 637 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 213,953,635 Number of extensions: 4751846 Number of successful extensions: 15523 Number of sequences better than 10.0: 15 Number of HSP's gapped: 15489 Number of HSP's successfully gapped: 16 Length of query: 416 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 300 Effective length of database: 68,868,219 Effective search space: 20660465700 Effective search space used: 20660465700 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
