ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf146f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000384.1| Mycobacterium sp. MCS, complete genome 46 0.17
2gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 2.6
3gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Ho... 42 2.6
4gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, comp... 42 2.6
5dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 2.6
6emb|CT030255.8| Mouse DNA sequence from clone RP23-267P22 on chr... 42 2.6
7gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, compl... 42 2.6
8gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 2.6

>gb|CP000384.1| Mycobacterium sp. MCS, complete genome
          Length = 5705448
 Score = 46.1 bits (23), Expect = 0.17
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 189     gccgcagccaccactcgctccccgtcc 215
               ||||| |||||||||||||||||||||
Sbjct: 4695951 gccgccgccaccactcgctccccgtcc 4695977



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 358     gccgaggaagacgccaaggcg 378
               |||||||||||||||||||||
Sbjct: 4207531 gccgaggaagacgccaaggcg 4207511



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>gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 150308

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 555    gactgtatctggttaatctcc 575
              |||||||||||||||||||||
Sbjct: 129633 gactgtatctggttaatctcc 129653



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>gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, complete sequence
          Length = 173087

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 280    atgtccatcagcacagctgtc 300
              |||||||||||||||||||||
Sbjct: 104182 atgtccatcagcacagctgtc 104202



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 344     aagccgacgccaaagccgaggaaga 368
               ||||||||||||||||||| |||||
Sbjct: 1940510 aagccgacgccaaagccgacgaaga 1940534



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>emb|CT030255.8| Mouse DNA sequence from clone RP23-267P22 on chromosome 16, complete
            sequence
          Length = 178284

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 16   tcccaccttttcccctctccc 36
            |||||||||||||||||||||
Sbjct: 3245 tcccaccttttcccctctccc 3225



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>gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, complete sequence
          Length = 150101

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   atgtccatcagcacagctgtc 300
             |||||||||||||||||||||
Sbjct: 20892 atgtccatcagcacagctgtc 20912



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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 355     aaagccgaggaagacgccaag 375
               |||||||||||||||||||||
Sbjct: 4481313 aaagccgaggaagacgccaag 4481293


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 93,434,480
Number of extensions: 4661311
Number of successful extensions: 87947
Number of sequences better than 10.0: 8
Number of HSP's gapped: 87947
Number of HSP's successfully gapped: 8
Length of query: 698
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 676
Effective length of database: 18,508,616,841
Effective search space: 12511824984516
Effective search space used: 12511824984516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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