>LOC_Os03g19870:12003.t01749:unspliced-genomic XPA-binding protein 1, putative, expressed|
Length = 6363
Score = 221 bits (478), Expect(8) = e-155
Identities = 92/98 (93%), Positives = 98/98 (100%)
Frame = +2 / +1
Query: 614 EVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTNP 793
+VISVIE+RADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRST+P
Sbjct: 1684 QVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSTSP 1863
Query: 794 VTFMSNMMYACSILYKTRLPLVLTFNKVDVAKHEFALE 907
VTFMSNM+YACSILYKTRLP++LTFNKVDVAKHEFALE
Sbjct: 1864 VTFMSNMLYACSILYKTRLPMILTFNKVDVAKHEFALE 1977
Score = 144 bits (308), Expect(8) = e-155
Identities = 59/61 (96%), Positives = 61/61 (100%)
Frame = +2 / +2
Query: 437 SANMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGLGPNGGILTSLNLFSTKFDE 616
++NMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGLGPNGGILTSLNLFSTKFDE
Sbjct: 629 ASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGLGPNGGILTSLNLFSTKFDE 808
Query: 617 V 619
V
Sbjct: 809 V 811
Score = 103 bits (219), Expect(8) = e-155
Identities = 44/73 (60%), Positives = 51/73 (69%)
Frame = +3 / +3
Query: 903 LSGCKTLKHFRQLWILTHRTHLHLPGVSLLCWTNSTITYALLEYQRYLALELMHFLKL*K 1082
+SG KTL+ FR WILTH T LHLP SLL W + T LLEY YLALE +HFLKL K
Sbjct: 2214 ISGWKTLRRFRPPWILTHHTPLHLPEASLLSWMSFTKICGLLEYLPYLALESIHFLKLLK 2393
Query: 1083 QALMNTWRLTGLI 1121
Q NTWR+TG++
Sbjct: 2394 QVPKNTWRITGVL 2432
Score = 83.5 bits (176), Expect(8) = e-155
Identities = 41/72 (56%), Positives = 49/72 (68%)
Frame = +3 / +1
Query: 1110 TGLILTSGLLKRRD*KLSVGMRTWKD*GEIWRSPKDKLWCSALV*RTKPLPQK*WGTLMX 1289
+GLILT GLLK+R *+LSVG RTWK E W++ KD+L CSALV*RTK + + *W LM
Sbjct: 2512 SGLILTRGLLKKRG*RLSVGRRTWKGCKETWKTLKDRLLCSALV*RTKIVLRI*WMMLMR 2691
Query: 1290 XXXXXXXXISGF 1325
ISGF
Sbjct: 2692 RKRRRH*KISGF 2727
Score = 66.1 bits (138), Expect(8) = e-155
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2 / +2
Query: 296 LADSIGSLSIGPGRTIFKKKPVIILVIGMAGT 391
LADSIGSLSIGP RT FKKKPVII+VIGMAGT
Sbjct: 356 LADSIGSLSIGPERTNFKKKPVIIIVIGMAGT 451
Score = 45.5 bits (93), Expect(8) = e-155
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2 / +2
Query: 386 GTGKTTFMHRLVCHMQAS 439
GTGKTTFMHRLVCH QAS
Sbjct: 581 GTGKTTFMHRLVCHTQAS 634
Score = 24.9 bits (48), Expect(8) = e-155
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1 / +2
Query: 1438 PGPELCLFPGYYSGNEMLSI 1497
P C FPG +GNE+++I
Sbjct: 5885 PSHAWCFFPGD*NGNEIVNI 5944
Score = 24.4 bits (47), Expect(8) = e-155
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 140 PPEPPMDIDSELSA 181
P PPMD+DS+ +A
Sbjct: 141 PAPPPMDVDSDPAA 182
Score = 185 bits (399), Expect(7) = e-143
Identities = 86/97 (88%), Positives = 87/97 (89%)
Frame = -1 / -2
Query: 906 SRANSCLATSTLLNVSTRGKRVL*RILHAYIMLLIKVTGFVDLGVSTTYATTVGNVDAKA 727
SRANSCLATSTLLNV GKRVL RIL A MLL+KVTG VDLGVSTTYATTVGNVDAKA
Sbjct: 1976 SRANSCLATSTLLNVRIIGKRVLYRILQA*SMLLMKVTGLVDLGVSTTYATTVGNVDAKA 1797
Query: 726 SVMIAPEADQVKISICPGVSTST*SSWSARFSITDIT 616
SVMIAPEADQVKISICPGVST T*SSWSAR SITDIT
Sbjct: 1796 SVMIAPEADQVKISICPGVSTRT*SSWSARLSITDIT 1686
Score = 126 bits (270), Expect(7) = e-143
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = -1 / -1
Query: 1104 SMYSLALASIASKNASTPVPDTADTPTERRLL*NSSSTRERLRVNEDEYDESESKAV*NA 925
SMYSLALASIASKN TP PDTADTPT+RR L*NSS TRERLRVN +EYDESESKAV*NA
Sbjct: 2415 SMYSLALASIASKNELTPAPDTADTPTDRRFL*NSSRTRERLRVNVEEYDESESKAV*NA 2236
Query: 924 SKSCIH 907
SKS IH
Sbjct: 2235 SKSSIH 2218
Score = 123 bits (263), Expect(7) = e-143
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = -1 / -1
Query: 618 TSSNLVENRLSEVRMPPLGPSPYSFITSL*RTVSRISMLAPNGSVITAGSRLST*PLMF 442
TSSNLVENRL EVR+PPLGP PYSFITSL RTVSRISMLAPNGSVITAGSRLST*PLMF
Sbjct: 810 TSSNLVENRLREVRIPPLGPRPYSFITSLYRTVSRISMLAPNGSVITAGSRLST*PLMF 634
Score = 90.4 bits (191), Expect(7) = e-143
Identities = 43/71 (60%), Positives = 48/71 (67%)
Frame = -3 / -2
Query: 1324 NPEILQRLLFFLLISVPHHFWGRGFVLQTSAEHHSLSFGLLHISPQSFHVLIPTXXXXXX 1145
NPEI L FLLIS+ HH FVLQTSAEH+SLSF + H+S Q FHVL+PT
Sbjct: 2726 NPEIF*CRLLFLLISIIHHIRSTIFVLQTSAEHNSLSFRVFHVSLQPFHVLLPTLSL*PL 2547
Query: 1144 XXSNPLVKISP 1112
SNPLVKISP
Sbjct: 2546 FFSNPLVKISP 2514
Score = 67.0 bits (140), Expect(7) = e-143
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = -3 / -3
Query: 385 GHADDKDDHRLFLENGPPRADR*TPDGVRKLVAIPLPLPFLLSR 254
GHADD DDHRL LE G RAD PDGVR+L+A+PLPL L R
Sbjct: 445 GHADDDDDHRLLLEIGALRADGEAPDGVRELLALPLPLRVSLHR 314
Score = 33.6 bits (67), Expect(7) = e-143
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1 / -1
Query: 438 DACI*HTRRCMKVVFPVP 385
+A + HT RC+KVVFPVP
Sbjct: 633 EAWVWHTSRCIKVVFPVP 580
Score = 25.4 bits (49), Expect(7) = e-143
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2 / -1
Query: 1508 PPSDIDSISFPL**PGNKHNS 1446
P I +ISFP * PG KH +
Sbjct: 5955 PTDMILTISFPF*SPGKKHQA 5893
Score = 140 bits (300), Expect(6) = e-102
Identities = 60/98 (61%), Positives = 70/98 (71%)
Frame = -3 / -1
Query: 907 LKSKLVLGYINLIKCQHQRQTSLVEDTARVHHVAHKGHRVCRPGGVNHICNNCWKC*CKX 728
LKSKL+LG INLIKCQ+ R LV++TA + HVAH+ +R GGVN+IC+NCWKC CK
Sbjct: 1977 LKSKLMLGNINLIKCQNHR*AGLVQNTAGIKHVAHESNRAR*SGGVNNICDNCWKCRCKS 1798
Query: 727 XXXXXXXXXXSKDFNLPWGVHQHIIQLVCSLFNNRYNL 614
S+DFNLPW VHQ IIQLV S FNNRYNL
Sbjct: 1797 FCYDSS*SRPSEDFNLPWRVHQDIIQLVGSSFNNRYNL 1684
Score = 100 bits (214), Expect(6) = e-102
Identities = 40/58 (68%), Positives = 41/58 (70%)
Frame = -2 / -2
Query: 617 PRQTWLRTG*VR*ECHHWDQVRTLSSPPCNARYRGYQCWLRMAVSSPQGQG*AHNPSC 444
PRQTW R G* R* HW Q T SSPPC RY GY CW + A SSPQGQG*AHNPSC
Sbjct: 809 PRQTWWRIG*ER*GYRHWGQDHTPSSPPCTERYHGYLCWPQTAASSPQGQG*AHNPSC 636
Score = 89.0 bits (188), Expect(6) = e-102
Identities = 43/71 (60%), Positives = 48/71 (67%)
Frame = -3 / -3
Query: 1117 SPVSLHVFISACFYSFKKCINSSARYR*YSNRA*VIVEFVQHKRETPGK*R*VR*VRIQS 938
+PV LHVF CF SFKK I+SSARY YSNR + V+ +Q KRE GK R V *VRIQ
Sbjct: 2428 TPVILHVFFGTCFNSFKK*IDSSARYGRYSNRPQIFVKLIQDKREASGKCRGV**VRIQG 2249
Query: 937 CLKCFKVLHPL 905
LK KV HPL
Sbjct: 2248 GLKRLKVFHPL 2216
Score = 78.5 bits (165), Expect(6) = e-102
Identities = 40/74 (54%), Positives = 45/74 (60%)
Frame = -2 / -1
Query: 1328 RKS*NXXXXXXXXXXXXXPSFLGQGFCPSNQC*APQFVLWTSPYLSSIFPCSHSYAQLLV 1149
+KS*N PS+ FCPSNQC*A Q VL + P L + FPCS SYAQ L
Sbjct: 2730 QKS*NLLMPPPLPPHQHHPSYP*HDFCPSNQC*AQQSVL*SFPCLFATFPCSPSYAQPLT 2551
Query: 1148 SPFQQSACQDQPCK 1107
S FQQS+CQDQP K
Sbjct: 2550 SLFQQSSCQDQP*K 2509
Score = 60.6 bits (126), Expect(6) = e-102
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -1 / -1
Query: 390 VPAMPMTRMITGFFLKMVRPGPIDKLPME 304
VPAMPMT MITGFFLK+VR GP+++LPME
Sbjct: 450 VPAMPMTMMITGFFLKLVRSGPMERLPME 364
Score = 24.9 bits (48), Expect(6) = e-102
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / -3
Query: 1488 HFISTVITWKQT 1453
+FIS +ITWK+T
Sbjct: 5935 NFISVLITWKET 5900
Score = 104 bits (222), Expect(7) = e-100
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = +1 / +1
Query: 442 EHEGLCAQP*PCGDDTAIRSQH*YPRYRALQGGDERVRTWSQWWHSYLTQPVLNQV*RGY 621
+HEGLCAQP*PCGDD A+ QH YP YR++QGGDE V +W QW + +L+QP+L+QV*RG
Sbjct: 634 KHEGLCAQP*PCGDDAAVWGQHRYP*YRSVQGGDEGVWSWPQWRYPHLSQPILHQV*RGV 813
Query: 622 I 624
+
Sbjct: 814 L 816
Score = 95.9 bits (203), Expect(7) = e-100
Identities = 42/69 (60%), Positives = 50/69 (72%)
Frame = +1 / +1
Query: 907 VDARL*SISDSFGF*LIVLIFIYPESLSCAGRILQ*PTLCWSISGIWHWS*CIF*SYRSK 1086
VD RL* +SD GF*LI+L++IYP+ LSC G +LQ +CWSI IW WS IF*SY SK
Sbjct: 2218 VDGRL*GVSDRLGF*LIILLYIYPKPLSCPG*VLQKSAVCWSICRIWRWSQFIF*SY*SK 2397
Query: 1087 R**IHGDLQ 1113
IHG+LQ
Sbjct: 2398 CQRIHGELQ 2424
Score = 80.8 bits (170), Expect(7) = e-100
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1 / +2
Query: 1111 QG*S*QADC*KGETRS*A*E*EHGKIEERYGEVQRTNCGAQHWFEGQNPC 1260
QG*S*Q DC*K E R *A*E EHGK+ +R+G++ RT+C AQHWFEGQ C
Sbjct: 2513 QG*S*QEDC*KREVRG*A*EGEHGKVAKRHGKL*RTDCCAQHWFEGQKSC 2662
Score = 79.9 bits (168), Expect(7) = e-100
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +1 / +3
Query: 616 GYICY*KASRPAGLCAGGHPRAD*NLYLVGFRSYH 720
GYICY*K SRPAGLC GGH RAD*NL+LVGFRSYH
Sbjct: 1686 GYICY*KTSRPAGLCPGGHARAD*NLHLVGFRSYH 1790
Score = 61.6 bits (128), Expect(7) = e-100
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +1 / +3
Query: 769 *HPQVDKPCDLYEQHDVRVQYPLQDSFASGADI**G*CSQARVCS* 906
*HPQ+++PC +EQH + +QY +QD +DI**G*C QA VCS*
Sbjct: 1839 *HPQINEPCYFHEQHALCLQYSVQDPLTDDSDI**G*CCQA*VCS* 1976
Score = 57.0 bits (118), Expect(7) = e-100
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1 / +1
Query: 295 ACGLHREFIYRPGADHFQEKAGDHPCHRHGR 387
A GLHRE ++RPGA FQE+AGDH HRHGR
Sbjct: 355 ARGLHREPLHRPGAHQFQEEAGDHHRHRHGR 447
Score = 28.6 bits (56), Expect(7) = e-100
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 385 RDGEDHLHAPSGVSYAG 435
RDGED+ +AP+G+ + G
Sbjct: 580 RDGEDNFYAPTGMPHPG 630
Score = 91.3 bits (193), Expect(5) = 8e-52
Identities = 39/63 (61%), Positives = 48/63 (76%)
Frame = -3 / -3
Query: 631 NNRYNLVKLG*EQVE*GKNATIGTKSVLFHHLLVTHGIADINVGSEWQCHHRRVKVEHIT 452
+ + +LVKLG E VE G++ IG K++L HHLLV +GI DI VG + Q HHRRVKVEHIT
Sbjct: 823 DRKAHLVKLGGE*VERGEDTAIGAKTILLHHLLVPNGITDIYVGPKRQRHHRRVKVEHIT 644
Query: 451 PHV 443
PHV
Sbjct: 643 PHV 635
Score = 74.8 bits (157), Expect(5) = 8e-52
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = -2 / -3
Query: 905 QEQTRAWLHQPY*MSAPEANESCRGYCTRTSCCS*RSQGLSTWGCQPH 762
QEQT AW HQPY*MS + SC YC +CCS*+ QG WGCQ H
Sbjct: 1975 QEQTHAWQHQPY*MSESSVSGSCTEYCRHKACCS*K*QGSLIWGCQQH 1832
Score = 48.3 bits (99), Expect(5) = 8e-52
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1 / -3
Query: 1260 AGVLSFKPVLSTTVCPLDFSISLLN 1186
A LSFKPVLSTTVCPL+FS+SL N
Sbjct: 2662 ARFLSFKPVLSTTVCPLEFSMSLCN 2588
Score = 46.9 bits (96), Expect(5) = 8e-52
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = -2 / -2
Query: 1013 YCRIRPAQERDSG*MKMSTMSQNPKLSEMLQSLASTQE 900
+C+ P QER G*M S MSQNP+ SE QSL ST +
Sbjct: 2324 FCKTHPGQERGFG*M*RSMMSQNPRRSETPQSLPSTDK 2211
Score = 39.6 bits (80), Expect(5) = 8e-52
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 365 *SPAFS*KWSAPGR*INSRWSPQA 294
*SPA S* W APGR SRWSP+A
Sbjct: 425 *SPASS*NWCAPGRWRGSRWSPRA 354
Score = 74.8 bits (157), Expect(7) = 6e-50
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = +3 / +3
Query: 441 RT*GVMCSTLTLR**HCHSEPTLISAIPCVTRR**KSTDLVPMVAFLPHSTCSQPSLTR 617
+T*GVMCSTLTLR** C PT IS IP TRR**+S L PM P ST S PSLTR
Sbjct: 633 QT*GVMCSTLTLR**RCRLGPT*ISVIPFGTRR**RSMVLAPMAVSSPLSTYSPPSLTR 809
Score = 70.7 bits (148), Expect(7) = 6e-50
Identities = 29/35 (82%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 609 LTRLYLLLKSEQTSWIMCWWTPQGRLKSLLGRLQE 713
L RLYLLLK E TSWIM WWT QGRLKS LGRLQE
Sbjct: 1679 LYRLYLLLKDEPTSWIMSWWTRQGRLKSSLGRLQE 1783
Score = 51.0 bits (105), Expect(7) = 6e-50
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +2 / +2
Query: 998 DEFYNNLRXXXXXXXXXXXXDAFFEAIEASANEYMETYR 1114
DEFY NLR ++FFEAIEASA EYME YR
Sbjct: 2309 DEFYKNLRSVGVSAVSGAGVNSFFEAIEASAKEYMENYR 2425
Score = 44.1 bits (90), Expect(7) = 6e-50
Identities = 22/40 (55%), Positives = 23/40 (57%)
Frame = +2 / +3
Query: 1208 SKGQTVVLSTGLKDKTPAPEMMGXXXXXXXXXXXXXFRIS 1327
SKGQTVVLSTGLKDK A +MM FRIS
Sbjct: 2610 SKGQTVVLSTGLKDKNRATDMMDDADEEEEEAALEDFRIS 2729
Score = 35.4 bits (71), Expect(7) = 6e-50
Identities = 24/45 (53%), Positives = 26/45 (57%)
Frame = +3 / +2
Query: 771 TPPGRQTL*PL*AT*CTRAVSSTRLVCLWC*HLIRLM*PSTSLLL 905
TPP ++ L *AT AV TR *HLIRLM PS SLLL
Sbjct: 1841 TPPDQRALLLS*ATCFMPAVFCTRPAYR*F*HLIRLMLPSMSLLL 1975
Score = 30.9 bits (61), Expect(7) = 6e-50
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 905 EWMQDFEAFQTA 940
+WM+DFEAFQTA
Sbjct: 2216 QWMEDFEAFQTA 2251
Score = 28.1 bits (55), Expect(7) = 6e-50
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3 / +3
Query: 288 ATSLRTPSGVYLSARGGPFXXXXXXXXXXXAWP 386
A S RTPSG SAR P AWP
Sbjct: 348 ARSSRTPSGASPSARSAPISRRSR*SSSSSAWP 446
Score = 66.1 bits (138), Expect = 7e-10
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = -2 / -3
Query: 704 PTK*RFQSALGCPPAHNPAGLLAFQ*QI*PRQTWLR 597
PTK*RFQSAL CPP HNPAG L FQ*QI*P +T +R
Sbjct: 1774 PTK*RFQSALACPPGHNPAGRLVFQ*QI*PVKTIIR 1667
>LOC_Os03g55940:12003.t04853:unspliced-genomic hypothetical protein|
Length = 615
Score = 29.0 bits (57), Expect(2) = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2 / -3
Query: 113 SRACSRLPAPPEPPMDIDSELSAESNKP 196
+R SR+P PP PP+ + + S +P
Sbjct: 274 TRPTSRMPPPPPPPLRLQAPPSPPPRRP 191
Score = 24.0 bits (46), Expect(2) = 8.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1 / -1
Query: 364 HPCHRHGRDGEDHLHAPSG 420
HP HRHGR L +G
Sbjct: 126 HPGHRHGRHHRQLLRRRTG 70
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 644,327,364
Number of extensions: 10286654
Number of successful extensions: 48246
Number of sequences better than 10.0: 29
Length of query: 564
Length of database: 55,613,886
Length adjustment: 51
Effective length of query: 513
Effective length of database: 52,743,708
Effective search space: 27057522204
Effective search space used: 27057522204
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)