>P58728:SF3BB_ARATH Protein At4g14342 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 87
 Score =  174 bits (442), Expect = 3e-43
 Identities = 81/87 (93%), Positives = 86/87 (98%)
 Frame = +2

Query: 257 MQASDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAEN 436
           MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YF+IAEN
Sbjct: 1   MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 437 ESIGRERYEFMQKMLLPCGLPPERDED 517
           ESIGRERY FMQKMLLPCGLPPER+E+
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPEREEE 87

>Q9LW64:SF3BA_ARATH Protein At3g23325 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 87

 Score =  172 bits (435), Expect = 2e-42
 Identities = 79/87 (90%), Positives = 85/87 (97%)
 Frame = +2

Query: 257 MQASDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAEN 436
           MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YF+IAEN
Sbjct: 1   MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 437 ESIGRERYEFMQKMLLPCGLPPERDED 517
           ESIGRERY FMQKMLLPCGLPPER+++
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPEREDE 87

>Q9VHI4:SF3B5_DROME Probable splicing factor 3B subunit 5 - Drosophila melanogaster|
           (Fruit fly)
          Length = 85

 Score =  121 bits (303), Expect = 3e-27
 Identities = 54/83 (65%), Positives = 67/83 (80%)
 Frame = +2

Query: 269 DRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESIG 448
           +R+NI+SQLEHLQ+KY+GTGHAD T+FEW  N  RDS ASY+GHY +L YF+IAENES  
Sbjct: 3   ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 449 RERYEFMQKMLLPCGLPPERDED 517
           R R+  M++ML PCG PPE+ ED
Sbjct: 63  RVRFNLMERMLQPCGPPPEKLED 85

>Q9BWJ5:SF3B5_HUMAN Splicing factor 3B subunit 5 - Homo sapiens (Human)|
          Length = 86

 Score =  117 bits (293), Expect = 5e-26
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = +2

Query: 266 SDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESI 445
           +DR+ I+SQLEHLQ+KY+GTGHAD T++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 446 GRERYEFMQKMLLPCGLPPERDED 517
            R R+  M+KML PCG P ++ E+
Sbjct: 62  ARVRFNLMEKMLQPCGPPADKPEE 85

>Q56K13:SF3B5_BOVIN Splicing factor 3B subunit 5 - Bos taurus (Bovine)|
          Length = 86

 Score =  117 bits (293), Expect = 5e-26
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = +2

Query: 266 SDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESI 445
           +DR+ I+SQLEHLQ+KY+GTGHAD T++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 446 GRERYEFMQKMLLPCGLPPERDED 517
            R R+  M+KML PCG P ++ E+
Sbjct: 62  ARVRFNLMEKMLQPCGPPADKPEE 85

>Q923D4:SF3B5_MOUSE Splicing factor 3B subunit 5 - Mus musculus (Mouse)|
          Length = 86

 Score =  113 bits (283), Expect = 7e-25
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = +2

Query: 266 SDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESI 445
           +DR+ I+SQLEHLQ+KY+GTGHAD T++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 446 GRERYEFMQKMLLPCGLPPERDED 517
            R R+  M+KML P G P ++ E+
Sbjct: 62  ARVRFNLMEKMLQPSGPPADKPEE 85

>Q9P7R6:YHV5_SCHPO Uncharacterized protein C211.05 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 85

 Score = 80.9 bits (198), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 55/83 (66%)
 Frame = +2

Query: 266 SDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESI 445
           +DR    ++LE LQA+YVG G+A  T++EW VN  RD+ +S +GH P+LAY + A  E  
Sbjct: 2   ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61

Query: 446 GRERYEFMQKMLLPCGLPPERDE 514
            + R   ++KM++PCG PP  ++
Sbjct: 62  VQVRKNLLEKMIMPCGPPPPSNQ 84

>P0C074:RCP10_YEAST RDS3 complex subunit 10 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 85

 Score = 35.8 bits (81), Expect = 0.19
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 311 KYVGTGHADLTRFEWAVNIQRDSYASYIGHYPMLAYFSIAENE-SIGRERYEFMQKM 478
           KY+G G    TR +W  N++ D+  +  GH   L Y S++  + SI   R   ++ M
Sbjct: 17  KYIGLGDESTTREQWQRNVRNDTLNTLQGHSASLEYVSLSRGDLSIRDTRIHLLKSM 73

>Q15413:RYR3_HUMAN Ryanodine receptor 3 - Homo sapiens (Human)|
          Length = 4870

 Score = 33.9 bits (76), Expect = 0.73
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 407  MLAYFSIAEN----ESIGRERYEFMQKMLLPCGLPPERDED 517
            ML  F + EN    E I  E Y+F + +LL CG+P E +E+
Sbjct: 1876 MLLNFQLGENCPCPEEIREELYDFHEDLLLHCGVPLEEEEE 1916

>O62732:SYN1_CANFA Synapsin-1 - Canis familiaris (Dog)|
          Length = 415

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +2

Query: 110 PATLPYPRRLPAPSSSSTNAVDLYSRRSQI*FRGSRLSHPGSGPYPSATMQAS 268
           PA  P P+RLP+P+S+    V      SQ   R SR    G G  P+A   AS
Sbjct: 227 PAGSPLPQRLPSPTSAPQQPVSQAQPLSQAQGRQSRPVAGGPGAPPAARPPAS 279

>Q09215:YP66_CAEEL Uncharacterized protein B0495.6 - Caenorhabditis elegans|
          Length = 87

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 269 DRFNINSQLEHLQAKYVGT 325
           +RF++ +QLEHLQ+KY GT
Sbjct: 6   ERFHVLAQLEHLQSKYTGT 24

>Q08812:SYRM_RHIET HTH-type transcriptional regulator syrM - Rhizobium etli|
          Length = 336

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 103 LRPGDPPVSPSPARPLLLEHERC 171
           LR  DPP+ P+P + +L+ HERC
Sbjct: 292 LRVVDPPLEPAPYKVMLIWHERC 314

>Q4IB96:VID21_GIBZE Chromatin modification-related protein VID21 - Gibberella zeae|
            (Fusarium graminearum)
          Length = 1629

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
 Frame = +3

Query: 168  LSISTRAARRSDSGAPGSPIQGQ-GRTRRPPCRLATGSTSILNLSTSKPNMS-------- 320
            +S   RAA+    G PG+P QG  G  + PP ++      +  ++++  N          
Sbjct: 1377 ISEQQRAAQMHAQGGPGTPGQGAVGAQQSPPAQMRNAMNGVNGINSNPMNQQSFLNNAQA 1436

Query: 321  -----EQGMLT*PDLNGL 359
                  QG L+ P  NGL
Sbjct: 1437 MMAQFNQGNLSSPQANGL 1454

>P21325:RT67_ECOLI Retron EC67 protein - Escherichia coli|
          Length = 586

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +2

Query: 242 YPSATMQASD----RFNINSQLEHLQAKY---VGTGHADLTRFEWAVNIQRDSYASYIGH 400
           YP    + +D      N+N    + + KY   +  G ADL +F   V   +++YASY G 
Sbjct: 393 YPELFREKTDSKKKEINLNIFKSNEKTKYFLDLSGGTADLKKF---VERYKNNYASYYGS 449

Query: 401 YPMLAYFSIAENESIGRERYEFMQKMLLPC 490
            P      + +N++   +   F++  +  C
Sbjct: 450 VPKQPVIMVLDNDTGPSDLLNFLRNKVKSC 479


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 130,068,329
Number of extensions: 2849349
Number of successful extensions: 7827
Number of sequences better than 10.0: 14
Number of HSP's gapped: 7809
Number of HSP's successfully gapped: 14
Length of query: 260
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 149
Effective length of database: 70,239,694
Effective search space: 10465714406
Effective search space used: 10465714406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)