| Clone Name | FLbaf148o11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY037144.1| Homo sapiens hypothetical protein CX157 mRNA, complete cds Length = 588 Score = 795 bits (401), Expect = 0.0 Identities = 422/429 (98%) Strand = Plus / Plus Query: 52 tccgaatccaccaacgcagaggagtggagagagaaactccggagaagaagaaggagcggc 111 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1 tccgaatccaccaacgcagaggagtggagagagaaactccggagaagaagcaggagcggg 60 Query: 112 tgcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggggcagaa 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 61 tgcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcgggccagaa 120 Query: 172 ggagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggccgtcca 231 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggagcgggtgcggctgctctaccgccgcgcgctcaaggacaccctcaactgggccgtcca 180 Query: 232 ccgccacctcttctaccaggatgcgtccgagctcagggacaagttcgaggccaacagaaa 291 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 181 ccgccacctcttctaccaggacgcgtccgagctcagggacaagttcgaggccaacagaaa 240 Query: 292 tgtggagaacctggacgtgatcgataggctcatcgaggatgcggaggcacagcagaggaa 351 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 241 tgtggagaacctggacgtgatcgataggctcatcgaggacgcggaggcgcagcagaggaa 300 Query: 352 cttccagcacccggatccttacattgttccatgggctcctggtggcactaaattcacaag 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 cttccagcacccggatccttacattgttccatgggctcctggtggcactaaattcacaag 360 Query: 412 gaaccctcctccacctgaagggattgagattatctacaactatggcaaagaagaccaatg 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gaaccctcctccacctgaagggattgagattatctacaactatggcaaagaagaccaatg 420 Query: 472 aacaagaat 480 ||||||||| Sbjct: 421 aacaagaat 429 Score = 186 bits (94), Expect = 7e-44 Identities = 119/126 (94%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 485 agcctggcaccggtggagtgcaaaggacttgctttcacttttccagatgatagcatgcaa 544 ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 447 agcctggcaccggcggagtgcaaaggacttacttttgcttttccagatgatagcatgcaa 506 Query: 545 ctgagctgctgtatga-ttgttaagaacaaaataaaattactcgcctccttccatgcgtt 603 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 507 ctgagctgctgtatgatttgttaagaacaaaataaaattactagcctccttccatgtgtt 566 Query: 604 tctttt 609 |||||| Sbjct: 567 tctttt 572
>ref|NM_001065106.1| Oryza sativa (japonica cultivar-group) Os06g0714100 (Os06g0714100) mRNA, complete cds Length = 672 Score = 424 bits (214), Expect = e-115 Identities = 331/370 (89%) Strand = Plus / Plus Query: 106 agcggctgcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggg 165 |||||| ||||||||| | ||||| ||||| ||||||||| |||||||||||| |||| Sbjct: 47 agcggcggcggcggcggcggcgatggcgacgtcggcggggttcctggcgcggcgggcggc 106 Query: 166 gcagaaggagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggc 225 |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 107 gcagaaggagagggtgcggctgctctaccgccgcgccctcaaggacaccctcaactgggc 166 Query: 226 cgtccaccgccacctcttctaccaggatgcgtccgagctcagggacaagttcgaggccaa 285 ||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| || Sbjct: 167 cgtccaccgccacctcttctaccaggacgcgtcggatctcagggagaagttcgaggcgaa 226 Query: 286 cagaaatgtggagaacctggacgtgatcgataggctcatcgaggatgcggaggcacagca 345 |||| ||||||| |||| ||| |||||||||||||| ||||| |||||||| || ||| | Sbjct: 227 cagagatgtggacaacccggatgtgatcgataggcttatcgatgatgcggaagcgcagta 286 Query: 346 gaggaacttccagcacccggatccttacattgttccatgggctcctggtggcactaaatt 405 ||||| |||||||| || ||||| |||||||| ||||||||||||||||||| |||||| Sbjct: 287 caggaatttccagcatcccgatccctacattgtcccatgggctcctggtggcagtaaatt 346 Query: 406 cacaaggaaccctcctccacctgaagggattgagattatctacaactatggcaaagaaga 465 |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||||| Sbjct: 347 cacaagaaaccctcctccacctaaagggatcgagattatctacaactatggaaaagaaga 406 Query: 466 ccaatgaaca 475 | ||||||| Sbjct: 407 ctgatgaaca 416
>gb|DQ245476.1| Zea mays clone 15904 mRNA sequence Length = 771 Score = 416 bits (210), Expect = e-113 Identities = 327/366 (89%) Strand = Plus / Plus Query: 113 gcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggggcagaag 172 |||||||||||||| ||| || ||||||||||||||||||||||||| |||| ||||||| Sbjct: 33 gcggcggcgaggtctatggcgtcgacggcggggtacctggcgcggcgggcggcgcagaag 92 Query: 173 gagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggccgtccac 232 ||||||||||| || ||||||||| | |||||||||||||| |||||||||||||||||| Sbjct: 93 gagcgggtgcgcctgctctaccgcagggcgctcaaggacacgctcaactgggccgtccac 152 Query: 233 cgccacctcttctaccaggatgcgtccgagctcagggacaagttcgaggccaacagaaat 292 |||||||||||||||||||| ||||| || ||| |||||||||||||||||||| || | Sbjct: 153 cgccacctcttctaccaggacgcgtcggatctccgggacaagttcgaggccaaccgacac 212 Query: 293 gtggagaacctggacgtgatcgataggctcatcgaggatgcggaggcacagcagaggaac 352 ||||| |||||||||||| |||||||||||||||| ||||||||||| ||| | |||||| Sbjct: 213 gtggataacctggacgtggtcgataggctcatcgacgatgcggaggctcagtacaggaac 272 Query: 353 ttccagcacccggatccttacattgttccatgggctcctggtggcactaaattcacaagg 412 ||||||||||| ||||| ||||||||||||||||| || | ||||||||||||||||| Sbjct: 273 ttccagcaccccgatccctacattgttccatgggcaccacgcggcactaaattcacaaga 332 Query: 413 aaccctcctccacctgaagggattgagattatctacaactatggcaaagaagaccaatga 472 ||||| ||||||||| ||||||| ||||| |||||||| |||||||| || ||||| | | Sbjct: 333 aacccccctccacctcaagggatcgagatcatctacaattatggcaaggaggaccagtaa 392 Query: 473 acaaga 478 |||||| Sbjct: 393 acaaga 398
>dbj|AK121079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062M13, full insert sequence Length = 673 Score = 416 bits (210), Expect = e-113 Identities = 330/370 (89%) Strand = Plus / Plus Query: 106 agcggctgcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggg 165 |||||| ||||||||| | ||||| ||||| ||||||||| |||||||||||| |||| Sbjct: 48 agcggcggcggcggcggcggcgatggcgacgtcggcggggttcctggcgcggcgggcggc 107 Query: 166 gcagaaggagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggc 225 |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 108 gcagaaggagagggtgcggctgctctaccgccgcgccatcaaggacaccctcaactgggc 167 Query: 226 cgtccaccgccacctcttctaccaggatgcgtccgagctcagggacaagttcgaggccaa 285 ||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| || Sbjct: 168 cgtccaccgccacctcttctaccaggacgcgtcggatctcagggagaagttcgaggcgaa 227 Query: 286 cagaaatgtggagaacctggacgtgatcgataggctcatcgaggatgcggaggcacagca 345 |||| ||||||| |||| ||| |||||||||||||| ||||| |||||||| || ||| | Sbjct: 228 cagagatgtggacaacccggatgtgatcgataggcttatcgatgatgcggaagcgcagta 287 Query: 346 gaggaacttccagcacccggatccttacattgttccatgggctcctggtggcactaaatt 405 ||||| |||||||| || ||||| |||||||| ||||||||||||||||||| |||||| Sbjct: 288 caggaatttccagcatcccgatccctacattgtcccatgggctcctggtggcagtaaatt 347 Query: 406 cacaaggaaccctcctccacctgaagggattgagattatctacaactatggcaaagaaga 465 |||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||||| Sbjct: 348 cacaagaaaccctcctccacctaaagggatcgagattatctacaactatggaaaagaaga 407 Query: 466 ccaatgaaca 475 | ||||||| Sbjct: 408 ctgatgaaca 417
>gb|AY103970.1| Zea mays PCO107604 mRNA sequence Length = 728 Score = 416 bits (210), Expect = e-113 Identities = 327/366 (89%) Strand = Plus / Plus Query: 113 gcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggggcagaag 172 |||||||||||||| ||| || ||||||||||||||||||||||||| |||| ||||||| Sbjct: 86 gcggcggcgaggtctatggcgtcgacggcggggtacctggcgcggcgggcggcgcagaag 145 Query: 173 gagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggccgtccac 232 ||||||||||| || ||||||||| | |||||||||||||| |||||||||||||||||| Sbjct: 146 gagcgggtgcgcctgctctaccgcagggcgctcaaggacacgctcaactgggccgtccac 205 Query: 233 cgccacctcttctaccaggatgcgtccgagctcagggacaagttcgaggccaacagaaat 292 |||||||||||||||||||| ||||| || ||| |||||||||||||||||||| || | Sbjct: 206 cgccacctcttctaccaggacgcgtcggatctccgggacaagttcgaggccaaccgacac 265 Query: 293 gtggagaacctggacgtgatcgataggctcatcgaggatgcggaggcacagcagaggaac 352 ||||| |||||||||||| ||||||||||||| || ||||||||||| ||| | |||||| Sbjct: 266 gtggataacctggacgtggtcgataggctcattgacgatgcggaggctcagtacaggaac 325 Query: 353 ttccagcacccggatccttacattgttccatgggctcctggtggcactaaattcacaagg 412 ||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||||| Sbjct: 326 ttccagcaccccgatccctacattgttccatgggcaccaggcggcactaaattcacaaga 385 Query: 413 aaccctcctccacctgaagggattgagattatctacaactatggcaaagaagaccaatga 472 ||||| ||||||||| ||||||| ||||| |||||||| |||||||| || ||||| | | Sbjct: 386 aacccccctccacctcaagggatcgagatcatctacaattatggcaaggaggaccagtaa 445 Query: 473 acaaga 478 |||||| Sbjct: 446 acaaga 451
>emb|CT828167.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005A06, full insert sequence Length = 580 Score = 375 bits (189), Expect = e-100 Identities = 303/341 (88%) Strand = Plus / Plus Query: 126 cgatgtcgacgacggcggggtacctggcgcggcgcgcggggcagaaggagcgggtgcggc 185 ||||| ||||| ||||||||| ||||||||| | || | |||||||||| ||||||||| Sbjct: 15 cgatggcgacgtcggcggggttcctggcgcgtctggccgcgcagaaggagagggtgcggc 74 Query: 186 ttctctaccgccgcgcgctcaaggacaccctcaactgggccgtccaccgccacctcttct 245 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 tgctctaccgccgcgccctcaaggacaccctcaactgggccgtccaccgccacctcttct 134 Query: 246 accaggatgcgtccgagctcagggacaagttcgaggccaacagaaatgtggagaacctgg 305 ||||||| ||||| || |||||||| ||||||||||| |||||| ||||||| |||| || Sbjct: 135 accaggacgcgtcggatctcagggagaagttcgaggcgaacagagatgtggacaacccgg 194 Query: 306 acgtgatcgataggctcatcgaggatgcggaggcacagcagaggaacttccagcacccgg 365 | |||||||||||||| ||||| |||||||| || ||| | ||||| |||||||| || | Sbjct: 195 atgtgatcgataggcttatcgatgatgcggaagcgcagtacaggaatttccagcatcccg 254 Query: 366 atccttacattgttccatgggctcctggtggcactaaattcacaaggaaccctcctccac 425 |||| |||||||| ||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 255 atccctacattgtcccatgggctcctggtggcagtatattcacaagaaaccctcctccac 314 Query: 426 ctgaagggattgagattatctacaactatggcaaagaagac 466 || ||||||| ||||||||||||||||||| ||||||||| Sbjct: 315 ctaaagggatctagattatctacaactatggaaaagaagac 355
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 196 bits (99), Expect = 7e-47 Identities = 135/147 (91%) Strand = Plus / Minus Query: 106 agcggctgcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggg 165 |||||| ||||||||| | ||||| ||||| ||||||||| |||||||||||| |||| Sbjct: 29765794 agcggcggcggcggcggcggcgatggcgacgtcggcggggttcctggcgcggcgggcggc 29765735 Query: 166 gcagaaggagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggc 225 |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 29765734 gcagaaggagagggtgcggctgctctaccgccgcgccctcaaggacaccctcaactgggc 29765675 Query: 226 cgtccaccgccacctcttctaccagga 252 ||||||||||||||||||||||||||| Sbjct: 29765674 cgtccaccgccacctcttctaccagga 29765648 Score = 83.8 bits (42), Expect = 7e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 380 ccatgggctcctggtggcactaaattcacaaggaaccctcctccacctgaaggg 433 ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| Sbjct: 29764605 ccatgggctcctggtggcagtaaattcacaagaaaccctcctccacctaaaggg 29764552 Score = 61.9 bits (31), Expect = 3e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 299 aacctggacgtgatcgataggctcatcgaggatgcggaggcacagcagaggaacttccag 358 |||| ||| |||||||||||||| ||||| |||||||| || ||| | ||||| |||||| Sbjct: 29765387 aacccggatgtgatcgataggcttatcgatgatgcggaagcgcagtacaggaatttccag 29765328 Query: 359 cacccggatccttacattg 377 || || ||||| ||||||| Sbjct: 29765327 catcccgatccctacattg 29765309 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 437 gagattatctacaactatggcaaagaagaccaatgaaca 475 |||||||||||||||||||| ||||||||| ||||||| Sbjct: 29763856 gagattatctacaactatggaaaagaagactgatgaaca 29763818 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 254 gcgtccgagctcagggacaagttcgaggccaacagaaatgtgg 296 ||||| || |||||||| ||||||||||| |||||| |||||| Sbjct: 29765558 gcgtcggatctcagggagaagttcgaggcgaacagagatgtgg 29765516 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gagcggctgcggcggcgaggtcga 128 ||||||| |||||||||||||||| Sbjct: 29361250 gagcggcggcggcggcgaggtcga 29361273
>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_F03 Length = 110783 Score = 196 bits (99), Expect = 7e-47 Identities = 135/147 (91%) Strand = Plus / Minus Query: 106 agcggctgcggcggcgaggtcgatgtcgacgacggcggggtacctggcgcggcgcgcggg 165 |||||| ||||||||| | ||||| ||||| ||||||||| |||||||||||| |||| Sbjct: 63924 agcggcggcggcggcggcggcgatggcgacgtcggcggggttcctggcgcggcgggcggc 63865 Query: 166 gcagaaggagcgggtgcggcttctctaccgccgcgcgctcaaggacaccctcaactgggc 225 |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 63864 gcagaaggagagggtgcggctgctctaccgccgcgccctcaaggacaccctcaactgggc 63805 Query: 226 cgtccaccgccacctcttctaccagga 252 ||||||||||||||||||||||||||| Sbjct: 63804 cgtccaccgccacctcttctaccagga 63778 Score = 83.8 bits (42), Expect = 7e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 380 ccatgggctcctggtggcactaaattcacaaggaaccctcctccacctgaaggg 433 ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| Sbjct: 62735 ccatgggctcctggtggcagtaaattcacaagaaaccctcctccacctaaaggg 62682 Score = 61.9 bits (31), Expect = 3e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 299 aacctggacgtgatcgataggctcatcgaggatgcggaggcacagcagaggaacttccag 358 |||| ||| |||||||||||||| ||||| |||||||| || ||| | ||||| |||||| Sbjct: 63517 aacccggatgtgatcgataggcttatcgatgatgcggaagcgcagtacaggaatttccag 63458 Query: 359 cacccggatccttacattg 377 || || ||||| ||||||| Sbjct: 63457 catcccgatccctacattg 63439 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 437 gagattatctacaactatggcaaagaagaccaatgaaca 475 |||||||||||||||||||| ||||||||| ||||||| Sbjct: 61986 gagattatctacaactatggaaaagaagactgatgaaca 61948 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 254 gcgtccgagctcagggacaagttcgaggccaacagaaatgtgg 296 ||||| || |||||||| ||||||||||| |||||| |||||| Sbjct: 63688 gcgtcggatctcagggagaagttcgaggcgaacagagatgtgg 63646
>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216, complete sequence Length = 95667 Score = 105 bits (53), Expect = 2e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 155 cggcgcgcggggcagaaggagcgggtgcggcttctctaccgccgcgcgctcaaggacacc 214 ||||| |||| ||||||||| ||||| ||| | | ||||||||||| ||||| |||||| Sbjct: 48356 cggcgagcggcgcagaaggaacgggttcggatcttgtaccgccgcgccctcaaagacacc 48415 Query: 215 ctcaactgggccgtccaccgccacctcttctac 247 ||||||||||||||||||||||||||||||||| Sbjct: 48416 ctcaactgggccgtccaccgccacctcttctac 48448
>ref|NM_119636.2| Arabidopsis thaliana catalytic/ oxidoreductase, acting on NADH or NADPH (AT4G34700) mRNA, complete cds Length = 726 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 358 gcacccggatccttacattgttccatgggctcctggtggcactaaattcacaaggaaccc 417 |||||| |||||||| || ||||||||||||||||||||| | || ||| || ||||| Sbjct: 266 gcaccctgatccttatatcgttccatgggctcctggtggctcaaagttctgtagaaaccc 325 Query: 418 tcctccacctgaagggattgagattatctacaactatgg 456 |||| |||| |||||||||||| | ||||||||||| Sbjct: 326 gactccgcctgctgggattgagattgtgtacaactatgg 364
>gb|BT001011.1| Arabidopsis thaliana At4g34700/T4L20_280 mRNA, complete cds Length = 354 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 358 gcacccggatccttacattgttccatgggctcctggtggcactaaattcacaaggaaccc 417 |||||| |||||||| || ||||||||||||||||||||| | || ||| || ||||| Sbjct: 237 gcaccctgatccttatatcgttccatgggctcctggtggctcaaagttctgtagaaaccc 296 Query: 418 tcctccacctgaagggattgagattatctacaactatgg 456 |||| |||| |||||||||||| | ||||||||||| Sbjct: 297 gactccgcctgctgggattgagattgtgtacaactatgg 335
>dbj|AK221137.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-93-A21 Length = 375 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 358 gcacccggatccttacattgttccatgggctcctggtggcactaaattcacaaggaaccc 417 |||||| |||||||| || ||||||||||||||||||||| | || ||| || ||||| Sbjct: 68 gcaccctgatccttatatcgttccatgggctcctggtggctcaaagttctgtagaaaccc 127 Query: 418 tcctccacctgaagggattgagattatctacaactatgg 456 |||| |||| |||||||||||| | ||||||||||| Sbjct: 128 gactccgcctgctgggattgagattgtgtacaactatgg 166
>gb|AF412069.1|AF412069 Arabidopsis thaliana AT4g34700/T4L20_280 mRNA, complete cds Length = 652 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 358 gcacccggatccttacattgttccatgggctcctggtggcactaaattcacaaggaaccc 417 |||||| |||||||| || ||||||||||||||||||||| | || ||| || ||||| Sbjct: 264 gcaccctgatccttatatcgttccatgggctcctggtggctcaaagttctgtagaaaccc 323 Query: 418 tcctccacctgaagggattgagattatctacaactatgg 456 |||| |||| |||||||||||| | ||||||||||| Sbjct: 324 gactccgcctgctgggattgagattgtgtacaactatgg 362
>gb|AY085825.1| Arabidopsis thaliana clone 18715 mRNA, complete sequence Length = 725 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 358 gcacccggatccttacattgttccatgggctcctggtggcactaaattcacaaggaaccc 417 |||||| |||||||| || ||||||||||||||||||||| | || ||| || ||||| Sbjct: 265 gcaccctgatccttatatcgttccatgggctcctggtggctcaaagttctgtagaaaccc 324 Query: 418 tcctccacctgaagggattgagattatctacaactatgg 456 |||| |||| |||||||||||| | ||||||||||| Sbjct: 325 gactccgcctgctgggattgagattgtgtacaactatgg 363
>emb|BX828064.1|CNS0A2X1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH49ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 590 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 358 gcacccggatccttacattgttccatgggctcctggtggcactaaattcacaaggaaccc 417 |||||| |||||||| || ||||||||||||||||||||| | || ||| || ||||| Sbjct: 252 gcaccctgatccttatatcgttccatgggctcctggtggctcaaagttctgtagaaaccc 311 Query: 418 tcctccacctgaagggattgagattatctacaactatgg 456 |||| |||| |||||||||||| | ||||||||||| Sbjct: 312 gactccgcctgctgggattgagattgtgtacaactatgg 350
>dbj|AB077112.1| Prunus persica mRNA, microsatellite marker M7a Length = 626 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 203 ctcaaggacaccctcaactgggccgtccaccgccacctcttctacc 248 ||||| ||||| ||||||||||| || ||||||||||| ||||||| Sbjct: 132 ctcaaagacactctcaactgggctgttcaccgccaccttttctacc 177
>emb|CU024876.6| M.truncatula DNA sequence from clone MTH2-144H1 on chromosome 3, complete sequence Length = 137872 Score = 50.1 bits (25), Expect = 0.010 Identities = 76/93 (81%) Strand = Plus / Minus Query: 155 cggcgcgcggggcagaaggagcgggtgcggcttctctaccgccgcgcgctcaaggacacc 214 |||||||||| ||||| |||| ||| ||| |||| || ||||| || || || ||||| Sbjct: 128444 cggcgcgcggcgcagagggagaaggttcggattctgtatcgccgtgctcttaaagacact 128385 Query: 215 ctcaactgggccgtccaccgccacctcttctac 247 ||||||||||| || || || |||||||||||| Sbjct: 128384 ctcaactgggctgtacatcgtcacctcttctac 128352 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 gttccatgggctcctggtgg 396 |||||||||||||||||||| Sbjct: 127583 gttccatgggctcctggtgg 127564
>emb|AL161415.2|CNS01RH5 Human chromosome 14 DNA sequence BAC R-139D16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 161443 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 accaatgaacaagaattaaaagc 487 ||||||||||||||||||||||| Sbjct: 45312 accaatgaacaagaattaaaagc 45334
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 89 tccggagaagaagaaggagcgg 110 |||||||||||||||||||||| Sbjct: 1632540 tccggagaagaagaaggagcgg 1632519
>emb|AM393062.1| Synthetic construct Homo sapiens mRNA for hypothetical protein (RNF123 gene), clone DKFZp451P244.1E2 Length = 3984 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1453 aggagcggctgcggcggcgag 1473
>ref|NM_001067386.1| Oryza sativa (japonica cultivar-group) Os08g0115200 (Os08g0115200) mRNA, complete cds Length = 1765 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 gggtacctggcgcggcgcgcg 163 ||||||||||||||||||||| Sbjct: 450 gggtacctggcgcggcgcgcg 470
>ref|XM_001164974.1| PREDICTED: Pan troglodytes ring finger protein 123 (RNF123), mRNA Length = 6119 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 3018 aggagcggctgcggcggcgag 3038
>ref|NM_058243.2| Homo sapiens bromodomain containing 4 (BRD4), transcript variant long, mRNA Length = 5198 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gagaagaagaaggagcggctgcggc 117 |||||| |||||||||||||||||| Sbjct: 3967 gagaaggagaaggagcggctgcggc 3991
>ref|XR_013994.1| PREDICTED: Macaca mulatta similar to bromodomain-containing protein 4 isoform long (LOC718195), mRNA Length = 5822 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gagaagaagaaggagcggctgcggc 117 |||||| |||||||||||||||||| Sbjct: 3964 gagaaggagaaggagcggctgcggc 3988
>ref|XM_001106382.1| PREDICTED: Macaca mulatta similar to ring finger protein 123, transcript variant 3 (LOC705340), mRNA Length = 4809 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1738 aggagcggctgcggcggcgag 1758
>ref|XM_001106313.1| PREDICTED: Macaca mulatta similar to ring finger protein 123, transcript variant 2 (LOC705340), mRNA Length = 4610 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1539 aggagcggctgcggcggcgag 1559
>ref|NM_022064.2| Homo sapiens ring finger protein 123 (RNF123), mRNA Length = 4272 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1519 aggagcggctgcggcggcgag 1539
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gcgcggcgcgcggggcagaag 172 ||||||||||||||||||||| Sbjct: 1297462 gcgcggcgcgcggggcagaag 1297442
>gb|AY744152.1| Homo sapiens ubiquitin ligase (KPC1) mRNA, complete cds Length = 4183 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1460 aggagcggctgcggcggcgag 1480
>ref|XM_865372.1| PREDICTED: Bos taurus similar to bromodomain-containing protein 4 isoform long (LOC614048), mRNA Length = 2658 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gagaagaagaaggagcggctgcggc 117 |||||| |||||||||||||||||| Sbjct: 1021 gagaaggagaaggagcggctgcggc 1045
>ref|XM_657147.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4635.2), mRNA Length = 1998 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgatgtcgacgacggcggggt 146 ||||||||||||||||||||| Sbjct: 905 cgatgtcgacgacggcggggt 925
>gb|BC057392.1| Homo sapiens ring finger protein 123, mRNA (cDNA clone IMAGE:6174547), partial cds Length = 3017 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 267 aggagcggctgcggcggcgag 287
>gb|AF370367.1| Homo sapiens FP1477 mRNA, complete cds Length = 3502 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 732 aggagcggctgcggcggcgag 752
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 34425 aggagcggctgcggcggcgag 34405
>dbj|AK090632.1| Homo sapiens cDNA FLJ33313 fis, clone BNGH42006135 Length = 3352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 619 aggagcggctgcggcggcgag 639
>dbj|AK096353.1| Homo sapiens cDNA FLJ39034 fis, clone NT2RP7008085 Length = 4226 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1491 aggagcggctgcggcggcgag 1511
>gb|AC162857.5| Mus musculus chromosome 15, clone RP23-333C11, complete sequence Length = 224913 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 accaatgaacaagaattaaaa 485 ||||||||||||||||||||| Sbjct: 197203 accaatgaacaagaattaaaa 197183
>gb|BC041145.1| Homo sapiens ring finger protein 123, mRNA (cDNA clone IMAGE:6070768), partial cds Length = 2860 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 110 aggagcggctgcggcggcgag 130
>gb|AE005835.1| Caulobacter crescentus CB15 section 161 of 359 of the complete genome Length = 10301 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 150 tggcgcggcgcgcggggcagaaggagcgg 178 |||||||||||| ||||||||||| |||| Sbjct: 6599 tggcgcggcgcggggggcagaaggggcgg 6627
>gb|BC112900.1| Homo sapiens cDNA clone IMAGE:3909203, containing frame-shift errors Length = 4544 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1544 aggagcggctgcggcggcgag 1564
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 agaaggagcggctgcggcggcgagg 124 ||||| ||||||||||||||||||| Sbjct: 104461 agaagaagcggctgcggcggcgagg 104485
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 agaaggagcggctgcggcggcgagg 124 ||||| ||||||||||||||||||| Sbjct: 19271920 agaagaagcggctgcggcggcgagg 19271896
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 gggtacctggcgcggcgcgcg 163 ||||||||||||||||||||| Sbjct: 790608 gggtacctggcgcggcgcgcg 790588
>gb|AF386649.1|AF386649 Homo sapiens bromodomain-containing 4 (BRD4) mRNA, complete cds Length = 5198 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gagaagaagaaggagcggctgcggc 117 |||||| |||||||||||||||||| Sbjct: 3967 gagaaggagaaggagcggctgcggc 3991
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 ggcgcggcgcgcggggcagaa 171 ||||||||||||||||||||| Sbjct: 1253258 ggcgcggcgcgcggggcagaa 1253238
>gb|AC004798.1|AC004798 Homo sapiens chromosome 19, cosmid R31546, complete sequence Length = 42497 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 gagaagaagaaggagcggctgcggc 117 |||||| |||||||||||||||||| Sbjct: 4032 gagaaggagaaggagcggctgcggc 4008
>gb|BC008354.1|BC008354 Homo sapiens, Similar to bromodomain-containing 4, clone IMAGE:3542455, mRNA, partial cds Length = 1534 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 gagaagaagaaggagcggctgcggc 117 |||||| |||||||||||||||||| Sbjct: 199 gagaaggagaaggagcggctgcggc 223
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82 Length = 195165 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 gttccatgggctcctggtggc 397 ||||||||||||||||||||| Sbjct: 12945 gttccatgggctcctggtggc 12965
>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project) Length = 125502 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 gttccatgggctcctggtggc 397 ||||||||||||||||||||| Sbjct: 94177 gttccatgggctcctggtggc 94197
>gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175946 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 118630 aggagcggctgcggcggcgag 118650
>emb|CR859014.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1513 (from clone DKFZp469L1513) Length = 4272 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1521 aggagcggctgcggcggcgag 1541
>gb|AC102408.10| Mus musculus chromosome 15, clone RP24-351C14, complete sequence Length = 190773 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 accaatgaacaagaattaaaa 485 ||||||||||||||||||||| Sbjct: 88050 accaatgaacaagaattaaaa 88070
>emb|CR627051.1| Homo sapiens mRNA; cDNA DKFZp686C2222 (from clone DKFZp686C2222) Length = 5902 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 2085 aggagcggctgcggcggcgag 2105
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 gggtacctggcgcggcgcgcg 163 ||||||||||||||||||||| Sbjct: 89828 gggtacctggcgcggcgcgcg 89808
>ref|XM_959887.1| Neurospora crassa OR74A hypothetical protein (NCU03121.1) partial mRNA Length = 2727 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 98 gaagaaggagcggctgcggcggcga 122 |||||||||||||| |||||||||| Sbjct: 1592 gaagaaggagcggcggcggcggcga 1568
>ref|XM_953961.1| Neurospora crassa OR74A hypothetical protein (NCU07541.1) partial mRNA Length = 1728 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gaaggagcggctgcggcggcg 121 ||||||||||||||||||||| Sbjct: 1029 gaaggagcggctgcggcggcg 1009
>dbj|AK106318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E03, full insert sequence Length = 2977 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gcggctgcggcggcgaggtcg 127 ||||||||||||||||||||| Sbjct: 2151 gcggctgcggcggcgaggtcg 2131
>dbj|AK100461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091O18, full insert sequence Length = 1767 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 gggtacctggcgcggcgcgcg 163 ||||||||||||||||||||| Sbjct: 452 gggtacctggcgcggcgcgcg 472
>emb|AL832138.1|HSM803445 Homo sapiens mRNA; cDNA DKFZp686M2210 (from clone DKFZp686M2210) Length = 4675 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1514 aggagcggctgcggcggcgag 1534
>emb|AL832034.1|HSM803341 Homo sapiens mRNA; cDNA DKFZp451P244 (from clone DKFZp451P244) Length = 4284 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1539 aggagcggctgcggcggcgag 1559
>emb|AL832344.1|HSM803652 Homo sapiens mRNA; cDNA DKFZp451N085 (from clone DKFZp451N085) Length = 4263 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgag 123 ||||||||||||||||||||| Sbjct: 1516 aggagcggctgcggcggcgag 1536
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 gcggcggcgaggtcgatgtcgacg 136 |||||| ||||||||||||||||| Sbjct: 1006427 gcggcgtcgaggtcgatgtcgacg 1006450
>gb|DQ245308.1| Zea mays clone 14378 mRNA sequence Length = 768 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 agagaaactccggagaagaagaag 104 ||||||||||| |||||||||||| Sbjct: 38 agagaaactccagagaagaagaag 61
>gb|DQ244160.1| Zea mays clone 2657 mRNA sequence Length = 795 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 tgcggcggcgaggtcgatgtcgac 135 ||||||||||| |||||||||||| Sbjct: 470 tgcggcggcgacgtcgatgtcgac 493
>ref|XM_001228480.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_10554) mRNA, complete cds Length = 2790 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 cgaggtcgatgtcgacgacggcgg 143 ||||||||||| |||||||||||| Sbjct: 118 cgaggtcgatgccgacgacggcgg 95
>ref|NM_001066805.1| Oryza sativa (japonica cultivar-group) Os07g0615500 (Os07g0615500) mRNA, complete cds Length = 831 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/35 (91%), Gaps = 2/35 (5%) Strand = Plus / Plus Query: 90 ccggagaagaagaaggagcggctgcggcggcgagg 124 ||||||||||||||||| ||| |||||||||||| Sbjct: 536 ccggagaagaagaagga--ggcggcggcggcgagg 568
>ref|NM_001065059.1| Oryza sativa (japonica cultivar-group) Os06g0707100 (Os06g0707100) mRNA, partial cds Length = 3273 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gagcggctgcggcggcgaggtcga 128 ||||||| |||||||||||||||| Sbjct: 53 gagcggcggcggcggcgaggtcga 76
>ref|NM_001058970.1| Oryza sativa (japonica cultivar-group) Os04g0310500 (Os04g0310500) mRNA, complete cds Length = 5279 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 agaagaagaaggagcggctgcggcggcg 121 ||||||||||| |||||| ||||||||| Sbjct: 211 agaagaagaagaagcggcggcggcggcg 238
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cggcgaggtcgatgtcgacg 136 |||||||||||||||||||| Sbjct: 311665 cggcgaggtcgatgtcgacg 311646
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 cttgctttcacttttccagatgat 535 |||||||||||| ||||||||||| Sbjct: 11972482 cttgctttcactattccagatgat 11972459
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cggcggcgaggtcgatgtcg 133 |||||||||||||||||||| Sbjct: 4863437 cggcggcgaggtcgatgtcg 4863418
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gcggctgcggcggcgaggtc 126 |||||||||||||||||||| Sbjct: 7143026 gcggctgcggcggcgaggtc 7143007
>emb|AM261282.1| IncP-1 plasmid pKJK5 complete sequence Length = 54383 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gctcatcgaggatgcggagg 338 |||||||||||||||||||| Sbjct: 3091 gctcatcgaggatgcggagg 3072
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cgctcaaggacaccctcaac 220 |||||||||||||||||||| Sbjct: 1234926 cgctcaaggacaccctcaac 1234907
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 caacagaaatgtggagaacc 302 |||||||||||||||||||| Sbjct: 948691 caacagaaatgtggagaacc 948672
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 aatgaacaagaattaaaagcctgg 491 ||||||||||||||||||| |||| Sbjct: 3274251 aatgaacaagaattaaaagactgg 3274228
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 aatgaacaagaattaaaagcctgg 491 ||||||||||||||||||| |||| Sbjct: 3274421 aatgaacaagaattaaaagactgg 3274398
>ref|XM_499974.1| Yarrowia lipolytica CLIB122, YALI0A11198g predicted mRNA Length = 2226 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ggagaagaagaaggagcggc 111 |||||||||||||||||||| Sbjct: 935 ggagaagaagaaggagcggc 916
>gb|AY295878.1| Xanthomonas axonopodis pv. citri strain XW47 succinyl-CoA synthetase beta subunit (sucC) gene, partial cds; protein kinase (pilS) and response regulator (pilR) genes, complete cds; and pilus biogenesis protein (pilB) gene, partial cds Length = 4274 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ggcgaggtcgatgtcgacgacggc 141 |||| ||||||||||||||||||| Sbjct: 3763 ggcggggtcgatgtcgacgacggc 3740
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggcgaggtcgatgtcgacgacggc 141 |||| ||||||||||||||||||| Sbjct: 1613285 ggcggggtcgatgtcgacgacggc 1613308
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 agaagaaggagcggctgcggcggc 120 |||||||||||||||||| ||||| Sbjct: 1905281 agaagaaggagcggctgcagcggc 1905258
>gb|AE011969.1| Xanthomonas axonopodis pv. citri str. 306, section 347 of 469 of the complete genome Length = 10902 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ggcgaggtcgatgtcgacgacggc 141 |||| ||||||||||||||||||| Sbjct: 7279 ggcggggtcgatgtcgacgacggc 7256
>gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 186714 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 cttgctttcacttttccagatgat 535 |||||||||||| ||||||||||| Sbjct: 24803 cttgctttcactattccagatgat 24826
>emb|AL353738.16| Human DNA sequence from clone RP11-206H15 on chromosome 13, complete sequence Length = 124406 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 cttttatcatggatgttgta 624 |||||||||||||||||||| Sbjct: 32453 cttttatcatggatgttgta 32472
>gb|AC023690.3| Drosophila melanogaster X BAC RP98-6M20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 176233 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 cttgctttcacttttccagatgat 535 |||||||||||| ||||||||||| Sbjct: 19873 cttgctttcactattccagatgat 19850
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/35 (91%), Gaps = 2/35 (5%) Strand = Plus / Minus Query: 90 ccggagaagaagaaggagcggctgcggcggcgagg 124 ||||||||||||||||| ||| |||||||||||| Sbjct: 25310288 ccggagaagaagaagga--ggcggcggcggcgagg 25310256
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 94 agaagaagaaggagcggctgcggcggcg 121 ||||||||||| |||||| ||||||||| Sbjct: 14120180 agaagaagaagaagcggcggcggcggcg 14120153
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggagaagaagaaggagcgg 110 |||||||||||||||||||| Sbjct: 22893725 cggagaagaagaaggagcgg 22893706 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcggctgcggcggcgaggt 125 |||||||||||||||||||| Sbjct: 30334681 agcggctgcggcggcgaggt 30334662
>gb|AC109136.1| Homo sapiens chromosome 16 clone RP11-629D22, complete sequence Length = 183080 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gctttcacttttccagatga 534 |||||||||||||||||||| Sbjct: 40495 gctttcacttttccagatga 40476
>emb|AL157762.13| Human DNA sequence from clone RP11-153I24 on chromosome 13q33.1-34 Contains the LIG4 gene for ligase IV, DNA, ATP-dependent, a novel gene (FLJ14906), the TNFSF13B gene for tumor necrosis factor (ligand) superfamily, member 13b and a CpG island, complete sequence Length = 185229 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 ttaagaacaaaataaaatta 583 |||||||||||||||||||| Sbjct: 156169 ttaagaacaaaataaaatta 156150
>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3 Contains the 3' end of gene for plasticity related gene 1 (PRG), complete sequence Length = 68858 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 562 tgttaagaacaaaataaaattact 585 ||||||||||||||| |||||||| Sbjct: 55599 tgttaagaacaaaattaaattact 55622
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggagaagaagaaggagcgg 110 |||||||||||||||||||| Sbjct: 97282 cggagaagaagaaggagcgg 97263
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcggctgcggcggcgaggt 125 |||||||||||||||||||| Sbjct: 123000 agcggctgcggcggcgaggt 122981
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agcggctgcggcggcgaggt 125 |||||||||||||||||||| Sbjct: 20408 agcggctgcggcggcgaggt 20389
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 aggagcggctgcggcggcgaggtc 126 ||||||||||||||| |||||||| Sbjct: 509705 aggagcggctgcggcagcgaggtc 509682
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 agaagaagaaggagcggctgcggcggcg 121 ||||||||||| |||||| ||||||||| Sbjct: 52767 agaagaagaagaagcggcggcggcggcg 52794
>emb|AL360354.1|VYIVD10 Plasmodium vivax telomeric YAC clone, complete finished sequence Length = 155711 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 atgaacaagaattaaaagcc 488 |||||||||||||||||||| Sbjct: 25851 atgaacaagaattaaaagcc 25870
>emb|AJ297529.2|PST297529 Pseudomonas stutzeri nif operon and flanking genes, strain A15101 Length = 24798 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gtacctggcgcggcgcgcggggca 168 ||||| |||||||||||||||||| Sbjct: 19552 gtacccggcgcggcgcgcggggca 19575
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cggagaagaagaaggagcggctgc 114 |||||||||||||| ||||||||| Sbjct: 1785599 cggagaagaagaagcagcggctgc 1785576
>gb|AC013274.6| Homo sapiens BAC clone RP11-449J2 from 2, complete sequence Length = 125133 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 taagaacaaaataaaattac 584 |||||||||||||||||||| Sbjct: 30038 taagaacaaaataaaattac 30019
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gagcggctgcggcggcgaggtcga 128 ||||||| |||||||||||||||| Sbjct: 72131 gagcggcggcggcggcgaggtcga 72154
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gagcggctgcggcggcgaggtcga 128 ||||||| |||||||||||||||| Sbjct: 124048 gagcggcggcggcggcgaggtcga 124071
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/35 (91%), Gaps = 2/35 (5%) Strand = Plus / Minus Query: 90 ccggagaagaagaaggagcggctgcggcggcgagg 124 ||||||||||||||||| ||| |||||||||||| Sbjct: 126959 ccggagaagaagaagga--ggcggcggcggcgagg 126927
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/35 (91%), Gaps = 2/35 (5%) Strand = Plus / Minus Query: 90 ccggagaagaagaaggagcggctgcggcggcgagg 124 ||||||||||||||||| ||| |||||||||||| Sbjct: 3378 ccggagaagaagaagga--ggcggcggcggcgagg 3346
>dbj|AK121577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036J18, full insert sequence Length = 659 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 agaagaagaaggagcggctgcggcggcg 121 ||||||||||| |||||| ||||||||| Sbjct: 50 agaagaagaagaagcggcggcggcggcg 77
>dbj|AK121249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101B10, full insert sequence Length = 5281 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 agaagaagaaggagcggctgcggcggcg 121 ||||||||||| |||||| ||||||||| Sbjct: 212 agaagaagaagaagcggcggcggcggcg 239
>dbj|AK108210.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D09, full insert sequence Length = 831 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/35 (91%), Gaps = 2/35 (5%) Strand = Plus / Plus Query: 90 ccggagaagaagaaggagcggctgcggcggcgagg 124 ||||||||||||||||| ||| |||||||||||| Sbjct: 536 ccggagaagaagaagga--ggcggcggcggcgagg 568
>dbj|AK066647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074A05, full insert sequence Length = 3273 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gagcggctgcggcggcgaggtcga 128 ||||||| |||||||||||||||| Sbjct: 53 gagcggcggcggcggcgaggtcga 76
>dbj|AK063780.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D06, full insert sequence Length = 668 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 agaagaagaaggagcggctgcggcggcg 121 ||||||||||| |||||| ||||||||| Sbjct: 59 agaagaagaagaagcggcggcggcggcg 86
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggcgaggtcgatgtcgacgacggc 141 |||| ||||||||||||||||||| Sbjct: 1631114 ggcggggtcgatgtcgacgacggc 1631137
>emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 in linkage group 3, complete sequence Length = 170200 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 actgagctgctgtatgattg 563 |||||||||||||||||||| Sbjct: 17043 actgagctgctgtatgattg 17062
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ggagaagaagaaggagcggc 111 |||||||||||||||||||| Sbjct: 1172434 ggagaagaagaaggagcggc 1172415
>dbj|AB070949.1| Streptomyces avermitilis polyene macrolide biosynthetic gene cluster Length = 78210 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 aggagcggctgcggcggcgaggtc 126 ||||||||||||||| |||||||| Sbjct: 55153 aggagcggctgcggcagcgaggtc 55176 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 123,223,235 Number of extensions: 8122044 Number of successful extensions: 192572 Number of sequences better than 10.0: 113 Number of HSP's gapped: 192563 Number of HSP's successfully gapped: 125 Length of query: 639 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 617 Effective length of database: 18,508,616,841 Effective search space: 11419816590897 Effective search space used: 11419816590897 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)