ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf146h10 |
|---|---|
| Clone Library Name | barley_pub |
>Q9VJ79:PDE11_DROME Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11 - Drosophila| melanogaster (Fruit fly) Length = 1451 Score = 35.4 bits (80), Expect = 0.27 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 15/95 (15%) Frame = +3 Query: 126 QRKVKDACRRDSGNCSRCWDHRQYRCQIR--------------IRSRTLVHN-LCLSQTQ 260 QR+ + + C C DH + Q+R ++R H LC S Sbjct: 1266 QRQTSNQAQTQKQRCKSC-DHSRSGLQVRKTSSLRGAQELDLDSKTRNGTHAALCKSTPV 1324 Query: 261 TRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHS 365 NH +H+ + + +HNH H H H+HS Sbjct: 1325 INNHSHHHNHSHSHNHNH---------HHHHHHHS 1350
>Q62563:SRY_MUSSP Sex-determining region Y protein - Mus spretus (Western wild mouse)| Length = 355 Score = 35.0 bits (79), Expect = 0.35 Identities = 20/90 (22%), Positives = 37/90 (41%) Frame = +3 Query: 258 QTRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQS 437 Q + + +H + Q + H+H+ + Q H H H+H + Q + + Q Sbjct: 195 QQKQQFHDHQQQQQQFHDHHHQQQQQQFHDH-HHHQQQQQQFHDHHQQKQQFHDHHQQQQ 253 Query: 438 RSLCHSHYRDQTRSHCRNQMSKAHIHRYNH 527 + H H + Q + H Q K H ++H Sbjct: 254 QQQFHDHPQQQQQFHDHPQ-QKQQFHDHHH 282
>Q5ZJP9:CCNL1_CHICK Cyclin-L1 - Gallus gallus (Chicken)| Length = 534 Score = 35.0 bits (79), Expect = 0.35 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Frame = +3 Query: 261 TRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSR 440 T + ++HSR+++RS + + T+ S S + + Y +++SR Sbjct: 424 TSSGSKSHSRSRSRSGSPPRQFNHSSTYKSSKMRSYKKSKDYKYSAHKAR-----KSRSR 478 Query: 441 SLCHSHYRDQTRS-HCRNQMSKAHIHRYNHCRIRTRPGDKITHYRGRSH 584 S S R + RS H K+H +R NH R+R ++ +H R H Sbjct: 479 SSSRSRSRSRERSDHSGKYKKKSHYYR-NHRHERSRSYERASHRYDRDH 526
>Q6AYL6:SPT18_RAT Spermatogenesis-associated protein 18 - Rattus norvegicus (Rat)| Length = 568 Score = 33.9 bits (76), Expect = 0.78 Identities = 15/38 (39%), Positives = 26/38 (68%) Frame = +3 Query: 258 QTRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLC 371 ++R+H R+HSR+ +RSH+H + +HS+S +S C Sbjct: 264 RSRSHSRSHSRSHSRSHSH------SNSHSNSRSNSPC 295
>P04929:HRPX_PLALO Histidine-rich glycoprotein precursor - Plasmodium lophurae| Length = 351 Score = 33.1 bits (74), Expect = 1.3 Identities = 16/87 (18%), Positives = 28/87 (32%) Frame = +3 Query: 267 NHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSL 446 +H+ +H A H+H+ + H H H+H + Sbjct: 195 HHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDA 254 Query: 447 CHSHYRDQTRSHCRNQMSKAHIHRYNH 527 H H+ H + AH H ++H Sbjct: 255 HHHHHHHHDAHHHHHHHHDAHHHHHHH 281
>Q9UK58:CCNL1_HUMAN Cyclin-L1 - Homo sapiens (Human)| Length = 526 Score = 32.3 bits (72), Expect = 2.3 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Frame = +3 Query: 129 RKVKDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSH 308 R + A R S SR H R RSR+ ++ +++R+ R+HS + R H Sbjct: 387 RNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYS-----SRSRSRSRSHSESPRRHH 441 Query: 309 NH---YLSLFRTQ---THSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCHSHYRDQ 470 NH +L T+ S+ H H + ++ S + + H R++ Sbjct: 442 NHGSPHLKAKHTRDDLKSSNRHGHKRKKSRSRSQSKSRDHSDAAKKHRHERGHHRDRRER 501 Query: 471 TRSHCRNQMSKAH 509 +RS R+ SK H Sbjct: 502 SRSFERSHKSKHH 514
>Q5UPJ3:YL116_MIMIV Uncharacterized protein L116 - Mimivirus| Length = 563 Score = 32.0 bits (71), Expect = 3.0 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 264 RNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHS 365 R+HYR+H+++ RSH R ++ SHY S Sbjct: 190 RSHYRSHNKSTERSHYRSTERSRYRSPERSHYRS 223
>Q8VE97:SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 - Mus musculus (Mouse)| Length = 489 Score = 32.0 bits (71), Expect = 3.0 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Frame = +3 Query: 276 RNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCHS 455 R+HSR+++RS + S R+ + SH S R++SRS HS Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKS--------------------RSRSRSGSHS 228 Query: 456 HYRDQTRSHCRNQMSKAHIH---RYNHCRIRTRPGDK 557 + ++RS R++ K + N R R+R DK Sbjct: 229 RSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDK 265 Score = 30.4 bits (67), Expect = 8.7 Identities = 21/96 (21%), Positives = 43/96 (44%) Frame = +3 Query: 210 RIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYS 389 R SR+ H+ S+++ R+ S + SH+ S R+ +HS S S + ++ S Sbjct: 183 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRS 242 Query: 390 XXXXXXXXXXXXRAQSRSLCHSHYRDQTRSHCRNQM 497 +++SRS R +++ H +++ Sbjct: 243 KKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKL 278
>Q5F2E7:NUFP2_MOUSE Nuclear fragile X mental retardation-interacting protein 2 - Mus| musculus (Mouse) Length = 692 Score = 32.0 bits (71), Expect = 3.0 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Frame = +3 Query: 252 QTQTRNHYRNH-------SRAQTRSHNHYLSLFRTQTHSHSHYH 362 Q Q ++H+ +H + Q +SH+H+ F +H+H H+H Sbjct: 7 QPQPQHHHSHHHPHHHPQQQQQQQSHHHHHYYFYNHSHNHHHHH 50
>Q9R0U0:FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 - Mus musculus| (Mouse) Length = 262 Score = 32.0 bits (71), Expect = 3.0 Identities = 25/97 (25%), Positives = 45/97 (46%) Frame = +3 Query: 183 DHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYH 362 D+ +++ + R SR+ ++ S++Q + + SR+++ SH ++T S +HY Sbjct: 161 DNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGT--SKTDSKTHYK 218 Query: 363 SLCRIQTYSXXXXXXXXXXXXRAQSRSLCHSHYRDQT 473 S R + S R+QSRS S R T Sbjct: 219 SGSRYEKESRKKEPPRSKSQSRSQSRSRSKSRSRSWT 255
>O75494:FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 - Homo sapiens| (Human) Length = 262 Score = 32.0 bits (71), Expect = 3.0 Identities = 25/97 (25%), Positives = 45/97 (46%) Frame = +3 Query: 183 DHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYH 362 D+ +++ + R SR+ ++ S++Q + + SR+++ SH ++T S +HY Sbjct: 161 DNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGT--SKTDSKTHYK 218 Query: 363 SLCRIQTYSXXXXXXXXXXXXRAQSRSLCHSHYRDQT 473 S R + S R+QSRS S R T Sbjct: 219 SGSRYEKESRKKEPPRSKSQSRSQSRSRSKSRSRSWT 255
>Q5R8W6:CROP_PONPY Cisplatin resistance-associated overexpressed protein - Pongo| pygmaeus (Orangutan) Length = 432 Score = 31.6 bits (70), Expect = 3.9 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = +3 Query: 138 KDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHY 317 + + R CSR DH++ R + R RSR+ S ++ +R+ SR + RS + Sbjct: 298 RHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRD 357 Query: 318 LSLFRTQTHS 347 ++ ++ S Sbjct: 358 RKSYKHRSKS 367
>Q5SUF2:CROP_MOUSE Cisplatin resistance-associated overexpressed protein - Mus| musculus (Mouse) Length = 432 Score = 31.6 bits (70), Expect = 3.9 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = +3 Query: 138 KDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHY 317 + + R CSR DH++ R + R RSR+ S ++ +R+ SR + RS + Sbjct: 298 RHSSRTSDRRCSRSRDHKRSRSRDRRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRD 357 Query: 318 LSLFRTQTHS 347 ++ ++ S Sbjct: 358 RKSYKHRSKS 367
>O95232:CROP_HUMAN Cisplatin resistance-associated overexpressed protein - Homo| sapiens (Human) Length = 432 Score = 31.6 bits (70), Expect = 3.9 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = +3 Query: 138 KDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHY 317 + + R CSR DH++ R + R RSR+ S ++ +R+ SR + RS + Sbjct: 298 RHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRD 357 Query: 318 LSLFRTQTHS 347 ++ ++ S Sbjct: 358 RKSYKHRSKS 367
>Q3SX41:CROP_BOVIN Cisplatin resistance-associated overexpressed protein - Bos taurus| (Bovine) Length = 432 Score = 31.6 bits (70), Expect = 3.9 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = +3 Query: 138 KDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSHNHY 317 + + R CSR DH++ R + R RSR+ S ++ +R+ SR + RS + Sbjct: 298 RHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRD 357 Query: 318 LSLFRTQTHS 347 ++ ++ S Sbjct: 358 RKSYKHRSKS 367
>P38041:BOB1_YEAST Protein BOB1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 980 Score = 31.6 bits (70), Expect = 3.9 Identities = 20/83 (24%), Positives = 35/83 (42%) Frame = +3 Query: 279 NHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCHSH 458 +HSR+Q+ S++H R+Q++SHS HSL + A S + S+ Sbjct: 620 SHSRSQSNSYSHA----RSQSYSHSRKHSLVTSPLKTSLSPINSKSNIALAHSETPTSSN 675 Query: 459 YRDQTRSHCRNQMSKAHIHRYNH 527 ++ + H H+ H Sbjct: 676 NKEAVSQPSEGKHKHKHKHKSKH 698
>P97868:RBBP6_MOUSE Retinoblastoma-binding protein 6 - Mus musculus (Mouse)| Length = 1790 Score = 31.2 bits (69), Expect = 5.1 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 9/112 (8%) Frame = +3 Query: 273 YRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCH 452 Y+ + + RS + S + ++S S Y TYS R+ SRS Sbjct: 673 YKKIQKERRRSFSRSKSPYSGSSYSRSSY-------TYSKSRSGSTRS---RSYSRSFSR 722 Query: 453 SHYRDQTRS---------HCRNQMSKAHIHRYNHCRIRTRPGDKITHYRGRS 581 SH R +RS RN S++ H Y+ R R+ P + H R RS Sbjct: 723 SHSRSYSRSPPYPRRGRGKSRNYRSRSRSHGYHRSRSRSPPYRRY-HSRSRS 773
>Q7Z6E9:RBBP6_HUMAN Retinoblastoma-binding protein 6 - Homo sapiens (Human)| Length = 1792 Score = 31.2 bits (69), Expect = 5.1 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 9/112 (8%) Frame = +3 Query: 273 YRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCH 452 Y+ + + RS + S + ++S S Y TYS R+ SRS Sbjct: 672 YKKIQKERRRSFSRSKSPYSGSSYSRSSY-------TYSKSRSGSTRS---RSYSRSFSR 721 Query: 453 SHYRDQTRS---------HCRNQMSKAHIHRYNHCRIRTRPGDKITHYRGRS 581 SH R +RS RN S++ H Y+ R R+ P + H R RS Sbjct: 722 SHSRSYSRSPPYPRRGRGKSRNYRSRSRSHGYHRSRSRSPPYRRY-HSRSRS 772
>Q62565:SRY_MUSSI Sex-determining region Y protein - Mus spicilegus (Steppe mouse)| Length = 311 Score = 30.8 bits (68), Expect = 6.6 Identities = 17/90 (18%), Positives = 32/90 (35%) Frame = +3 Query: 252 QTQTRNHYRNHSRAQTRSHNHYLSLFRTQTHSHSHYHSLCRIQTYSXXXXXXXXXXXXRA 431 Q Q + + NH + + + H+H+ + Q H H + Q + Sbjct: 144 QQQQQQQFHNHHQQKQQFHDHHQQQQQQQFHDHHQQ----KQQFHDHQQQQQQFHDHHHH 199 Query: 432 QSRSLCHSHYRDQTRSHCRNQMSKAHIHRY 521 Q + H H + Q + H + + H Y Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDY 229
>Q9R1Q2:CCNL1_RAT Cyclin-L1 - Rattus norvegicus (Rat)| Length = 527 Score = 30.8 bits (68), Expect = 6.6 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Frame = +3 Query: 129 RKVKDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSH 308 R + A R S SR H R RSR+ ++ +++R+ R+HS + R H Sbjct: 388 RNSRSASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYS-----SRSRSRSRSHSESPRRHH 442 Query: 309 NH---YLSLFRTQ---THSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCHSHYRDQ 470 NH +L T+ S+ H H + ++ S + + H R++ Sbjct: 443 NHGSPHLKAKHTREDLKSSNRHGHKRKKSRSRSQSKTRDHSDVTKKHRHERGHHRDRRER 502 Query: 471 TRSHCRNQMSKAH 509 +RS R+ K H Sbjct: 503 SRSFERSHKGKHH 515
>Q9ES18:FOXJ2_MOUSE Forkhead box protein J2 - Mus musculus (Mouse)| Length = 565 Score = 30.8 bits (68), Expect = 6.7 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 512 PQVQPLPDSNTPGRQNNALQGPQPLGAASTLHS 610 PQ QP P P +Q QGP +G A LH+ Sbjct: 299 PQPQPPPQQPQPQQQQAPTQGPSNVGGAPPLHT 331
>Q52KE7:CCNL1_MOUSE Cyclin-L1 - Mus musculus (Mouse)| Length = 532 Score = 30.4 bits (67), Expect = 8.7 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Frame = +3 Query: 129 RKVKDACRRDSGNCSRCWDHRQYRCQIRIRSRTLVHNLCLSQTQTRNHYRNHSRAQTRSH 308 R + A R S SR H R RSR+ ++ +++R+ R+HS + R H Sbjct: 393 RTSRSASRSRSRTRSRSRSHSPRRHYNNRRSRSGTYS-----SRSRSRSRSHSESPRRHH 447 Query: 309 NH---YLSLFRTQ---THSHSHYHSLCRIQTYSXXXXXXXXXXXXRAQSRSLCHSHYRDQ 470 NH +L T+ S+ H H + ++ S + + H R++ Sbjct: 448 NHGSPHLKAKHTREDLKSSNRHGHKRKKSRSRSQSKTRDHSDVTKKHRHERGHHRDRRER 507 Query: 471 TRSHCRNQMSKAH 509 +RS R+ K H Sbjct: 508 SRSFERSHKGKHH 520
>P46599:STE7_CANAL Serine/threonine-protein kinase STE7 homolog - Candida albicans| (Yeast) Length = 589 Score = 30.4 bits (67), Expect = 8.7 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 118 NDNDEEDDAYETGGRVAARRHGSH 47 +D D+EDDAY G +AA R+G + Sbjct: 458 DDEDDEDDAYVRQGSIAAERNGQN 481 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 110,425,329 Number of extensions: 2222372 Number of successful extensions: 7574 Number of sequences better than 10.0: 23 Number of HSP's gapped: 7413 Number of HSP's successfully gapped: 24 Length of query: 271 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 160 Effective length of database: 70,239,694 Effective search space: 11238351040 Effective search space used: 11238351040 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
