ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf148k12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056363.1| Oryza sativa (japonica cultivar-group) Os03g0296300 (Os03g0296300) mRNA, partial cds Length = 1211 Score = 373 bits (188), Expect = e-100 Identities = 341/392 (86%) Strand = Plus / Plus Query: 150 gccagagggcagcggtggagccgctccagctgccaacgccggaggagatcaaggggcagg 209 |||||| ||| | |||||||||| ||| | |||| ||||||||||||||||||||||||| Sbjct: 278 gccagacggccgtggtggagccgatccggttgccgacgccggaggagatcaaggggcagg 337 Query: 210 agatgatgaacaactgtgccgtccggagcgtcctcagtggtgtcatggggggtggtcttg 269 | || ||||||||| |||||||| |||||| ||||||| ||||||||||||||| | | Sbjct: 338 acatctggaacaactgcgccgtccgcagcgtcgtcagtggagtcatggggggtggtttag 397 Query: 270 gtgtacttatgggactattttttggagctttggaaaacccaataatgcaagaggagatga 329 | || |||||||| ||||| ||||||||||||||||||||||| | ||||||||||| Sbjct: 398 gcgtgcttatggggctattctttggagctttggaaaacccaattacagcagaggagatga 457 Query: 330 cagcaaggcaacaaatagtctaccaggcaaaacagatgggtagaaaaagtatgagccatg 389 ||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||| ||| Sbjct: 458 cagcaagacaacaaatagtataccaagctaaacagatgggtaggcgaagtataagcaatg 517 Query: 390 ctaagacctttgcagtaatgggcttgattttctctgcagctgaatgcgtcgtagagaagg 449 | || ||||||||||| |||||| ||||||||||||| |||||||| ||| ||||||||| Sbjct: 518 ccaaaacctttgcagtcatgggcctgattttctctgccgctgaatgtgtcatagagaagg 577 Query: 450 ctcgggcaaagcatgacattaccaattcggcagtagctggctgtgtcacgggaggggctt 509 |||| ||||||||||||| ||||||||| || || |||||||||||||| |||||||||| Sbjct: 578 ctcgcgcaaagcatgacactaccaattcagcggtggctggctgtgtcacaggaggggctt 637 Query: 510 tagctgcaaaaggtggccctcaagcttcatgt 541 |||||||||||||||| ||| ||||| ||||| Sbjct: 638 tagctgcaaaaggtggtcctaaagctacatgt 669
>dbj|AK100042.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152C17, full insert sequence Length = 1212 Score = 373 bits (188), Expect = e-100 Identities = 341/392 (86%) Strand = Plus / Plus Query: 150 gccagagggcagcggtggagccgctccagctgccaacgccggaggagatcaaggggcagg 209 |||||| ||| | |||||||||| ||| | |||| ||||||||||||||||||||||||| Sbjct: 279 gccagacggccgtggtggagccgatccggttgccgacgccggaggagatcaaggggcagg 338 Query: 210 agatgatgaacaactgtgccgtccggagcgtcctcagtggtgtcatggggggtggtcttg 269 | || ||||||||| |||||||| |||||| ||||||| ||||||||||||||| | | Sbjct: 339 acatctggaacaactgcgccgtccgcagcgtcgtcagtggagtcatggggggtggtttag 398 Query: 270 gtgtacttatgggactattttttggagctttggaaaacccaataatgcaagaggagatga 329 | || |||||||| ||||| ||||||||||||||||||||||| | ||||||||||| Sbjct: 399 gcgtgcttatggggctattctttggagctttggaaaacccaattacagcagaggagatga 458 Query: 330 cagcaaggcaacaaatagtctaccaggcaaaacagatgggtagaaaaagtatgagccatg 389 ||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||| ||| Sbjct: 459 cagcaagacaacaaatagtataccaagctaaacagatgggtaggcgaagtataagcaatg 518 Query: 390 ctaagacctttgcagtaatgggcttgattttctctgcagctgaatgcgtcgtagagaagg 449 | || ||||||||||| |||||| ||||||||||||| |||||||| ||| ||||||||| Sbjct: 519 ccaaaacctttgcagtcatgggcctgattttctctgccgctgaatgtgtcatagagaagg 578 Query: 450 ctcgggcaaagcatgacattaccaattcggcagtagctggctgtgtcacgggaggggctt 509 |||| ||||||||||||| ||||||||| || || |||||||||||||| |||||||||| Sbjct: 579 ctcgcgcaaagcatgacactaccaattcagcggtggctggctgtgtcacaggaggggctt 638 Query: 510 tagctgcaaaaggtggccctcaagcttcatgt 541 |||||||||||||||| ||| ||||| ||||| Sbjct: 639 tagctgcaaaaggtggtcctaaagctacatgt 670
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 168 bits (85), Expect = 2e-38 Identities = 166/193 (86%) Strand = Plus / Minus Query: 257 gggggtggtcttggtgtacttatgggactattttttggagctttggaaaacccaataatg 316 ||||||||| | || || |||||||| ||||| ||||||||||||||||||||||| | Sbjct: 55883 gggggtggtttaggcgtgcttatggggctattctttggagctttggaaaacccaattaca 55824 Query: 317 caagaggagatgacagcaaggcaacaaatagtctaccaggcaaaacagatgggtagaaaa 376 |||||||||||||||||| ||||||||||| ||||| || |||||||||||||| | Sbjct: 55823 gcagaggagatgacagcaagacaacaaatagtataccaagctaaacagatgggtaggcga 55764 Query: 377 agtatgagccatgctaagacctttgcagtaatgggcttgattttctctgcagctgaatgc 436 ||||| ||| |||| || ||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 55763 agtataagcaatgccaaaacctttgcagtcatgggcctgattttctctgccgctgaatgt 55704 Query: 437 gtcgtagagaagg 449 ||| ||||||||| Sbjct: 55703 gtcatagagaagg 55691 Score = 105 bits (53), Expect = 3e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 447 aggctcgggcaaagcatgacattaccaattcggcagtagctggctgtgtcacgggagggg 506 ||||||| ||||||||||||| ||||||||| || || |||||||||||||| ||||||| Sbjct: 55615 aggctcgcgcaaagcatgacactaccaattcagcggtggctggctgtgtcacaggagggg 55556 Query: 507 ctttagctgcaaaaggt 523 ||||||||||||||||| Sbjct: 55555 ctttagctgcaaaaggt 55539 Score = 97.6 bits (49), Expect = 6e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 150 gccagagggcagcggtggagccgctccagctgccaacgccggaggagatcaaggggcagg 209 |||||| ||| | |||||||||| ||| | |||| ||||||||||||||||||||||||| Sbjct: 57767 gccagacggccgtggtggagccgatccggttgccgacgccggaggagatcaaggggcagg 57708 Query: 210 agatgatgaacaactgtgccgtccggagcgtcctcagtggtgtcatggg 258 | || ||||||||| |||||||| |||||| ||||||| |||||||| Sbjct: 57707 acatctggaacaactgcgccgtccgcagcgtcgtcagtggagtcatggg 57659
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 168 bits (85), Expect = 2e-38 Identities = 166/193 (86%) Strand = Plus / Minus Query: 257 gggggtggtcttggtgtacttatgggactattttttggagctttggaaaacccaataatg 316 ||||||||| | || || |||||||| ||||| ||||||||||||||||||||||| | Sbjct: 10340518 gggggtggtttaggcgtgcttatggggctattctttggagctttggaaaacccaattaca 10340459 Query: 317 caagaggagatgacagcaaggcaacaaatagtctaccaggcaaaacagatgggtagaaaa 376 |||||||||||||||||| ||||||||||| ||||| || |||||||||||||| | Sbjct: 10340458 gcagaggagatgacagcaagacaacaaatagtataccaagctaaacagatgggtaggcga 10340399 Query: 377 agtatgagccatgctaagacctttgcagtaatgggcttgattttctctgcagctgaatgc 436 ||||| ||| |||| || ||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 10340398 agtataagcaatgccaaaacctttgcagtcatgggcctgattttctctgccgctgaatgt 10340339 Query: 437 gtcgtagagaagg 449 ||| ||||||||| Sbjct: 10340338 gtcatagagaagg 10340326 Score = 105 bits (53), Expect = 3e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 447 aggctcgggcaaagcatgacattaccaattcggcagtagctggctgtgtcacgggagggg 506 ||||||| ||||||||||||| ||||||||| || || |||||||||||||| ||||||| Sbjct: 10340250 aggctcgcgcaaagcatgacactaccaattcagcggtggctggctgtgtcacaggagggg 10340191 Query: 507 ctttagctgcaaaaggt 523 ||||||||||||||||| Sbjct: 10340190 ctttagctgcaaaaggt 10340174 Score = 97.6 bits (49), Expect = 6e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 150 gccagagggcagcggtggagccgctccagctgccaacgccggaggagatcaaggggcagg 209 |||||| ||| | |||||||||| ||| | |||| ||||||||||||||||||||||||| Sbjct: 10342402 gccagacggccgtggtggagccgatccggttgccgacgccggaggagatcaaggggcagg 10342343 Query: 210 agatgatgaacaactgtgccgtccggagcgtcctcagtggtgtcatggg 258 | || ||||||||| |||||||| |||||| ||||||| |||||||| Sbjct: 10342342 acatctggaacaactgcgccgtccgcagcgtcgtcagtggagtcatggg 10342294
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 97.6 bits (49), Expect = 6e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 150 gccagagggcagcggtggagccgctccagctgccaacgccggaggagatcaaggggcagg 209 |||||| ||| | |||||||||| ||| | |||| ||||||||||||||||||||||||| Sbjct: 854 gccagacggccgtggtggagccgatccggttgccgacgccggaggagatcaaggggcagg 795 Query: 210 agatgatgaacaactgtgccgtccggagcgtcctcagtggtgtcatggg 258 | || ||||||||| |||||||| |||||| ||||||| |||||||| Sbjct: 794 acatctggaacaactgcgccgtccgcagcgtcgtcagtggagtcatggg 746
>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence Length = 194631 Score = 44.1 bits (22), Expect = 0.84 Identities = 25/26 (96%) Strand = Plus / Minus Query: 556 ttttggtgccttctctgtggctattg 581 |||||||||||||||||||| ||||| Sbjct: 112819 ttttggtgccttctctgtggttattg 112794
>gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Genome Systems Human BAC Library) complete sequence Length = 157981 Score = 44.1 bits (22), Expect = 0.84 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 ttctcctccaaccccattcattgcctttcc 46 ||||||||||||||||||| |||| ||||| Sbjct: 42764 ttctcctccaaccccattctttgcttttcc 42793
>gb|AC138681.3| Homo sapiens chromosome 8, clone RP13-41K17, complete sequence Length = 28800 Score = 44.1 bits (22), Expect = 0.84 Identities = 22/22 (100%) Strand = Plus / Plus Query: 729 ctatattatttctccagtctgt 750 |||||||||||||||||||||| Sbjct: 3084 ctatattatttctccagtctgt 3105
>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence Length = 199088 Score = 44.1 bits (22), Expect = 0.84 Identities = 25/26 (96%) Strand = Plus / Plus Query: 556 ttttggtgccttctctgtggctattg 581 |||||||||||||||||||| ||||| Sbjct: 22266 ttttggtgccttctctgtggttattg 22291
>gb|AC169833.4| Rhesus Macaque BAC CH250-207J10 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 187311 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 ctctgtggctattgagaagtt 588 ||||||||||||||||||||| Sbjct: 43962 ctctgtggctattgagaagtt 43942
>gb|AC073326.6| Homo sapiens BAC clone RP11-358A10 from 7, complete sequence Length = 160629 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 729 ctatattatttctccagtctg 749 ||||||||||||||||||||| Sbjct: 11126 ctatattatttctccagtctg 11146
>gb|U23170.2| Caenorhabditis elegans cosmid F58F12, complete sequence Length = 22625 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 gccgctccagctgccaacgcc 189 ||||||||||||||||||||| Sbjct: 9852 gccgctccagctgccaacgcc 9872
>ref|NM_062885.3| Caenorhabditis elegans F58F12.1 (F58F12.1) mRNA, complete cds Length = 730 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 gccgctccagctgccaacgcc 189 ||||||||||||||||||||| Sbjct: 71 gccgctccagctgccaacgcc 91
>emb|AL772371.3| Mouse DNA sequence from clone RP23-234N12 on chromosome 4, complete sequence Length = 237282 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 712 tccatggcactgagtagctatatta 736 |||||||||||||||||||| |||| Sbjct: 108367 tccatggcactgagtagctacatta 108391 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 152,393,607 Number of extensions: 7978332 Number of successful extensions: 202576 Number of sequences better than 10.0: 14 Number of HSP's gapped: 202572 Number of HSP's successfully gapped: 18 Length of query: 880 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 858 Effective length of database: 18,508,616,841 Effective search space: 15880393249578 Effective search space used: 15880393249578 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
