ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf141j02 |
|---|---|
| Clone Library Name | barley_pub |
>Q91W78:CP057_MOUSE UPF0406 protein C16orf57 homolog - Mus musculus (Mouse)| Length = 267 Score = 107 bits (266), Expect = 1e-22 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCK 514 G RIR+FPH GN+A H+YIP + R L ++ R VP Sbjct: 70 GGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVP---------------- 113 Query: 515 DEQKLEKVLLGREFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDD 694 +++L EFHVSL ++V ++ H I V +L+ + S QR++ N+ + + N + Sbjct: 114 ------RLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQE 167 Query: 695 STRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSKLK- 871 TR+F+ LEV+ +G + + VD + L FY++P HISLAW +GD S +L+ Sbjct: 168 KTRTFIGLEVS-SGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEG 226 Query: 872 QATKE----IEKFENSINLSKNYNLRCNFSRILCKVGKKVYDI 988 Q +E +++FE+S L LR +++ CK G K + + Sbjct: 227 QCLQELQEIVDEFEDSEML-----LRVLANQVRCKSGNKFFSM 264
>Q5I0I5:CP057_RAT UPF0406 protein C16orf57 homolog - Rattus norvegicus (Rat)| Length = 267 Score = 101 bits (252), Expect = 5e-21 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 5/223 (2%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCK 514 G RIR+FPH GN+A H+YIP + L +++ R P L ++ Sbjct: 70 GGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRLVQME---------- 119 Query: 515 DEQKLEKVLLGREFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDD 694 EFH+SL ++V ++ H I V +L+ + S QR++ N+ + + N + Sbjct: 120 ------------EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQE 167 Query: 695 STRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSKLKQ 874 TR+F+ LEV+ +G + + VD V + L FY++P H+SLAW +GD +L+ Sbjct: 168 KTRTFIGLEVS-SGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEG 226 Query: 875 ATKE-----IEKFENSINLSKNYNLRCNFSRILCKVGKKVYDI 988 ++ +++FE+S L LR ++ CK G K + + Sbjct: 227 QCQQELQEIVDEFEDSEML-----LRVLAEQVRCKSGNKFFSM 264
>Q6DEF6:CP057_DANRE UPF0406 protein C16orf57 homolog - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 276 Score = 97.8 bits (242), Expect = 7e-20 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCK 514 G R+RSF H GN+A +V+ P ++ + V+ ++ + A D +SE Sbjct: 79 GGRLRSFQHERGNWATYVFFP----YDPEEAFLEVLNKMMAAAE---AHDIPLTVSE--- 128 Query: 515 DEQKLEKVLLGREFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDD 694 EFH+SL +TV ++ H I V +R Q+++ K + + N + Sbjct: 129 ------------EFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAE 176 Query: 695 STRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSKLKQ 874 TR+FL +EV+ TG P + + +VDE + L FY++P HISLAW +GD + +LK+ Sbjct: 177 KTRTFLGMEVS-TGTPHLLELSKIVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKK 235 Query: 875 ATKEIEKFENSINLSKN--YNLRCNFSRILCKVGKKVY 982 A + + + I+ ++ ++ R N + + CK G KV+ Sbjct: 236 AC--LLELQGLIDAHEDGPFHARLNCNELRCKTGNKVF 271
>Q7ZYI9:CP057_XENLA UPF0406 protein C16orf57 homolog - Xenopus laevis (African clawed| frog) Length = 250 Score = 97.1 bits (240), Expect = 1e-19 Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Frame = +2 Query: 311 VDYSTIPQGSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDAD 490 +D +T +G RIRSF H GN+A +VYIP F ++ L+ +L +V A+ Sbjct: 46 LDENTKHEG-RIRSFKHERGNWATYVYIP----FQPQEEFL-------DLLDELVSVAAE 93 Query: 491 YALSELCKDEQKLEKVLLGR--EFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDL 664 VLL + EFH+S +TV ++ H I+ V L+ K R+ Sbjct: 94 NG-------------VLLTKMSEFHISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIA 140 Query: 665 NKWEHFVNDDSTRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWA 844 + + + N + TR+FL LEV+ G+ + + + VD + L FY+ P H+SLAW Sbjct: 141 ERIKVYTNQEKTRTFLGLEVS-VGMEHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWC 199 Query: 845 LGDVSSKLK-----QATKEIEKFENSINLSKNYNLRCNFSRILCKVGKKVYDI 988 +GD KLK + K I++FE+S L+ R N I CK G K + I Sbjct: 200 VGDKYEKLKGSCLLELQKVIDRFEDSDTLT-----RFNAEEIRCKAGNKTFCI 247
>Q9BQ65:CP057_HUMAN UPF0406 protein C16orf57 - Homo sapiens (Human)| Length = 265 Score = 94.0 bits (232), Expect = 1e-18 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 1/219 (0%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCK 514 G R+R+FPH GN+A HVY+P L +++ + VP L + Sbjct: 68 GGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRM----------- 116 Query: 515 DEQKLEKVLLGREFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDD 694 + FH+SL ++V ++ H I V L+ + S R++ N+ + + N + Sbjct: 117 -----------KVFHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQE 165 Query: 695 STRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSKLK- 871 TR+F+ LEVT +G + + VD V L FY++P H+SLAW +GD +L+ Sbjct: 166 KTRTFIGLEVT-SGHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEG 224 Query: 872 QATKEIEKFENSINLSKNYNLRCNFSRILCKVGKKVYDI 988 Q +E++ + LR + ++ CK G K + + Sbjct: 225 QCLQELQAIVDGFE-DAEVLLRVHTEQVRCKSGNKFFSM 262
>Q0II50:CP057_BOVIN UPF0406 protein C16orf57 homolog - Bos taurus (Bovine)| Length = 265 Score = 92.4 bits (228), Expect = 3e-18 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCK 514 G R+R+FPH GN+A HVYIP + AR+ D + LC Sbjct: 68 GGRVRTFPHERGNWATHVYIP----YEAREEFL------------------DLLDALLCH 105 Query: 515 DEQKLEKVLLGREFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDD 694 + + +++ FH+SL ++V ++ H I V L+ + S R+ ++ + + N + Sbjct: 106 AQTYVPRLVRMEAFHLSLSQSVVLRHHWILPFVQALKDRVASFHRFCFTTDQVKIYTNQE 165 Query: 695 STRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSK--- 865 TR+F+ LEVT +G + VD V L FY++P HISLAW +GD + Sbjct: 166 KTRTFVGLEVT-SGHAHFLDLVAEVDRVMEEFDLSTFYQDPSFHISLAWCVGDARLQMEG 224 Query: 866 --LKQATKEIEKFENSINLSKNYNLRCNFSRILCKVGKKVYDI 988 L++ +++FE+S L LR +I CK G K + + Sbjct: 225 PCLQELQGIVDEFEDSEML-----LRAYAEQIRCKSGNKFFSM 262
>Q9VHB3:U406_DROME UPF0406 protein CG16790 - Drosophila melanogaster (Fruit fly)| Length = 258 Score = 75.1 bits (183), Expect = 5e-13 Identities = 50/187 (26%), Positives = 85/187 (45%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALHVYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCK 514 G R+RSF H GN+A +VY+P + + +A L P L EL Sbjct: 65 GGRMRSFKHERGNWATYVYVPATACVDQLEEFQT--EAIARLEPHL----------ELQP 112 Query: 515 DEQKLEKVLLGREFHVSLGRTVGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDD 694 +E H+SL RTV +Q HQID L+ S + L + N++ Sbjct: 113 NES----------LHLSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEE 162 Query: 695 STRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSKLKQ 874 TR+F++ + + +++ + +D+V + L +FY H+SL W +GD + L + Sbjct: 163 RTRTFIAAPLDAAFVEKMTAILQPIDQVMLDYRLQQFYDPASFHVSLLWCVGDQETLLNE 222 Query: 875 ATKEIEK 895 E+++ Sbjct: 223 KLTELKE 229
>O88910:MPP3_MOUSE MAGUK p55 subfamily member 3 - Mus musculus (Mouse)| Length = 568 Score = 34.7 bits (78), Expect = 0.72 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Frame = +2 Query: 689 DDSTRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHIS--LAWALGDVSS 862 D+ + + + + R G + S +H+ DE+ ++G+ +K P IS LA + G ++ Sbjct: 154 DEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGIAVLHKRP-DEISQILAQSQGSITL 212 Query: 863 KLKQATKEIEKFENS 907 K+ AT+E ++F++S Sbjct: 213 KIIPATQEEDRFKDS 227
>O24301:SUS2_PEA Sucrose synthase 2 - Pisum sativum (Garden pea)| Length = 809 Score = 33.9 bits (76), Expect = 1.2 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 7/111 (6%) Frame = +2 Query: 767 VDEVYRLHGLPEFY-KNP--RPHISLAWALGDVSSKLKQATKEIEKFENSINLSKNYNLR 937 +D V + GL E Y KN R ++L G + K +EIE+ E +L K YNL Sbjct: 582 LDRVKNITGLVESYAKNSKLRELVNLVVVAGYIDVKKSSDREEIEEIEKMHDLMKQYNLN 641 Query: 938 CNFSRILCKVGK----KVYDICKIGD*NDIFVHLPSFVESIPLVVTSN*KC 1078 F I + + ++Y I D FV P+F E+ L V C Sbjct: 642 GEFRWITAQTNRARNGELYRY--IADTKGAFVQ-PAFYEAFGLTVVEAMTC 689
>Q98PK2:EX53_MYCPU Probable 5'-3' exonuclease - Mycoplasma pulmonis| Length = 297 Score = 32.3 bits (72), Expect = 3.6 Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 31/160 (19%) Frame = +2 Query: 335 GSRIRSFPHVEGNYALH--VYIPVVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSE- 505 GS+ F ++GNY +H Y+ N R + L + + ++ +L + A E Sbjct: 5 GSKSEKFLLIDGNYLVHRSYYVSFKFKNNFRSTIYLFFQTIIKIIKNLNPENIFIAFDEE 64 Query: 506 -------LCKDEQKLEKVLLGREF------------HVSLGRTVGIQVHQIDSLVAMLRQ 628 LCK E K ++ + EF ++L + G + H+ D ++A + Sbjct: 65 GGTWRHDLCK-EYKSQRSKMEDEFWNIFKAIREILDSINL-NSGGFRGHEADDVIATITS 122 Query: 629 KFQSQQRYWMD---------LNKWEHFVNDDSTRSFLSLE 721 KF+ + + ++ ++K + +D+ ++ +S+E Sbjct: 123 KFKDENQIYIFSRDKDLLQLIDKNVYITHDNELKNLISIE 162
>Q13368:MPP3_HUMAN MAGUK p55 subfamily member 3 - Homo sapiens (Human)| Length = 585 Score = 32.0 bits (71), Expect = 4.7 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +2 Query: 689 DDSTRSFLSLEVTRTGLPEISKQIHMVDEVYRLHGLPEFYKNPRPHIS--LAWALGDVSS 862 D+ + + + + R G + S +H+ DE+ ++G+ +K P IS LA + G ++ Sbjct: 154 DEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGIAVLHKRP-DEISQILAQSQGSITL 212 Query: 863 KLKQATKEIEKFENS 907 K+ AT+E ++ + S Sbjct: 213 KIIPATQEEDRLKES 227
>Q97WH0:RAD50_SULSO DNA double-strand break repair rad50 ATPase - Sulfolobus| solfataricus Length = 864 Score = 31.6 bits (70), Expect = 6.1 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 16/191 (8%) Frame = +2 Query: 449 VASLVPDLYAVDADYALSELCKDEQKLEKVLLGREFHVSLGRTVGIQVHQ--IDSLVAM- 619 V++ + + +D D ALS + + +L+K+L F +G+ + +++ + IDS + Sbjct: 108 VSNEIEKILGIDKDIALSTIIVRQGELDKIL--ENFQEIMGKILKLELIEKLIDSRGPIV 165 Query: 620 -----LRQKFQSQQRYWMDLNKWEHFVNDDSTRSFLSLEVTRTGLPE----ISKQIHMVD 772 L K + R D N ++ V + R L L+ + L + + K+I + Sbjct: 166 EFRKNLENKLRELDRIEQDYNNFKKTVEEKRAR-VLELKKDKEKLEDEIKNLEKRIKDIK 224 Query: 773 EVYRLHGLPEFYKNPRPHISLAWALGDVSSKLKQATKEIEKF----ENSINLSKNYNLRC 940 + + E+ K ++ L L +L + + IE+ EN L K N Sbjct: 225 DQF-----DEYEKKRNQYLKLTTTLKIKEGELNELNRSIEELRKQTENMDQLEKEINELE 279 Query: 941 NFSRILCKVGK 973 N I K K Sbjct: 280 NLRNIKLKFEK 290 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 176,325,886 Number of extensions: 3734381 Number of successful extensions: 9956 Number of sequences better than 10.0: 12 Number of HSP's gapped: 9940 Number of HSP's successfully gapped: 12 Length of query: 369 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 254 Effective length of database: 69,142,514 Effective search space: 17562198556 Effective search space used: 17562198556 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
