ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf141h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os01g74300:12001.t06709:unspliced-genomic metallothionei... 39 0.022
2LOC_Os10g17660:12010.t01323:unspliced-genomic profilin A, pu... 31 4.9
3LOC_Os05g02070:12005.t00106:unspliced-genomic metallothionei... 31 4.9
4LOC_Os08g25624:12008.t02329:unspliced-genomic triose phospha... 31 6.7
5LOC_Os01g34040:12001.t02969:unspliced-genomic retrotransposo... 25 7.8
6LOC_Os08g23100:12008.t02082:unspliced-genomic cyclase, putat... 28 9.1

>LOC_Os01g74300:12001.t06709:unspliced-genomic metallothionein-like protein type 2, putative, expressed|
          Length = 1007
 Score = 39.1 bits (79), Expect = 0.022
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = -2 / -1

                                 
Query: 283 VPHLHWVQPQPPFSAAISIPPE 218
           VPHL  +QPQ PFSA IS PPE
Sbjct: 683 VPHLQVLQPQLPFSAPISDPPE 618



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>LOC_Os10g17660:12010.t01323:unspliced-genomic profilin A, putative, expressed|
          Length = 1111

 Score = 31.3 bits (62), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3 / -2

                                 
Query: 441 VPCHPCKTPS*IKSPWFNYKKK 506
           +P  PCK+    K+PWF Y KK
Sbjct: 618 MPPDPCKSNHCNKNPWFTYDKK 553



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>LOC_Os05g02070:12005.t00106:unspliced-genomic metallothionein-like protein type 2, putative, expressed|
          Length = 1112

 Score = 31.3 bits (62), Expect = 4.9
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2 / -1

                         
Query: 283 VPHLHWVQPQPPFS 242
           VPHL  +QPQPPFS
Sbjct: 650 VPHLQVLQPQPPFS 609



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>LOC_Os08g25624:12008.t02329:unspliced-genomic triose phosphate/phosphate translocator, non-green|
            plastid,chloroplast precursor, putative, expressed
          Length = 6860

 Score = 30.9 bits (61), Expect = 6.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2 / -3

                            
Query: 329  MHAPCMHHRIVSIYYY 376
            +H+PC H+R+ SIY Y
Sbjct: 4584 IHSPCCHNRVCSIYKY 4537



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>LOC_Os01g34040:12001.t02969:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 6035

 Score = 24.9 bits (48), Expect(2) = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2 / -3

                                        
Query: 409 RPSIRLRLHGMIVVDRYDTMMHARCMHDR 323
           +P+ RL L G   V R+D ++  RC  +R
Sbjct: 897 QPATRLTLEGHGKVIRHDPVVSPRCHDNR 811



 Score = 22.6 bits (43), Expect(2) = 7.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1 / -1

                           
Query: 488 PGRFYLGGRFTRMAWH 441
           PGR Y+  +F    WH
Sbjct: 986 PGRGYVPWKFVMNCWH 939



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>LOC_Os08g23100:12008.t02082:unspliced-genomic cyclase, putative, expressed|
          Length = 7144

 Score = 27.6 bits (54), Expect(2) = 9.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3 / -1

                                  
Query: 447  CHPCKTPS*IKSPWFNYKKKKK 512
            CH C     +K   FN KKKKK
Sbjct: 4120 CHVCSRHYYLKKKSFNIKKKKK 4055



 Score = 24.4 bits (47), Expect(2) = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2 / -3

                                  
Query: 314  DRSSIMHAPCMHHRIVSIYYYH 379
            D + I   PC+H + +SI Y H
Sbjct: 5225 DSTYIEKIPCVHLKTLSIPYMH 5160


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 140,383,592
Number of extensions: 1970392
Number of successful extensions: 6030
Number of sequences better than 10.0: 6
Length of query: 170
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 122
Effective length of database: 52,912,542
Effective search space: 6455330124
Effective search space used: 6455330124
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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