ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf141i17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050873.1| Oryza sativa (japonica cultivar-group) Os01g0763900 (Os01g0763900) mRNA, complete cds Length = 954 Score = 303 bits (153), Expect = 7e-79 Identities = 276/317 (87%) Strand = Plus / Plus Query: 218 ggatcagaggcggactggtgcgtgtgcaggccggacgcgaacgagacggcgctgcaggag 277 |||||||||| || |||||||||||||||||||||| | ||| ||||||||||| || Sbjct: 160 ggatcagagggggcgtggtgcgtgtgcaggccggacgtggcggaggcggcgctgcagaag 219 Query: 278 acgctggactacgcgtgcgggcagggggcggactgcgcgccggtgggcacgggagggagc 337 |||||||||||||||||||||| || ||||||||||| |||||| || | ||| Sbjct: 220 gcgctggactacgcgtgcgggcacggcgcggactgcgccccggtgacgccgagcgggtcg 279 Query: 338 tgccacagccccgactccgtggcggcgcactgctcctacgccgtcaacagctactaccag 397 ||| ||||||| || |||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 280 tgctacagcccaaacaacgtggcggcgcactgctcctacgccgccaacagctacttccag 339 Query: 398 cggaacagccagaccaagggcgccacctgcgacttcggcggcaccgccaccctctcctcc 457 ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 340 cggaattcccaggccaagggcgccacctgcgacttcggcggcgccgccaccctctcctcc 399 Query: 458 gccgaccccagctccggaacctgcaagtaccctgcaagcgcaagtgctgcagggacgagc 517 ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| Sbjct: 400 accgaccccagctcaggaacctgcaaataccctgcaaccgcaagtgctgcagggacaagc 459 Query: 518 accgggaacggcacggc 534 ||||| | ||||||||| Sbjct: 460 accggaaccggcacggc 476
>dbj|AK108127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D06, full insert sequence Length = 954 Score = 303 bits (153), Expect = 7e-79 Identities = 276/317 (87%) Strand = Plus / Plus Query: 218 ggatcagaggcggactggtgcgtgtgcaggccggacgcgaacgagacggcgctgcaggag 277 |||||||||| || |||||||||||||||||||||| | ||| ||||||||||| || Sbjct: 160 ggatcagagggggcgtggtgcgtgtgcaggccggacgtggcggaggcggcgctgcagaag 219 Query: 278 acgctggactacgcgtgcgggcagggggcggactgcgcgccggtgggcacgggagggagc 337 |||||||||||||||||||||| || ||||||||||| |||||| || | ||| Sbjct: 220 gcgctggactacgcgtgcgggcacggcgcggactgcgccccggtgacgccgagcgggtcg 279 Query: 338 tgccacagccccgactccgtggcggcgcactgctcctacgccgtcaacagctactaccag 397 ||| ||||||| || |||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 280 tgctacagcccaaacaacgtggcggcgcactgctcctacgccgccaacagctacttccag 339 Query: 398 cggaacagccagaccaagggcgccacctgcgacttcggcggcaccgccaccctctcctcc 457 ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 340 cggaattcccaggccaagggcgccacctgcgacttcggcggcgccgccaccctctcctcc 399 Query: 458 gccgaccccagctccggaacctgcaagtaccctgcaagcgcaagtgctgcagggacgagc 517 ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| Sbjct: 400 accgaccccagctcaggaacctgcaaataccctgcaaccgcaagtgctgcagggacaagc 459 Query: 518 accgggaacggcacggc 534 ||||| | ||||||||| Sbjct: 460 accggaaccggcacggc 476
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 214 bits (108), Expect = 5e-52 Identities = 204/236 (86%) Strand = Plus / Minus Query: 233 tggtgcgtgtgcaggccggacgcgaacgagacggcgctgcaggagacgctggactacgcg 292 |||||||||||||||||||||| | ||| ||||||||||| || |||||||||||||| Sbjct: 32140090 tggtgcgtgtgcaggccggacgtggcggaggcggcgctgcagaaggcgctggactacgcg 32140031 Query: 293 tgcgggcagggggcggactgcgcgccggtgggcacgggagggagctgccacagccccgac 352 |||||||| || ||||||||||| |||||| || | ||| ||| ||||||| || Sbjct: 32140030 tgcgggcacggcgcggactgcgccccggtgacgccgagcgggtcgtgctacagcccaaac 32139971 Query: 353 tccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacc 412 |||||||||||||||||||||||||| ||||||||||| ||||||||| |||| || Sbjct: 32139970 aacgtggcggcgcactgctcctacgccgccaacagctacttccagcggaattcccaggcc 32139911 Query: 413 aagggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 32139910 aagggcgccacctgcgacttcggcggcgccgccaccctctcctccaccgaccccag 32139855 Score = 48.1 bits (24), Expect = 0.066 Identities = 27/28 (96%) Strand = Plus / Plus Query: 370 ctcctacgccgtcaacagctactaccag 397 |||||||||| ||||||||||||||||| Sbjct: 25268622 ctcctacgccttcaacagctactaccag 25268649 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Minus Query: 500 agtgctgcagggacgagcaccgggaacggcacggc 534 |||||||||||||| |||||||| | ||||||||| Sbjct: 32139617 agtgctgcagggacaagcaccggaaccggcacggc 32139583 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Minus Query: 468 gctccggaacctgcaagtaccctgcaagcgcaag 501 |||| ||||||||||| |||||||||| |||||| Sbjct: 32139770 gctcaggaacctgcaaataccctgcaaccgcaag 32139737 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 ctgcgacttcggcggcaccgccacc 448 |||||||||||||||||| |||||| Sbjct: 25268670 ctgcgacttcggcggcacggccacc 25268694
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 214 bits (108), Expect = 5e-52 Identities = 204/236 (86%) Strand = Plus / Minus Query: 233 tggtgcgtgtgcaggccggacgcgaacgagacggcgctgcaggagacgctggactacgcg 292 |||||||||||||||||||||| | ||| ||||||||||| || |||||||||||||| Sbjct: 10843 tggtgcgtgtgcaggccggacgtggcggaggcggcgctgcagaaggcgctggactacgcg 10784 Query: 293 tgcgggcagggggcggactgcgcgccggtgggcacgggagggagctgccacagccccgac 352 |||||||| || ||||||||||| |||||| || | ||| ||| ||||||| || Sbjct: 10783 tgcgggcacggcgcggactgcgccccggtgacgccgagcgggtcgtgctacagcccaaac 10724 Query: 353 tccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacc 412 |||||||||||||||||||||||||| ||||||||||| ||||||||| |||| || Sbjct: 10723 aacgtggcggcgcactgctcctacgccgccaacagctacttccagcggaattcccaggcc 10664 Query: 413 aagggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 10663 aagggcgccacctgcgacttcggcggcgccgccaccctctcctccaccgaccccag 10608 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Minus Query: 500 agtgctgcagggacgagcaccgggaacggcacggc 534 |||||||||||||| |||||||| | ||||||||| Sbjct: 10370 agtgctgcagggacaagcaccggaaccggcacggc 10336 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Minus Query: 468 gctccggaacctgcaagtaccctgcaagcgcaag 501 |||| ||||||||||| |||||||||| |||||| Sbjct: 10523 gctcaggaacctgcaaataccctgcaaccgcaag 10490
>gb|DQ245386.1| Zea mays clone 14960 mRNA sequence Length = 889 Score = 99.6 bits (50), Expect = 2e-17 Identities = 82/92 (89%), Gaps = 3/92 (3%) Strand = Plus / Plus Query: 360 cggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcg 419 ||||||||||||||| |||| |||||||||||||||| |||| | || ||||||||| Sbjct: 328 cggcgcactgctcctgggccgccaacagctactaccag---aacaacaaggccaagggcg 384 Query: 420 ccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||| |||||||||||||||| Sbjct: 385 ccacctgcgacttcgccggcaccgccaccctc 416 Score = 42.1 bits (21), Expect = 4.1 Identities = 54/65 (83%) Strand = Plus / Plus Query: 233 tggtgcgtgtgcaggccggacgcgaacgagacggcgctgcaggagacgctggactacgcg 292 |||||||||||||||| ||||||| || | ||||||||| |||| | ||||||||| Sbjct: 201 tggtgcgtgtgcaggcaggacgcgtcgcaggccgcgctgcagaagaccatcgactacgcg 260 Query: 293 tgcgg 297 ||||| Sbjct: 261 tgcgg 265
>ref|NM_001062558.1| Oryza sativa (japonica cultivar-group) Os05g0512600 (Os05g0512600) mRNA, complete cds Length = 1016 Score = 99.6 bits (50), Expect = 2e-17 Identities = 109/128 (85%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 362 gcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgcc 421 |||||||||||||||||| |||| ||||| |||| |||||||| ||| |||||| Sbjct: 307 gcgcactgctcctacgccaccaactcctacttccagaagaacagcc---ccatcggcgcc 363 Query: 422 acctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccggaacctgc 481 |||||||||||||||||| |||||||||| || | |||||||||||||||| |||||| Sbjct: 364 acctgcgacttcggcggcgtcgccaccctcaccaacaccgaccccagctccggcacctgc 423 Query: 482 aagtaccc 489 |||||||| Sbjct: 424 aagtaccc 431
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 99.6 bits (50), Expect = 2e-17 Identities = 109/128 (85%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 362 gcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgcc 421 |||||||||||||||||| |||| ||||| |||| |||||||| ||| |||||| Sbjct: 62654 gcgcactgctcctacgccaccaactcctacttccagaagaacagcc---ccatcggcgcc 62710 Query: 422 acctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccggaacctgc 481 |||||||||||||||||| |||||||||| || | |||||||||||||||| |||||| Sbjct: 62711 acctgcgacttcggcggcgtcgccaccctcaccaacaccgaccccagctccggcacctgc 62770 Query: 482 aagtaccc 489 |||||||| Sbjct: 62771 aagtaccc 62778
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 99.6 bits (50), Expect = 2e-17 Identities = 109/128 (85%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 362 gcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgcc 421 |||||||||||||||||| |||| ||||| |||| |||||||| ||| |||||| Sbjct: 142468 gcgcactgctcctacgccaccaactcctacttccagaagaacagcc---ccatcggcgcc 142524 Query: 422 acctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccggaacctgc 481 |||||||||||||||||| |||||||||| || | |||||||||||||||| |||||| Sbjct: 142525 acctgcgacttcggcggcgtcgccaccctcaccaacaccgaccccagctccggcacctgc 142584 Query: 482 aagtaccc 489 |||||||| Sbjct: 142585 aagtaccc 142592
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 99.6 bits (50), Expect = 2e-17 Identities = 109/128 (85%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 362 gcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgcc 421 |||||||||||||||||| |||| ||||| |||| |||||||| ||| |||||| Sbjct: 25199813 gcgcactgctcctacgccaccaactcctacttccagaagaacagcc---ccatcggcgcc 25199869 Query: 422 acctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccggaacctgc 481 |||||||||||||||||| |||||||||| || | |||||||||||||||| |||||| Sbjct: 25199870 acctgcgacttcggcggcgtcgccaccctcaccaacaccgaccccagctccggcacctgc 25199929 Query: 482 aagtaccc 489 |||||||| Sbjct: 25199930 aagtaccc 25199937 Score = 63.9 bits (32), Expect = 1e-06 Identities = 38/40 (95%) Strand = Plus / Minus Query: 264 cggcgctgcaggagacgctggactacgcgtgcgggcaggg 303 |||||||||||| | ||||||||||||||||||||||||| Sbjct: 28731624 cggcgctgcaggtggcgctggactacgcgtgcgggcaggg 28731585 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 676 cagcggcgtcgctgccgccgcggcc 700 |||||||||||| |||||||||||| Sbjct: 24487896 cagcggcgtcgccgccgccgcggcc 24487920
>dbj|AK101753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063E20, full insert sequence Length = 1020 Score = 99.6 bits (50), Expect = 2e-17 Identities = 109/128 (85%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 362 gcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgcc 421 |||||||||||||||||| |||| ||||| |||| |||||||| ||| |||||| Sbjct: 311 gcgcactgctcctacgccaccaactcctacttccagaagaacagcc---ccatcggcgcc 367 Query: 422 acctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccggaacctgc 481 |||||||||||||||||| |||||||||| || | |||||||||||||||| |||||| Sbjct: 368 acctgcgacttcggcggcgtcgccaccctcaccaacaccgaccccagctccggcacctgc 427 Query: 482 aagtaccc 489 |||||||| Sbjct: 428 aagtaccc 435
>emb|CT831855.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071M06, full insert sequence Length = 822 Score = 89.7 bits (45), Expect = 2e-14 Identities = 51/53 (96%) Strand = Plus / Plus Query: 416 ggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 |||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 340 ggcgccacctgcgacttcggcggcgccgccaccctctcctcctccgaccccag 392 Score = 52.0 bits (26), Expect = 0.004 Identities = 29/30 (96%) Strand = Plus / Plus Query: 284 gactacgcgtgcgggcagggggcggactgc 313 |||||| ||||||||||||||||||||||| Sbjct: 211 gactactcgtgcgggcagggggcggactgc 240
>ref|NM_001056921.1| Oryza sativa (japonica cultivar-group) Os03g0421800 (Os03g0421800) mRNA, complete cds Length = 925 Score = 89.7 bits (45), Expect = 2e-14 Identities = 51/53 (96%) Strand = Plus / Plus Query: 416 ggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 |||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 347 ggcgccacctgcgacttcggcggcgccgccaccctctcctcctccgaccccag 399 Score = 52.0 bits (26), Expect = 0.004 Identities = 29/30 (96%) Strand = Plus / Plus Query: 284 gactacgcgtgcgggcagggggcggactgc 313 |||||| ||||||||||||||||||||||| Sbjct: 218 gactactcgtgcgggcagggggcggactgc 247
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 89.7 bits (45), Expect = 2e-14 Identities = 51/53 (96%) Strand = Plus / Minus Query: 416 ggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 |||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 106124 ggcgccacctgcgacttcggcggcgccgccaccctctcctcctccgaccccag 106072 Score = 52.0 bits (26), Expect = 0.004 Identities = 29/30 (96%) Strand = Plus / Minus Query: 284 gactacgcgtgcgggcagggggcggactgc 313 |||||| ||||||||||||||||||||||| Sbjct: 106253 gactactcgtgcgggcagggggcggactgc 106224
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 89.7 bits (45), Expect = 2e-14 Identities = 51/53 (96%) Strand = Plus / Minus Query: 416 ggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 |||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 17377288 ggcgccacctgcgacttcggcggcgccgccaccctctcctcctccgaccccag 17377236 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 365 cactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 ||||| ||||||||||||||||||| ||||||||| |||| ||||| Sbjct: 31005042 cactgttcctacgccgtcaacagcttctaccagcgcaacaaccaga 31004997 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Minus Query: 267 cgctgcaggagacgctggactacgcgtgcgg 297 |||||||| |||||||||||||||||||||| Sbjct: 31005140 cgctgcagaagacgctggactacgcgtgcgg 31005110 Score = 52.0 bits (26), Expect = 0.004 Identities = 29/30 (96%) Strand = Plus / Minus Query: 284 gactacgcgtgcgggcagggggcggactgc 313 |||||| ||||||||||||||||||||||| Sbjct: 17377417 gactactcgtgcgggcagggggcggactgc 17377388
>dbj|AK099491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026N15, full insert sequence Length = 926 Score = 89.7 bits (45), Expect = 2e-14 Identities = 51/53 (96%) Strand = Plus / Plus Query: 416 ggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccag 468 |||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 348 ggcgccacctgcgacttcggcggcgccgccaccctctcctcctccgaccccag 400 Score = 52.0 bits (26), Expect = 0.004 Identities = 29/30 (96%) Strand = Plus / Plus Query: 284 gactacgcgtgcgggcagggggcggactgc 313 |||||| ||||||||||||||||||||||| Sbjct: 219 gactactcgtgcgggcagggggcggactgc 248
>ref|NM_001066733.1| Oryza sativa (japonica cultivar-group) Os07g0600700 (Os07g0600700) mRNA, complete cds Length = 1181 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 358 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 414 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 415 tgggcgccacctgcgacttcaccggcaccgccaccctc 452
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 24452813 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 24452869 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 24452870 tgggcgccacctgcgacttcaccggcaccgccaccctc 24452907
>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ2013_G04 Length = 73667 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 2623 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 2679 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 2680 tgggcgccacctgcgacttcaccggcaccgccaccctc 2717
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 78680 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 78736 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 78737 tgggcgccacctgcgacttcaccggcaccgccaccctc 78774
>dbj|AK112017.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A05, full insert sequence Length = 1116 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 293 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 349 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 350 tgggcgccacctgcgacttcaccggcaccgccaccctc 387
>dbj|AK111970.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C09, full insert sequence Length = 1182 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 358 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 414 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 415 tgggcgccacctgcgacttcaccggcaccgccaccctc 452
>dbj|AK111913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126J18, full insert sequence Length = 1119 Score = 87.7 bits (44), Expect = 8e-14 Identities = 85/98 (86%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||||| |||||||||||||| |||| ||||||||||| |||| ||||||| | ||| Sbjct: 299 ccgtggtggcgcactgctcctgggccgccaacagctacttccagaggaacag---ggcca 355 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||||||||| |||||||||||||||| Sbjct: 356 tgggcgccacctgcgacttcaccggcaccgccaccctc 393
>gb|AY109031.1| Zea mays PCO112628 mRNA sequence Length = 676 Score = 79.8 bits (40), Expect = 2e-11 Identities = 84/98 (85%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 354 ccgtggcggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagacca 413 |||| |||||||||||||||| || | |||||||||||||||| |||| | || ||| Sbjct: 459 ccgtcgcggcgcactgctcctgggcggccaacagctactaccag---aacaacaaggcca 515 Query: 414 agggcgccacctgcgacttcggcggcaccgccaccctc 451 |||||||||||||||||||| |||||||||| ||||| Sbjct: 516 agggcgccacctgcgacttcaccggcaccgccgccctc 553 Score = 58.0 bits (29), Expect = 7e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 233 tggtgcgtgtgcaggccggacgcgaacgagacggcgctgcaggagacgctggactacgcg 292 |||||||||||||||| ||||||| || | ||||||||| ||||| | |||||||| Sbjct: 338 tggtgcgtgtgcaggcaggacgcgtcacaggccgcgctgcagaagacgatcgactacgcc 397 Query: 293 tgcgggcagggggcggactgc 313 |||||| ||||||||||||| Sbjct: 398 tgcgggtcgggggcggactgc 418
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 75.8 bits (38), Expect = 3e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 361 ggcgcactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 ||||||||||||||||||||||||||||| ||||||||| |||| ||||| Sbjct: 82731 ggcgcactgctcctacgccgtcaacagcttctaccagcgcaacaaccaga 82682 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 266 gcgctgcaggagacgctggactacgcgtgcgg 297 ||||||||| |||||||||||||||||||||| Sbjct: 82826 gcgctgcagaagacgctggactacgcgtgcgg 82795
>gb|BT017148.1| Zea mays clone EL01N0366H12.c mRNA sequence Length = 902 Score = 75.8 bits (38), Expect = 3e-10 Identities = 88/104 (84%), Gaps = 3/104 (2%) Strand = Plus / Plus Query: 342 acagccccgactccgtggcggcgcactgctcctacgccgtcaacagctactaccagcgga 401 |||||||| || |||| || ||||||||||||| |||| ||||||||||||||| || Sbjct: 107 acagccccaacaccgtcgccgcgcactgctcctgggccgccaacagctactacca---ga 163 Query: 402 acagccagaccaagggcgccacctgcgacttcggcggcaccgcc 445 ||| | || ||| ||||||||||||||| ||||||||| ||||| Sbjct: 164 acaacaaggccaggggcgccacctgcgatttcggcggcgccgcc 207
>emb|CT827974.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN051D08, full insert sequence Length = 575 Score = 73.8 bits (37), Expect = 1e-09 Identities = 78/91 (85%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 361 ggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgc 420 |||||||||||||| || | ||||||||||| |||| ||||||| | ||| |||||| Sbjct: 365 ggcgcactgctcctgggctgccaacagctacttccagaggaacag---ggccatgggcgc 421 Query: 421 cacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||| |||||||||||||||| Sbjct: 422 cacctgcgacttcaccggcaccgccaccctc 452
>gb|BT017188.1| Zea mays clone EL01N0370G02.c mRNA sequence Length = 679 Score = 69.9 bits (35), Expect = 2e-08 Identities = 41/43 (95%) Strand = Plus / Plus Query: 368 tgctcctacgccgtcaacagctactaccagcggaacagccaga 410 |||||||||||||||||||||| ||||||||| |||||||||| Sbjct: 230 tgctcctacgccgtcaacagcttctaccagcgcaacagccaga 272
>gb|AY110150.1| Zea mays CL16078_1 mRNA sequence Length = 1241 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 415 gggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccgg 474 ||||||||||||||||||| |||| |||||||||| || | |||||||||||||||| Sbjct: 312 gggcgccacctgcgacttcaacggcgtcgccaccctcaccggcaccgaccccagctccgg 371 Query: 475 aacctgcaagt 485 |||||||||| Sbjct: 372 gacctgcaagt 382
>emb|CT834740.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F23, full insert sequence Length = 1209 Score = 63.9 bits (32), Expect = 1e-06 Identities = 38/40 (95%) Strand = Plus / Plus Query: 264 cggcgctgcaggagacgctggactacgcgtgcgggcaggg 303 |||||||||||| | ||||||||||||||||||||||||| Sbjct: 462 cggcgctgcaggtggcgctggactacgcgtgcgggcaggg 501 Score = 44.1 bits (22), Expect = 1.0 Identities = 55/66 (83%) Strand = Plus / Plus Query: 424 ctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccggaacctgcaa 483 ||||||||||| ||||||||||| |||| || | |||| ||||||||| | | ||||| Sbjct: 619 ctgcgacttcgccggcaccgccatcctcaccagcaccgatcccagctcctcatcgtgcaa 678 Query: 484 gtaccc 489 |||||| Sbjct: 679 gtaccc 684
>ref|NM_001062969.1| Oryza sativa (japonica cultivar-group) Os05g0581900 (Os05g0581900) mRNA, complete cds Length = 1233 Score = 63.9 bits (32), Expect = 1e-06 Identities = 38/40 (95%) Strand = Plus / Plus Query: 264 cggcgctgcaggagacgctggactacgcgtgcgggcaggg 303 |||||||||||| | ||||||||||||||||||||||||| Sbjct: 466 cggcgctgcaggtggcgctggactacgcgtgcgggcaggg 505
>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11, complete sequence Length = 112796 Score = 63.9 bits (32), Expect = 1e-06 Identities = 38/40 (95%) Strand = Plus / Minus Query: 264 cggcgctgcaggagacgctggactacgcgtgcgggcaggg 303 |||||||||||| | ||||||||||||||||||||||||| Sbjct: 50337 cggcgctgcaggtggcgctggactacgcgtgcgggcaggg 50298
>dbj|AK109090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A02, full insert sequence Length = 1233 Score = 63.9 bits (32), Expect = 1e-06 Identities = 38/40 (95%) Strand = Plus / Plus Query: 264 cggcgctgcaggagacgctggactacgcgtgcgggcaggg 303 |||||||||||| | ||||||||||||||||||||||||| Sbjct: 466 cggcgctgcaggtggcgctggactacgcgtgcgggcaggg 505
>gb|BT017886.1| Zea mays clone EL01N0514G06.c mRNA sequence Length = 1129 Score = 61.9 bits (31), Expect = 4e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 415 gggcgccacctgcgacttcggcggcaccgccaccctctcctccgccgaccccagctccgg 474 ||||||||||||||||||| |||| |||||| ||| || | |||||||||||||||| Sbjct: 376 gggcgccacctgcgacttcaacggcgtcgccacgctcaccggcaccgaccccagctccgg 435 Query: 475 aacctgcaagt 485 |||||||||| Sbjct: 436 cacctgcaagt 446
>gb|DQ245186.1| Zea mays clone 13610 mRNA sequence Length = 940 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 |||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct: 335 cactgctcctacgccgccaacagcttctaccagcgcaacggccaga 380 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 266 gcgctgcaggagacgctggactacgcgtgcgg 297 ||||||||| |||||||||||||||||||||| Sbjct: 236 gcgctgcagaagacgctggactacgcgtgcgg 267
>ref|NM_001057851.1| Oryza sativa (japonica cultivar-group) Os03g0756300 (Os03g0756300) mRNA, complete cds Length = 819 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 ||||| ||||||||||||||||||| ||||||||| |||| ||||| Sbjct: 291 cactgttcctacgccgtcaacagcttctaccagcgcaacaaccaga 336 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 267 cgctgcaggagacgctggactacgcgtgcgg 297 |||||||| |||||||||||||||||||||| Sbjct: 193 cgctgcagaagacgctggactacgcgtgcgg 223
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 ||||| ||||||||||||||||||| ||||||||| |||| ||||| Sbjct: 28571 cactgttcctacgccgtcaacagcttctaccagcgcaacaaccaga 28616 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 267 cgctgcaggagacgctggactacgcgtgcgg 297 |||||||| |||||||||||||||||||||| Sbjct: 28473 cgctgcagaagacgctggactacgcgtgcgg 28503
>dbj|AK103836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G11, full insert sequence Length = 820 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 ||||| ||||||||||||||||||| ||||||||| |||| ||||| Sbjct: 292 cactgttcctacgccgtcaacagcttctaccagcgcaacaaccaga 337 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 267 cgctgcaggagacgctggactacgcgtgcgg 297 |||||||| |||||||||||||||||||||| Sbjct: 194 cgctgcagaagacgctggactacgcgtgcgg 224
>gb|AY110724.1| Zea mays CL16591_1 mRNA sequence Length = 915 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 365 cactgctcctacgccgtcaacagctactaccagcggaacagccaga 410 |||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct: 603 cactgctcctacgccgccaacagcttctaccagcgcaacggccaga 558 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 266 gcgctgcaggagacgctggactacgcgtgcgg 297 ||||||||| |||||||||||||||||||||| Sbjct: 702 gcgctgcagaagacgctggactacgcgtgcgg 671
>emb|CT827973.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021O20, full insert sequence Length = 1076 Score = 58.0 bits (29), Expect = 7e-05 Identities = 76/91 (83%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 361 ggcgcactgctcctacgccgtcaacagctactaccagcggaacagccagaccaagggcgc 420 |||||||||||||| || | ||||||||||| |||| ||||||| | || ||||| Sbjct: 394 ggcgcactgctcctgggctgccaacagctacttccagaggaacag---ggtcatgggcgg 450 Query: 421 cacctgcgacttcggcggcaccgccaccctc 451 ||||||||||||| |||||||||||||||| Sbjct: 451 cacctgcgacttcaccggcaccgccaccctc 481
>ref|NM_001060378.1| Oryza sativa (japonica cultivar-group) Os04g0612100 (Os04g0612100) mRNA, partial cds Length = 1438 Score = 56.0 bits (28), Expect = 3e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 421 cacctgcgacttcggcggcaccgccacc 448 |||||||||||||||||||||||||||| Sbjct: 1037 cacctgcgacttcggcggcaccgccacc 1064 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Plus Query: 270 tgcaggagacgctggactacgcgtgcgggcagggggcggactgcg 314 |||||||| || ||||||||||||||||| ||||||||| |||| Sbjct: 889 tgcaggaggcgatggactacgcgtgcgggtcgggggcggagtgcg 933
>gb|AY022969.1| Oryza sativa microsatellite MRG5294 containing (CTT)X8, closest to marker R1683, genomic sequence Length = 224 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 411 ccaagggcgccacctgcgacttcggcggcaccgcca 446 |||| ||||||||||||||||| ||||||||||||| Sbjct: 39 ccaacggcgccacctgcgactttggcggcaccgcca 74
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 411 ccaagggcgccacctgcgacttcggcggcaccgcca 446 |||| ||||||||||||||||| ||||||||||||| Sbjct: 21983306 ccaacggcgccacctgcgactttggcggcaccgcca 21983271
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 56.0 bits (28), Expect = 3e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 421 cacctgcgacttcggcggcaccgccacc 448 |||||||||||||||||||||||||||| Sbjct: 31076367 cacctgcgacttcggcggcaccgccacc 31076340 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Minus Query: 270 tgcaggagacgctggactacgcgtgcgggcagggggcggactgcg 314 |||||||| || ||||||||||||||||| ||||||||| |||| Sbjct: 31076515 tgcaggaggcgatggactacgcgtgcgggtcgggggcggagtgcg 31076471
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 56.0 bits (28), Expect = 3e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 421 cacctgcgacttcggcggcaccgccacc 448 |||||||||||||||||||||||||||| Sbjct: 58448 cacctgcgacttcggcggcaccgccacc 58421 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Minus Query: 270 tgcaggagacgctggactacgcgtgcgggcagggggcggactgcg 314 |||||||| || ||||||||||||||||| ||||||||| |||| Sbjct: 58596 tgcaggaggcgatggactacgcgtgcgggtcgggggcggagtgcg 58552
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 411 ccaagggcgccacctgcgacttcggcggcaccgcca 446 |||| ||||||||||||||||| ||||||||||||| Sbjct: 25370 ccaacggcgccacctgcgactttggcggcaccgcca 25335
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 411 ccaagggcgccacctgcgacttcggcggcaccgcca 446 |||| ||||||||||||||||| ||||||||||||| Sbjct: 114023 ccaacggcgccacctgcgactttggcggcaccgcca 113988
>dbj|AK060663.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B06, full insert sequence Length = 1448 Score = 56.0 bits (28), Expect = 3e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 421 cacctgcgacttcggcggcaccgccacc 448 |||||||||||||||||||||||||||| Sbjct: 1047 cacctgcgacttcggcggcaccgccacc 1074 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Plus Query: 270 tgcaggagacgctggactacgcgtgcgggcagggggcggactgcg 314 |||||||| || ||||||||||||||||| ||||||||| |||| Sbjct: 899 tgcaggaggcgatggactacgcgtgcgggtcgggggcggagtgcg 943
>dbj|AK228238.1| Arabidopsis thaliana mRNA for predicted GPI-anchored protein, complete cds, clone: RAFL14-69-B13 Length = 847 Score = 50.1 bits (25), Expect = 0.017 Identities = 25/25 (100%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagct 389 ||||||||||||||||||||||||| Sbjct: 303 cactgctcctacgccgtcaacagct 327
>ref|NM_101723.2| Arabidopsis thaliana unknown protein (AT1G18650) mRNA, complete cds Length = 847 Score = 50.1 bits (25), Expect = 0.017 Identities = 25/25 (100%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagct 389 ||||||||||||||||||||||||| Sbjct: 309 cactgctcctacgccgtcaacagct 333
>gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16 genomic sequence, complete sequence Length = 44879 Score = 50.1 bits (25), Expect = 0.017 Identities = 25/25 (100%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagct 389 ||||||||||||||||||||||||| Sbjct: 1425 cactgctcctacgccgtcaacagct 1449
>gb|BT006195.1| Arabidopsis thaliana At1g18650 mRNA, complete cds Length = 555 Score = 50.1 bits (25), Expect = 0.017 Identities = 25/25 (100%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagct 389 ||||||||||||||||||||||||| Sbjct: 193 cactgctcctacgccgtcaacagct 217
>gb|AY087143.1| Arabidopsis thaliana clone 32195 mRNA, complete sequence Length = 778 Score = 50.1 bits (25), Expect = 0.017 Identities = 25/25 (100%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagct 389 ||||||||||||||||||||||||| Sbjct: 310 cactgctcctacgccgtcaacagct 334
>emb|BX818246.1|CNS0AEDQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL69ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 669 Score = 50.1 bits (25), Expect = 0.017 Identities = 25/25 (100%) Strand = Plus / Plus Query: 365 cactgctcctacgccgtcaacagct 389 ||||||||||||||||||||||||| Sbjct: 130 cactgctcctacgccgtcaacagct 154
>emb|CT829859.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN109J07, full insert sequence Length = 1433 Score = 48.1 bits (24), Expect = 0.066 Identities = 27/28 (96%) Strand = Plus / Plus Query: 370 ctcctacgccgtcaacagctactaccag 397 |||||||||| ||||||||||||||||| Sbjct: 641 ctcctacgccttcaacagctactaccag 668 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 ctgcgacttcggcggcaccgccacc 448 |||||||||||||||||| |||||| Sbjct: 689 ctgcgacttcggcggcacggccacc 713
>ref|NM_001054795.1| Oryza sativa (japonica cultivar-group) Os02g0771700 (Os02g0771700) mRNA, complete cds Length = 1921 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Plus Query: 268 gctgcaggagacgctggactacgcgtgcgggc 299 ||||||| || ||||||||||||||||||||| Sbjct: 1325 gctgcagaaggcgctggactacgcgtgcgggc 1356
>ref|NM_001050182.1| Oryza sativa (japonica cultivar-group) Os01g0631500 (Os01g0631500) mRNA, complete cds Length = 1275 Score = 48.1 bits (24), Expect = 0.066 Identities = 27/28 (96%) Strand = Plus / Plus Query: 370 ctcctacgccgtcaacagctactaccag 397 |||||||||| ||||||||||||||||| Sbjct: 484 ctcctacgccttcaacagctactaccag 511 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 ctgcgacttcggcggcaccgccacc 448 |||||||||||||||||| |||||| Sbjct: 532 ctgcgacttcggcggcacggccacc 556
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Minus Query: 268 gctgcaggagacgctggactacgcgtgcgggc 299 ||||||| || ||||||||||||||||||||| Sbjct: 32587136 gctgcagaaggcgctggactacgcgtgcgggc 32587105 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 423 cctgcgacttcggcggcaccgccacc 448 |||||||||||| ||||||||||||| Sbjct: 17913522 cctgcgacttcgccggcaccgccacc 17913547
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158C05 Length = 145514 Score = 48.1 bits (24), Expect = 0.066 Identities = 27/28 (96%) Strand = Plus / Plus Query: 370 ctcctacgccgtcaacagctactaccag 397 |||||||||| ||||||||||||||||| Sbjct: 65666 ctcctacgccttcaacagctactaccag 65693 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 ctgcgacttcggcggcaccgccacc 448 |||||||||||||||||| |||||| Sbjct: 65714 ctgcgacttcggcggcacggccacc 65738
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Minus Query: 268 gctgcaggagacgctggactacgcgtgcgggc 299 ||||||| || ||||||||||||||||||||| Sbjct: 14507 gctgcagaaggcgctggactacgcgtgcgggc 14476
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Minus Query: 268 gctgcaggagacgctggactacgcgtgcgggc 299 ||||||| || ||||||||||||||||||||| Sbjct: 84109 gctgcagaaggcgctggactacgcgtgcgggc 84078
>dbj|AK102185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086N13, full insert sequence Length = 1922 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Plus Query: 268 gctgcaggagacgctggactacgcgtgcgggc 299 ||||||| || ||||||||||||||||||||| Sbjct: 1326 gctgcagaaggcgctggactacgcgtgcgggc 1357
>dbj|AK063308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F12, full insert sequence Length = 1275 Score = 48.1 bits (24), Expect = 0.066 Identities = 27/28 (96%) Strand = Plus / Plus Query: 370 ctcctacgccgtcaacagctactaccag 397 |||||||||| ||||||||||||||||| Sbjct: 484 ctcctacgccttcaacagctactaccag 511 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 ctgcgacttcggcggcaccgccacc 448 |||||||||||||||||| |||||| Sbjct: 532 ctgcgacttcggcggcacggccacc 556
>dbj|AK058571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E08, full insert sequence Length = 1921 Score = 48.1 bits (24), Expect = 0.066 Identities = 30/32 (93%) Strand = Plus / Plus Query: 268 gctgcaggagacgctggactacgcgtgcgggc 299 ||||||| || ||||||||||||||||||||| Sbjct: 1325 gctgcagaaggcgctggactacgcgtgcgggc 1356
>gb|AC099792.2| Homo sapiens chromosome 1 clone RP11-436K8, complete sequence Length = 207243 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 184 cttgctgctgctcttgctggctg 206 ||||||||||||||||||||||| Sbjct: 183640 cttgctgctgctcttgctggctg 183618
>emb|AL355795.13| Human DNA sequence from clone RP4-668G5 on chromosome 1p23.1-23.3 Contains the 3' end of a novel gene, complete sequence Length = 146715 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 184 cttgctgctgctcttgctggctg 206 ||||||||||||||||||||||| Sbjct: 36096 cttgctgctgctcttgctggctg 36074
>gb|AY107989.1| Zea mays PCO098884 mRNA sequence Length = 565 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Plus Query: 459 ccgaccccagctccggaacctgcaagt 485 |||||||||||||||| |||||||||| Sbjct: 20 ccgaccccagctccggcacctgcaagt 46
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 680 ggcgtcgctgccgccgcggccg 701 |||||||||||||||||||||| Sbjct: 2585947 ggcgtcgctgccgccgcggccg 2585968
>gb|AY683450.1| Lemna minor ubiquitin activating enzyme E1 (UBA2) mRNA, partial cds Length = 677 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 682 cgtcgctgccgccgcggccgct 703 |||||||||||||||||||||| Sbjct: 316 cgtcgctgccgccgcggccgct 337
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 423 cctgcgacttcggcggcaccgccacc 448 |||||||||||| ||||||||||||| Sbjct: 48155 cctgcgacttcgccggcaccgccacc 48180
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 423 cctgcgacttcggcggcaccgccacc 448 |||||||||||| ||||||||||||| Sbjct: 153053 cctgcgacttcgccggcaccgccacc 153078
>emb|CT836413.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122E06, full insert sequence Length = 912 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 676 cagcggcgtcgctgccgccgcggcc 700 |||||||||||| |||||||||||| Sbjct: 58 cagcggcgtcgccgccgccgcggcc 82
>ref|NM_001062501.1| Oryza sativa (japonica cultivar-group) Os05g0500700 (Os05g0500700) mRNA, complete cds Length = 768 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 676 cagcggcgtcgctgccgccgcggcc 700 |||||||||||| |||||||||||| Sbjct: 66 cagcggcgtcgccgccgccgcggcc 90
>ref|XM_001211383.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_02205) mRNA, complete cds Length = 882 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 685 cgctgccgccgcggccgcttttgct 709 |||||||||||||| |||||||||| Sbjct: 349 cgctgccgccgcgggcgcttttgct 325
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 676 cagcggcgtcgctgccgccgcggcc 700 |||||||||||| |||||||||||| Sbjct: 2078 cagcggcgtcgccgccgccgcggcc 2102
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 676 cagcggcgtcgctgccgccgcggcc 700 |||||||||||| |||||||||||| Sbjct: 90569 cagcggcgtcgccgccgccgcggcc 90593
>gb|AC149720.2| Bos taurus BAC CH240-248M14 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 180339 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1033 ctttatatatccaaaatgttacaca 1057 ||||||| ||||||||||||||||| Sbjct: 107225 ctttataaatccaaaatgttacaca 107201
>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence Length = 97982 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 561 ccagcccttcttcgcccggctcgac 585 ||||||||||||||||||| ||||| Sbjct: 87601 ccagcccttcttcgcccgggtcgac 87577
>ref|XM_845213.1| PREDICTED: Canis familiaris similar to colony stimulating factor 3 isoform b precursor (LOC608246), mRNA Length = 861 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 acggcgctgcaggagacgctg 283 ||||||||||||||||||||| Sbjct: 421 acggcgctgcaggagacgctg 441
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 gcaccgccaccctctcctccgccga 462 ||||||||| ||||||||||||||| Sbjct: 20778158 gcaccgccatcctctcctccgccga 20778134
>emb|AL356156.14| Human DNA sequence from clone RP11-351L5 on chromosome 9, complete sequence Length = 130598 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1030 tcactttatatatccaaaatg 1050 ||||||||||||||||||||| Sbjct: 59197 tcactttatatatccaaaatg 59217
>emb|CR759771.5| Zebrafish DNA sequence from clone DKEY-261N3 in linkage group 19, complete sequence Length = 89436 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 799 cattctttttaatcatctaca 819 ||||||||||||||||||||| Sbjct: 70594 cattctttttaatcatctaca 70574
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 717 gcggcctcttcggcgttgccg 737 ||||||||||||||||||||| Sbjct: 2519164 gcggcctcttcggcgttgccg 2519184
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 gcaccgccaccctctcctccgccga 462 ||||||||| ||||||||||||||| Sbjct: 32833 gcaccgccatcctctcctccgccga 32809
>gb|AC103351.11| Mus musculus chromosome 18, clone RP23-406A11, complete sequence Length = 174352 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 ggcacgggagggagctgccacagcc 347 ||||| ||||||||||||||||||| Sbjct: 2113 ggcactggagggagctgccacagcc 2137
>gb|AC155947.8| Mus musculus 6 BAC RP24-417N21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156871 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 cttgctgctgctcttgctggc 204 ||||||||||||||||||||| Sbjct: 72506 cttgctgctgctcttgctggc 72486
>emb|X76414.1|HCVHN3E Hepatitis C virus envelope 1 gene, HN3 isolate Length = 709 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 agcggagcagagcgcgggcgc 123 ||||||||||||||||||||| Sbjct: 289 agcggagcagagcgcgggcgc 269
>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete sequence Length = 196310 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 863 gttctgctttaatgtttgtctgtgt 887 ||||||||||||||| ||||||||| Sbjct: 112530 gttctgctttaatgtatgtctgtgt 112506
>gb|AF019145.2|AF019145 Zea mays cysteine protease Mir1 (mir1) mRNA, complete cds Length = 1463 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 866 aacgagacggcgctgcaggag 886
>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome Length = 1138011 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 420 ccacctgcgacttcggcggcaccgccacc 448 |||||||||||| ||||| |||||||||| Sbjct: 1058517 ccacctgcgactccggcgccaccgccacc 1058545
>gb|DQ147253.1| Zea diploperennis isolate d8 cysteine protease Mir1 gene, partial cds Length = 1020 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 933 aacgagacggcgctgcaggag 953
>gb|DQ147252.1| Zea diploperennis isolate d7 cysteine protease Mir1 gene, partial cds Length = 1020 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 933 aacgagacggcgctgcaggag 953
>gb|DQ147251.1| Zea diploperennis isolate d6 cysteine protease Mir1 gene, partial cds Length = 1029 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 942 aacgagacggcgctgcaggag 962
>gb|DQ147250.1| Zea diploperennis isolate d5 cysteine protease Mir1 gene, partial cds Length = 1013 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 926 aacgagacggcgctgcaggag 946
>gb|DQ147249.1| Zea diploperennis isolate d4_116 cysteine protease Mir1 gene, partial cds Length = 1020 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 933 aacgagacggcgctgcaggag 953
>gb|DQ147248.1| Zea diploperennis isolate d4 cysteine protease Mir1 gene, partial cds Length = 1018 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 931 aacgagacggcgctgcaggag 951
>gb|DQ147247.1| Zea diploperennis isolate d3 cysteine protease Mir1 gene, partial cds Length = 1015 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 928 aacgagacggcgctgcaggag 948
>gb|DQ147246.1| Zea diploperennis isolate d2 cysteine protease Mir1 gene, partial cds Length = 1020 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 933 aacgagacggcgctgcaggag 953
>gb|DQ147245.1| Zea diploperennis isolate d1 cysteine protease Mir1 (mir1) gene, partial cds Length = 1019 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 932 aacgagacggcgctgcaggag 952
>gb|DQ147244.1| Zea mays subsp. parviglumis isolate p15 cysteine protease Mir1 (mir1) gene, partial cds Length = 1014 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 927 aacgagacggcgctgcaggag 947
>gb|DQ147243.1| Zea mays subsp. parviglumis isolate p14 cysteine protease Mir1 (mir1) gene, partial cds Length = 1025 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 938 aacgagacggcgctgcaggag 958
>gb|DQ147242.1| Zea mays subsp. parviglumis isolate p13 cysteine protease Mir1 (mir1) gene, partial cds Length = 994 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 907 aacgagacggcgctgcaggag 927
>gb|DQ147241.1| Zea mays subsp. parviglumis isolate p12 cysteine protease Mir1 (mir1) gene, partial cds Length = 1006 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 919 aacgagacggcgctgcaggag 939
>gb|DQ147240.1| Zea mays subsp. parviglumis isolate p11 cysteine protease Mir1 (mir1) gene, partial cds Length = 1038 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 951 aacgagacggcgctgcaggag 971
>gb|DQ147239.1| Zea mays subsp. parviglumis isolate p9 cysteine protease Mir1 (mir1) gene, partial cds Length = 1023 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 936 aacgagacggcgctgcaggag 956
>gb|DQ147238.1| Zea mays subsp. parviglumis isolate p8 cysteine protease Mir1 (mir1) gene, partial cds Length = 1036 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 949 aacgagacggcgctgcaggag 969
>gb|DQ147237.1| Zea mays subsp. parviglumis isolate p6 cysteine protease Mir1 (mir1) gene, partial cds Length = 1045 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 958 aacgagacggcgctgcaggag 978
>gb|DQ147236.1| Zea mays subsp. parviglumis isolate p5 cysteine protease Mir1 (mir1) gene, partial cds Length = 1025 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 938 aacgagacggcgctgcaggag 958
>gb|DQ147235.1| Zea mays subsp. parviglumis isolate p4 cysteine protease Mir1 (mir1) gene, partial cds Length = 997 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 910 aacgagacggcgctgcaggag 930
>gb|DQ147234.1| Zea mays subsp. parviglumis isolate p3 cysteine protease Mir1 (mir1) gene, partial cds Length = 1031 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 944 aacgagacggcgctgcaggag 964
>gb|DQ147233.1| Zea mays subsp. parviglumis isolate p2 cysteine protease Mir1 (mir1) gene, partial cds Length = 987 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 900 aacgagacggcgctgcaggag 920
>gb|DQ147232.1| Zea mays subsp. parviglumis isolate p1 cysteine protease Mir1 (mir1) gene, partial cds Length = 1021 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aacgagacggcgctgcaggag 277 ||||||||||||||||||||| Sbjct: 934 aacgagacggcgctgcaggag 954 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 147,103,098 Number of extensions: 8307546 Number of successful extensions: 249786 Number of sequences better than 10.0: 111 Number of HSP's gapped: 249768 Number of HSP's successfully gapped: 149 Length of query: 1081 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1058 Effective length of database: 18,503,978,556 Effective search space: 19577209312248 Effective search space used: 19577209312248 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
