| Clone Name | FLbaf149g10 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os10g32970:12010.t02605:unspliced-genomic eukaryotic translation initiation factor 4E-2, putative, expressed| Length = 3400 Score = 121 bits (258), Expect(6) = 1e-85 Identities = 46/56 (82%), Positives = 49/56 (87%) Frame = +3 / +1 Query: 306 LYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKANLDTMWLET 473 LYDQIFRPSK+ +ADFHLFKAGVEPKWEDPECANGGKWTV SRK L+ MWLET Sbjct: 1324 LYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLET 1491 Score = 105 bits (223), Expect(6) = 1e-85 Identities = 37/41 (90%), Positives = 38/41 (92%) Frame = +3 / +1 Query: 180 PHKLQRQWTFWYDIQSKPKPGAAWGTSLKKGYTFDTVEEFW 302 PHKL RQW FWYDIQSKPKPGAAWGTSL+K YTFDTVEEFW Sbjct: 229 PHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFW 351 Score = 89.5 bits (189), Expect(6) = 1e-85 Identities = 37/42 (88%), Positives = 41/42 (97%) Frame = +3 / +1 Query: 477 MALIGEQFDESQEICGVVSSVRQRQDKLSLWTKTASNEAVQV 602 MALIGEQFDES+EICGVV+SVRQR DKL+LWT+TASNEAVQV Sbjct: 1624 MALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQV 1749 Score = 60.6 bits (126), Expect(6) = 1e-85 Identities = 21/25 (84%), Positives = 25/25 (100%) Frame = +3 / +2 Query: 591 AVQVDIGKKWKEVIDYNDKMVYSFH 665 A+QV+IGKKWKE++DYNDKMVYSFH Sbjct: 2591 ALQVNIGKKWKEIVDYNDKMVYSFH 2665 Score = 29.5 bits (58), Expect(6) = 1e-85 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 / +1 Query: 667 MTREVRNQAEVDDTPCKA 720 MT RNQAEVD T CK+ Sbjct: 2785 MTPRGRNQAEVDGTTCKS 2838 Score = 22.6 bits (43), Expect(6) = 1e-85 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +3 / +1 Query: 81 DMAEVEAALPVAATT 125 DMAEVEAA AA T Sbjct: 142 DMAEVEAAPIAAAET 186 Score = 108 bits (230), Expect(5) = 2e-73 Identities = 49/62 (79%), Positives = 50/62 (80%) Frame = -3 / -3 Query: 484 RAMHVSSHMVSRLAFLLDITVHLPPFAHSGSSHFGSTPALNK*KSALPTNLLGRKI*SYK 305 R VSSHM SR+ FLL TVHLPPFAHSGSSHFGSTPALNK*KSA LLGRKI*SYK Sbjct: 1502 RKCTVSSHMFSRVVFLLHGTVHLPPFAHSGSSHFGSTPALNK*KSAFTVTLLGRKI*SYK 1323 Query: 304 HQ 299 Q Sbjct: 1322 LQ 1317 Score = 84.9 bits (179), Expect(5) = 2e-73 Identities = 34/41 (82%), Positives = 34/41 (82%) Frame = -3 / -3 Query: 301 QNSSTVSKV*PFLSEVPQAAPGLGLDWMSYQKVHCRCSLCG 179 QNSSTVSKV* SEVP AAPGLGLDWMSYQ HC CSLCG Sbjct: 350 QNSSTVSKV*ALRSEVPHAAPGLGLDWMSYQNAHCLCSLCG 228 Score = 83.1 bits (175), Expect(5) = 2e-73 Identities = 38/47 (80%), Positives = 39/47 (82%) Frame = -3 / -3 Query: 616 FLPMST*TASLLAVLVHNESLSCLWRTLETTPQISWLSSNCSPIRAM 476 F T*TASLLAVLVHN SLS LWRTL TTPQIS LSSNCSPIRA+ Sbjct: 1763 FFKKPT*TASLLAVLVHNASLSPLWRTLATTPQISSLSSNCSPIRAI 1623 Score = 56.1 bits (116), Expect(5) = 2e-73 Identities = 20/22 (90%), Positives = 20/22 (90%) Frame = -1 / -3 Query: 663 GSCRPSYHCSQ*PPSISCQCLP 598 GSCRPSYHCSQ PSISCQCLP Sbjct: 2663 GSCRPSYHCSQQSPSISCQCLP 2598 Score = 35.0 bits (70), Expect(5) = 2e-73 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 / -1 Query: 715 YTVYRPPLLGF*LLESS 665 YT+YRPPLLGF LL SS Sbjct: 2833 YTLYRPPLLGFSLLASS 2783 Score = 102 bits (217), Expect(5) = 3e-56 Identities = 41/55 (74%), Positives = 44/55 (80%) Frame = -2 / -2 Query: 473 RFKPHGIKVGLPARYHSPFAPICALWIFPLWFYPSLE*MKISTSYQLTRTENLII 309 RFKPH +K GLPA +HSPFAPIC LW+FPLWFY SLE*MKIS L TENLII Sbjct: 1491 RFKPHVLKGGLPATWHSPFAPICTLWVFPLWFYTSLE*MKISIYCHLAWTENLII 1327 Score = 73.5 bits (154), Expect(5) = 3e-56 Identities = 30/41 (73%), Positives = 35/41 (85%) Frame = -1 / -1 Query: 600 PEQLHYWQS*SIMKAYPVSGGH*RQHHKFPGFHRTALQSEP 478 PE+LH WQS*S M+A +SGGH*+Q HKFP FH+TALQSEP Sbjct: 1747 PERLHCWQS*STMQACLLSGGH*QQLHKFPHFHQTALQSEP 1625 Score = 55.1 bits (114), Expect(5) = 3e-56 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -2 / -1 Query: 665 VEAVDHLIIVVNNLLPFLANVYLNS 591 +EAVDHLIIVVNNLLPFLANVYL S Sbjct: 2665 MEAVDHLIIVVNNLLPFLANVYLQS 2591 Score = 46.9 bits (96), Expect(5) = 3e-56 Identities = 22/38 (57%), Positives = 23/38 (60%) Frame = -2 / -2 Query: 302 PELFDGVEGVALFERXXXXXXXXXXXLDVVPEGPLPLQ 189 PEL DGVEGV L ER LDVVPE PLP+Q Sbjct: 351 PELLDGVEGVGLAERGPPRGAGLGLGLDVVPERPLPMQ 238 Score = 30.9 bits (61), Expect(5) = 3e-56 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 / -3 Query: 725 CAALHGVSSTSAWFLTSRVIV 663 C LH V STSAWFL VI+ Sbjct: 2843 CGDLHVVPSTSAWFLPLGVIL 2781 Score = 93.2 bits (197), Expect(6) = 6e-51 Identities = 41/55 (74%), Positives = 44/55 (80%) Frame = +2 / +3 Query: 308 I*SDFPSE*VGRKC*FSFIQGWGRTKVGRSRVRKWGQMDCDI*QEGQP*YHVA*N 472 +*SDFPS+ KC*FSFIQGW RTKVGR RV KWGQMDC +*QE P* HVA*N Sbjct: 1326 V*SDFPSKQGDSKC*FSFIQGWCRTKVGRPRVCKWGQMDCAM*QEDHP*EHVA*N 1490 Score = 65.2 bits (136), Expect(6) = 6e-51 Identities = 30/41 (73%), Positives = 31/41 (75%) Frame = +2 / +3 Query: 479 GSDWRAVR*KPGNLWCCL*CPPETG*AFIMD*DCQ**SCSG 601 GSDWRAV *K GNLW C *CPPE A I+D*DCQ *S SG Sbjct: 1626 GSDWRAV**K*GNLWSCC*CPPERRQACIVD*DCQQ*SRSG 1748 Score = 52.4 bits (108), Expect(6) = 6e-51 Identities = 23/24 (95%), Positives = 23/24 (95%) Frame = +1 / +3 Query: 592 LFR*TLARNGRRLLTTMIRWSTAS 663 L R*TLARNGRRLLTTMIRWSTAS Sbjct: 2592 LCR*TLARNGRRLLTTMIRWSTAS 2663 Score = 43.7 bits (89), Expect(6) = 6e-51 Identities = 18/24 (75%), Positives = 21/24 (87%) Frame = +2 / +3 Query: 200 VDLLVRHPVQAQARRRLGHLAQKG 271 V +LVRHPVQAQARRR+G LA +G Sbjct: 249 VGVLVRHPVQAQARRRVGDLAPQG 320 Score = 28.6 bits (56), Expect(6) = 6e-51 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 / +2 Query: 674 EKSETKQRWTIHRV 715 ++ ETKQRWT+ RV Sbjct: 2792 QEGETKQRWTVQRV 2833 Score = 26.7 bits (52), Expect(6) = 6e-51 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +1 / +2 Query: 268 RATPSTPSKSSG 303 R TPSTPS+SSG Sbjct: 317 RPTPSTPSRSSG 352 Score = 81.7 bits (172), Expect(3) = 2e-33 Identities = 39/55 (70%), Positives = 43/55 (78%) Frame = +1 / +2 Query: 310 MIRFSVRVSW*EVLIFIYSRLG*NQSGKIQSAQMGANGL*YLAGRPTLIPCGLKR 474 MIRFSV+ +LIFIYSRL *NQSGK QS QMGANGL ++AGRP L CGLKR Sbjct: 1328 MIRFSVQAR*Q*MLIFIYSRLV*NQSGKTQSVQMGANGLCHVAGRPPLRTCGLKR 1492 Score = 62.5 bits (130), Expect(3) = 2e-33 Identities = 29/41 (70%), Positives = 30/41 (73%) Frame = +1 / +2 Query: 478 WL*LESSSMKARKFVVLSLVSARDRISFHYGLRLPVMKLFR 600 WL*LESS MK RKFV L LVSAR+ S H GL LP MK FR Sbjct: 1625 WL*LESSLMKVRKFVELLLVSAREETSLHCGLGLPAMKPFR 1747 Score = 46.4 bits (95), Expect(3) = 2e-33 Identities = 19/23 (82%), Positives = 21/23 (91%) Frame = +2 / +1 Query: 596 SGRHWQEMEGGY*LQ**DGLQLP 664 +G+HWQEMEG *LQ**DGLQLP Sbjct: 2596 AGKHWQEMEGDC*LQ**DGLQLP 2664 Score = 95.9 bits (203), Expect(3) = 3e-29 Identities = 40/54 (74%), Positives = 42/54 (77%) Frame = -1 / -1 Query: 471 FQATWYQGWPSC*ISQSICPHLRTLDLPTLVLPQP*INENQHFLPTYSDGKSDH 310 FQAT QGW SC ++QSICPHL TL LPTLVL QP*INENQH L DGKSDH Sbjct: 1489 FQATCSQGWSSCYMAQSICPHLHTLGLPTLVLHQP*INENQHLLSPCLDGKSDH 1328 Score = 50.1 bits (103), Expect(3) = 3e-29 Identities = 23/41 (56%), Positives = 26/41 (63%) Frame = -2 / -2 Query: 599 LNSFITGXXXXXXXXXXXLADTRDNTTNFLAFIELLSNQSH 477 LN FI G LADT +N+TNFL FI+LLSNQSH Sbjct: 1746 LNGFIAGSPSPQCKLVSSLADTSNNSTNFLTFIKLLSNQSH 1624 Score = 30.4 bits (60), Expect(3) = 3e-29 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = -1 / -2 Query: 717 LTRCIVHLCLVSDFSSH 667 LTRC VHLCLVS H Sbjct: 2835 LTRCTVHLCLVSPSWRH 2785 Score = 36.3 bits (73), Expect = 0.37 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = +3 / +3 Query: 636 YNDKMVYSFHDDSRSQKPSRGGRYTV* 716 Y D S DD++ +KPSRGGRY V* Sbjct: 2754 YLDGASTSMQDDAKREKPSRGGRYNV* 2834
>LOC_Os01g73880:12001.t06668:unspliced-genomic eukaryotic translation initiation factor 4E-1, putative, expressed| Length = 3265 Score = 79.9 bits (168), Expect(4) = 1e-42 Identities = 30/48 (62%), Positives = 34/48 (70%) Frame = +3 / +1 Query: 297 FWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSR 440 ++ LY+ I PSKLV ADFH FK +EPKWEDP CANGGKWT R Sbjct: 1882 YFSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGR 2025 Score = 67.5 bits (141), Expect(4) = 1e-42 Identities = 25/42 (59%), Positives = 34/42 (80%) Frame = +3 / +3 Query: 477 MALIGEQFDESQEICGVVSSVRQRQDKLSLWTKTASNEAVQV 602 +A+IGEQFD EICG V SVR +Q+++++WTK A+NEA QV Sbjct: 2142 LAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQV 2267 Score = 58.8 bits (122), Expect(4) = 1e-42 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = +3 / +1 Query: 180 PHKLQRQWTFWYDIQSKPKPGAAWGTSLKKGYTFDTVEEFW 302 PH L+ WTFW+D A WG+S++ +TF TVE+FW Sbjct: 250 PHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFW 372 Score = 35.9 bits (72), Expect(4) = 1e-42 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 / +1 Query: 597 QVDIGKKWKEVIDYNDKMVYSFHDDS 674 Q+ IGK+WKE +DY D + + H S Sbjct: 2854 QISIGKQWKEFLDYKDSIGFIVHVSS 2931 Score = 52.8 bits (109), Expect(2) = 3e-15 Identities = 29/46 (63%), Positives = 30/46 (65%) Frame = -3 / -1 Query: 616 FLPMST*TASLLAVLVHNESLSCLWRTLETTPQISWLSSNCSPIRA 479 +L ST* ASL A LV LSCL RTL T PQIS SNCSPI A Sbjct: 2281 YLRNST*AASLAAFLVQIAILSCLPRTLTTAPQISSP*SNCSPIIA 2144 Score = 49.2 bits (101), Expect(2) = 3e-15 Identities = 23/38 (60%), Positives = 25/38 (65%) Frame = -3 / -3 Query: 439 LLDITVHLPPFAHSGSSHFGSTPALNK*KSALPTNLLG 326 L + VHLPP A GSSHFGS L + KSA TNLLG Sbjct: 2024 LPQLKVHLPPLAQIGSSHFGSILFLKQWKSAPTTNLLG 1911 Score = 34.5 bits (69), Expect(2) = 0.001 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1 / -2 Query: 609 QCLPEQLHYWQS*SIMKAYPVSGGH*RQHHKFPGFHRTALQSEPCT 472 + +PEQLH+ *S +P H*+ HKF +R QS P T Sbjct: 2274 EIVPEQLHWQHF*SR*LFFPACHAH*QLLHKFHPHNRIVRQSLPIT 2137 Score = 27.6 bits (54), Expect(2) = 0.001 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -2 / -2 Query: 437 ARYHSPFAPICALWIFPLWFYPSLE*MKISTSYQLTRTENLII 309 A PF I IFP W L+ M++S+ QL +++I Sbjct: 2022 ATAEGPFTSISTDRIFPFWLDFILKAMEVSSHNQLAWVMDIVI 1894 Score = 40.0 bits (81), Expect(3) = 0.002 Identities = 20/43 (46%), Positives = 24/43 (55%) Frame = +2 / +2 Query: 473 VHGSDWRAVR*KPGNLWCCL*CPPETG*AFIMD*DCQ**SCSG 601 V G+DWR +R NLW *C + G +D* C *SCSG Sbjct: 2138 VIGNDWRTIRLWG*NLWSSC*CAWQAGKNSYLD*KCCQ*SCSG 2266 Score = 24.0 bits (46), Expect(3) = 0.002 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 / +2 Query: 328 RVSW*EVLIFIYSRLG*NQSGKIQSAQMGANG 423 + SW L I R+ +Q+GKI S M NG Sbjct: 1913 QASWLWELTSIALRIKSSQNGKILSVLMEVNG 2008 Score = 22.6 bits (43), Expect(3) = 0.002 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = +3 / +3 Query: 21 SLAAAHPPHPKTLGKQ 68 +L HPPHP L ++ Sbjct: 315 NLGKLHPPHPHLLHRR 362
>LOC_Os03g15590:12003.t01345:unspliced-genomic eukaryotic translation initiation factor 4E type 3, putative,| expressed Length = 3594 Score = 51.0 bits (105), Expect(2) = 1e-12 Identities = 19/40 (47%), Positives = 28/40 (70%) Frame = +3 / +3 Query: 477 MALIGEQFDESQEICGVVSSVRQRQDKLSLWTKTASNEAV 596 + L+G+Q D S ++CGVV SVR +D LS+W + AS+ V Sbjct: 2940 LVLVGDQLDYSDDVCGVVLSVRFNEDILSVWNRNASDHQV 3059 Score = 47.3 bits (97), Expect(2) = 1e-12 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = +3 / +1 Query: 288 VEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWE 392 VE FW Y + RP L D HLFK G+ P WE Sbjct: 583 VESFWVCYCHLTRPVSLPSPTDLHLFKEGIRPLWE 687
>LOC_Os03g36720:12003.t03140:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2082 Score = 35.4 bits (71), Expect = 0.70 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +3 / +1 Query: 282 DTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTV 428 D + WC + + P+++ GS +FKA W C K TV Sbjct: 721 DLLGHGWCTFLPQYLPARIFGSISSRIFKAPTRDMWSKMPCMPSNKSTV 867
>LOC_Os06g36770:12006.t03372:unspliced-genomic serine/threonine protein phosphatase 2A 55 kDa regulatory subunit| Bbeta isoform, putative, expressed Length = 7575 Score = 27.2 bits (53), Expect(2) = 0.96 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +1 / -2 Query: 70 GGGATWQRSKPRSRWQQRQK 129 GG W R + R RW++R++ Sbjct: 137 GGAMRWGRRRRRRRWRRRRR 78 Score = 24.9 bits (48), Expect(2) = 0.96 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 / -3 Query: 39 PPHPKTLGKQRRRRD 83 PP P G++RRRRD Sbjct: 289 PPPPPRGGRRRRRRD 245
>LOC_Os01g15480:12001.t01399:unspliced-genomic EMB3013, putative, expressed| Length = 7800 Score = 34.1 bits (68), Expect = 1.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 / +3 Query: 940 SLFKTYVCLFANWLFSPLLWALKSCQEKNLNFVV*S 1047 SLF + C+ LF +W L SC K L V+*+ Sbjct: 2148 SLFHYFYCMMCEILFVKTIWTLGSCIHKELYIVI*N 2255
>LOC_Os05g37960:12005.t03338:unspliced-genomic indole-3-acetic acid-amido synthetase GH3.2, putative| Length = 1868 Score = 32.2 bits (64), Expect(2) = 2.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 / +3 Query: 36 HPPHPKTLGKQRRRRDMAEVEAALP 110 HPP+P+T G++R R + A LP Sbjct: 39 HPPYPRTTGEERPARPSLSLPAILP 113 Score = 23.1 bits (44), Expect(2) = 2.0 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = +3 / +3 Query: 210 WYDIQSKPKPGAA 248 W+DI ++PK G A Sbjct: 993 WHDILARPKHGTA 1031
>LOC_Os01g28590:12001.t02552:unspliced-genomic hypothetical protein| Length = 519 Score = 25.8 bits (50), Expect(2) = 2.1 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = +1 / -1 Query: 55 PSESKGGGATWQRSKP 102 P+ GGG W+RS P Sbjct: 213 PTSGGGGGGGWRRSSP 166 Score = 25.4 bits (49), Expect(2) = 2.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 / -3 Query: 6 APLFLSLAAAHPPHPKTLGKQRRRR 80 AP S A +H PHP+ Q RRR Sbjct: 268 APPPASSATSHHPHPERHPDQWRRR 194
>LOC_Os03g30200:12003.t02631:unspliced-genomic mitochondrial import inner membrane translocase subunit Tim17,| putative, expressed Length = 4500 Score = 33.6 bits (67), Expect = 2.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 / -1 Query: 18 LSLAAAHPPHPKTLGKQRRRRDMAEVEAALP 110 L L HPPH +++G +RRRR + A P Sbjct: 129 LPLRRRHPPHSRSIGLRRRRRRRSAAAEAKP 37
>LOC_Os08g40919:12008.t04356:unspliced-genomic expressed protein| Length = 2887 Score = 33.6 bits (67), Expect = 2.5 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 / -2 Query: 832 LWHTEMLYALNFPRNIPRFQQTQ 900 +WH L ALNF +NI RF +T+ Sbjct: 174 IWHISRLKALNFRQNISRFSKTK 106
>LOC_Os01g09200:12001.t00797:unspliced-genomic serine/threonine-protein kinase 38, putative, expressed| Length = 9688 Score = 33.6 bits (67), Expect = 2.5 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 / +2 Query: 55 PSESKGGGATWQRSKPRSRWQQRQK 129 P+ +GGG W+R + R+RW+ R++ Sbjct: 86 PARQRGGGWWWRRRRWRARWRTRRR 160
>LOC_Os07g43420:12007.t03989:unspliced-genomic myb, DNA-binding, putative, expressed| Length = 4733 Score = 31.8 bits (63), Expect(2) = 2.6 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 / +2 Query: 18 LSLAAAHPPHPKTLGKQRRRRDMAEVEAALPVAATTETP 134 LSL ++ PP+P LG++RR + V+ P+A + P Sbjct: 32 LSLVSSSPPNPTQLGRRRRLPLESTVQKFPPLAPISPNP 148 Score = 24.4 bits (47), Expect(2) = 2.6 Identities = 8/10 (80%), Positives = 8/10 (80%) Frame = +2 / +2 Query: 833 CGIQRCCTHS 862 CGIQ CTHS Sbjct: 3644 CGIQLSCTHS 3673
>LOC_Os12g32750:12012.t02970:unspliced-genomic disulfide oxidoreductase/ monooxygenase/ oxidoreductase, putative,| expressed Length = 7082 Score = 27.2 bits (53), Expect(2) = 3.1 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 / -1 Query: 73 GGATWQRSKPRSRWQQRQ 126 GGA KPR RW++R+ Sbjct: 320 GGARGSSQKPRGRWRRRR 267 Score = 23.1 bits (44), Expect(2) = 3.1 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +2 / -3 Query: 215 RHPVQAQARRR 247 RHP + QARRR Sbjct: 207 RHPARLQARRR 175
>LOC_Os07g44330:12007.t04073:unspliced-genomic protein kinase, mitochondrial precursor, putative, expressed| Length = 4069 Score = 26.3 bits (51), Expect(2) = 3.3 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +1 / +1 Query: 76 GATWQRSKPRSRWQQR 123 G W+RS+ R RW++R Sbjct: 136 GGGWRRSRWRGRWRRR 183 Score = 24.0 bits (46), Expect(2) = 3.3 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +3 / +2 Query: 9 PLFLSLAAAHPPHPKTLGKQRRRR 80 PL+ ++A PP P++ + RRR Sbjct: 35 PLYKRASSARPPMPRSSIPKSRRR 106
>LOC_Os01g33700:12001.t02935:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5828 Score = 33.1 bits (66), Expect = 3.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -2 / -1 Query: 986 LNSQFAKRQTYVLNSDDASNFPHEV 912 L Q AK Q VL +D++SNFPH + Sbjct: 1016 LKWQLAKGQVPVLRTDESSNFPHTI 942
>LOC_Os01g04870:12001.t00374:unspliced-genomic nucleic acid binding protein, putative, expressed| Length = 4254 Score = 33.1 bits (66), Expect = 3.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 / -2 Query: 917 HVGSLMHHHCLKHMFAFLRIGCLVH 991 H L HHHC H + GCL+H Sbjct: 3893 HNCHLSHHHCYSHACHLIFSGCLIH 3819
>LOC_Os03g05320:12003.t05713:unspliced-genomic expressed protein| Length = 2399 Score = 28.6 bits (56), Expect(2) = 3.5 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 / -2 Query: 925 SHMRWGSSSGFVEIEGYCEEN*VRTTSLY 839 +H R S E G+CE+N V T LY Sbjct: 2218 THYRTSSGKDHKEANGFCEQNDV*TAFLY 2132 Score = 26.3 bits (51), Expect(2) = 3.5 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 / -3 Query: 723 CSLTRCIVHLCLVSDFSSHRGSCRP 649 C L RC + V++ H GSC P Sbjct: 1293 CKLLRC*ITHTTVAEHLIHHGSCIP 1219
>LOC_Os12g37990:12012.t03480:unspliced-genomic hypothetical protein| Length = 780 Score = 33.1 bits (66), Expect = 3.5 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +1 / +2 Query: 55 PSESKGGGATWQRSKPRSRWQQRQ 126 PS S G W+++ P+ RWQ+++ Sbjct: 77 PSSSPSAGGAWRQASPQRRWQRKR 148
>LOC_Os10g19910:12010.t01490:unspliced-genomic expressed protein| Length = 2024 Score = 33.1 bits (66), Expect = 3.5 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -1 / -3 Query: 729 HVCSLTRCIVHLCLVSDFSSHRGSCRPSYHCSQ*PPSISC 610 H + C CL+ +SH G R ++H + PP SC Sbjct: 450 HHGNFLACCTDRCLLLPHASHNGEDRHNHHHASLPPPFSC 331
>LOC_Os06g34950:12006.t03192:unspliced-genomic hypothetical protein| Length = 1412 Score = 33.1 bits (66), Expect = 3.5 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -1 / -2 Query: 729 HVCSLTRCIVHLCLVSDFSSHRGSCRPSYHCSQ*PPSISC 610 H + C CL+ +SH G R ++H + PP SC Sbjct: 262 HHGNFLACCTDRCLLLPHASHNGEDRHNHHHASLPPPFSC 143
>LOC_Os11g12490:12011.t01136:unspliced-genomic transposon protein, putative, unclassified| Length = 6136 Score = 26.7 bits (52), Expect(2) = 4.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 / +3 Query: 30 AAHPPHPKTLGKQRRRRDMAEVEAAL 107 A HPP + G+ RRRR V AA+ Sbjct: 93 ARHPPRQEDPGECRRRRRQPRVLAAV 170 Score = 23.1 bits (44), Expect(2) = 4.3 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = +1 / +2 Query: 91 RSKPRSRWQQR 123 RS PRSRW R Sbjct: 170 RSTPRSRWSPR 202
>LOC_Os09g38090:12009.t03283:unspliced-genomic expressed protein| Length = 3084 Score = 27.2 bits (53), Expect(2) = 4.5 Identities = 8/25 (32%), Positives = 16/25 (64%) Frame = +1 / +2 Query: 55 PSESKGGGATWQRSKPRSRWQQRQK 129 P+ ++ +W+RS R+RW R++ Sbjct: 1901 PAAARPCSRSWRRSSGRTRWSARRR 1975 Score = 22.6 bits (43), Expect(2) = 4.5 Identities = 7/18 (38%), Positives = 12/18 (66%) Frame = +3 / +3 Query: 21 SLAAAHPPHPKTLGKQRR 74 ++ A HPP P+ ++RR Sbjct: 1827 AVQAGHPPRPEAPRRRRR 1880
>LOC_Os03g28040:12003.t02477:unspliced-genomic zinc finger, C3HC4 type family protein, expressed| Length = 546 Score = 32.7 bits (65), Expect = 4.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 / -1 Query: 30 AAHPPHPKTLGKQRRRRDMAEVEAALPVAATTETP 134 A HP P+ ++RRRR + LPV A + P Sbjct: 405 ARHPRRPRPRRRRRRRRSFGHSDGRLPVGAGDDGP 301
>LOC_Os03g38620:12003.t03305:unspliced-genomic hypothetical protein| Length = 3734 Score = 32.7 bits (65), Expect = 4.7 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -1 / -3 Query: 789 YQRRISVKHYTDTFPSCGLHHVCSLTRCIVHLCL 688 Y R + H +P LHH C L +V LCL Sbjct: 1578 YNRLYANSHKPSLYPLARLHHWCGLLSTVVVLCL 1477
>LOC_Os08g24810:12008.t02251:unspliced-genomic hypothetical protein| Length = 1629 Score = 32.2 bits (64), Expect = 6.5 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 / -3 Query: 511 WLSSNCSPIRAMHVSSHMVSRLAFLLDITVH 419 W NC P+R+ + S RL F +VH Sbjct: 1123 WFDENCCPVRSAKICSSFKIRLEFRFKFSVH 1031
>LOC_Os07g36390:12007.t03309:unspliced-genomic CRP1, putative, expressed| Length = 3470 Score = 32.2 bits (64), Expect = 6.5 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +2 / +2 Query: 791 CCLRQFSNLLCRFACGIQRCCTHS 862 CC R + CR AC RCC+ S Sbjct: 344 CCRRSSTRCRCRAACSRTRCCSPS 415
>LOC_Os05g30730:12005.t02672:unspliced-genomic expressed protein| Length = 1431 Score = 32.2 bits (64), Expect = 6.5 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 / +3 Query: 539 DTRDNTTNFLAFIELLSNQSHARFKPH 459 DT+ T F A EL+SNQ H F P+ Sbjct: 435 DTKHTVTKFFASAELISNQLHIGFCPN 515
>LOC_Os05g26170:12005.t02271:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 8126 Score = 26.3 bits (51), Expect(2) = 7.4 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 / -3 Query: 505 SSNCSPIRAMHVSSHMVSRL 446 +S+C PI H SSH + RL Sbjct: 7482 TSSCEPIDEYHKSSHELHRL 7423 Score = 22.6 bits (43), Expect(2) = 7.4 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -3 / -2 Query: 439 LLDITVHLPPFAHSGSSHFGSTPALNK*KSALPTNL 332 +L T + A S H +TP++ +* S+ P+N+ Sbjct: 7447 ILS*TSPIATLA*SALKHLSNTPSIVR**SSSPSNV 7340
>LOC_Os09g07490:12009.t00545:unspliced-genomic expressed protein| Length = 709 Score = 31.8 bits (63), Expect = 8.9 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +3 / -2 Query: 9 PLFLSLAAAHPPHPKTLGKQRRRRDMAEVEAALPVA 116 PL L LAA PP + QRR R VE LP A Sbjct: 174 PLRLDLAAVLPPRAQLRVSQRRERRRRLVECLLPSA 67
>LOC_Os06g49450:12006.t04629:unspliced-genomic expressed protein| Length = 6454 Score = 31.8 bits (63), Expect = 8.9 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 / +1 Query: 463 HMVSRLAFLLDITVHLPPFAHSGSSHF 383 H++ + F L VH P++H+ S+HF Sbjct: 1144 HLILKHMFKLSCVVHCSPWSHAASAHF 1224
>LOC_Os03g59250:12003.t05173:unspliced-genomic expressed protein| Length = 2047 Score = 31.8 bits (63), Expect = 8.9 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 / +3 Query: 902 GGTPPHVGSLMHHHCLKHMFAFLR 973 GG+P + SL HH C+ +F F+R Sbjct: 1497 GGSPALLLSLFHHPCISILFLFIR 1568
>LOC_Os03g48430:12003.t04200:unspliced-genomic 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed| Length = 1181 Score = 31.8 bits (63), Expect = 8.9 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 / -1 Query: 21 SLAAAHPPHPKTLGKQRRRRDMAE 92 ++ AAHPP P L QRRR ++ + Sbjct: 689 AVGAAHPPQPPRLQPQRRREELQD 618
>LOC_Os03g05180:12003.t00391:unspliced-genomic expressed protein| Length = 3365 Score = 31.8 bits (63), Expect = 8.9 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +3 / -2 Query: 27 AAAHPPHPKTLGKQRRRRDMAEVEA 101 A A PP P L +QRRR D E+ A Sbjct: 2683 ALARPPRPPALRRQRRRADQPELGA 2609
>LOC_Os01g29910:12001.t02673:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 10194 Score = 31.8 bits (63), Expect = 8.9 Identities = 15/52 (28%), Positives = 20/52 (38%) Frame = +2 / +2 Query: 845 RCCTHSIFLAISLDFNKPRGGTPPHVGSLMHHHCLKHMFAFLRIGCLVHFCG 1000 RC H + + KP+GG PH+ H+F F L F G Sbjct: 4145 RCPLHHLRRRVKNQCTKPKGGMYPHICFQQFKFLYHHIFEFQNAFRLFEFLG 4300
>LOC_Os07g31060:12007.t02793:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3292 Score = 31.8 bits (63), Expect = 9.0 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +1 / -2 Query: 610 ARNGRRLLTTMIRWSTASTMTREVRNQAEVDDTPCKAAHMMKTAARKSVRVVFHRDSPLI 789 AR+ R + + T+ R + A+ PC++A + AAR++V+ + +PL+ Sbjct: 2877 ARSRRETASRSMPGPTSPAKRRASTSPADESSAPCRSAMVCSAAARRAVKSLSPAAAPLL 2698
>LOC_Os05g15890:12005.t01360:unspliced-genomic ATP binding protein, putative, expressed| Length = 7188 Score = 31.8 bits (63), Expect = 9.0 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 / +3 Query: 712 CKAAHMMKTAARKSVRVVFHRDSPLILLFEAIFQSIMSFCLWHTEMLYA 858 CK + K RK + + R SPL L A+ S FC T ++YA Sbjct: 6204 CKKLILTKIETRKLLAKLSTRISPLCLRIGALIFSCNKFCSLQTGIVYA 6350
>LOC_Os09g37630:12009.t03237:unspliced-genomic Transposable element protein, putative, MuDR| Length = 4068 Score = 27.2 bits (53), Expect(2) = 9.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 / +2 Query: 711 RCIVHLCLVSDFSSHRGSCRPSYHCS 634 RC++ L +V FSSH S +CS Sbjct: 1265 RCVISLSVVFFFSSHNMSNSDHVYCS 1342 Score = 26.7 bits (52), Expect(2) = 9.7 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 / +1 Query: 446 GLPARYHSPFAPIC 405 G PA++H+P PIC Sbjct: 3862 GPPAKFHAPSPPIC 3903 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 423,389,663 Number of extensions: 7003721 Number of successful extensions: 33813 Number of sequences better than 10.0: 37 Length of query: 360 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 310 Effective length of database: 52,799,986 Effective search space: 16367995660 Effective search space used: 16367995660 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)