ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf141b15 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g41220:12012.t03799:unspliced-genomic ubiquitin-conjugating enzyme spm2, putative, expressed| Length = 2285 Score = 93.2 bits (197), Expect(3) = 2e-50 Identities = 34/49 (69%), Positives = 44/49 (89%) Frame = +1 / +3 Query: 31 VTVPRNFRLLEELDKGEKGIGDGSVSYGLENPEDVYLSSWIGTIIGAPN 177 ++VPRNFRLLEEL++GEKGIGDGSVSYG+++ +D+Y+ SW GTIIG N Sbjct: 1323 ISVPRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHN 1469 Score = 76.2 bits (160), Expect(3) = 2e-50 Identities = 30/47 (63%), Positives = 37/47 (78%) Frame = +1 / +1 Query: 304 VEPSKFSILSQWKNSYTIETILVELRREMAASHNRKLPQPPEGANF* 444 V+ KFS+LS W+ YT+E IL +L++EMAASHNRKL QPPEG F* Sbjct: 1810 VDQRKFSLLSNWRREYTMEAILTQLKKEMAASHNRKLVQPPEGTFF* 1950 Score = 73.5 bits (154), Expect(3) = 2e-50 Identities = 26/48 (54%), Positives = 35/48 (72%) Frame = +1 / +3 Query: 178 TPHDGRIYSLSIFCGDQYPNKAPSVKFRSKVNLTCVNQANGVVEPSKF 321 T H+GRIY L +FC YP++ P+VKF S++N+TCVN NG+V KF Sbjct: 1593 TVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLV*HEKF 1736 Score = 34.1 bits (68), Expect = 0.78 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 / +2 Query: 213 FLWRSIPKQGPFCQI*IKGQPYMCQPSQW 299 FL + +P+Q C+I +K Q +C+P +W Sbjct: 1628 FLRQGLPRQATNCKISLKNQHDLCKPREW 1714
>LOC_Os09g12570:12009.t01046:unspliced-genomic ubiquitin-conjugating enzyme spm2, putative, expressed| Length = 3073 Score = 90.0 bits (190), Expect(3) = 2e-44 Identities = 33/47 (70%), Positives = 42/47 (89%) Frame = +1 / +3 Query: 37 VPRNFRLLEELDKGEKGIGDGSVSYGLENPEDVYLSSWIGTIIGAPN 177 VPRNFRLLEEL++GEKGIGDG+VSYG+++ +D+Y+ SW GTIIG N Sbjct: 1803 VPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHN 1943 Score = 67.5 bits (141), Expect(3) = 2e-44 Identities = 26/47 (55%), Positives = 34/47 (72%) Frame = +1 / +3 Query: 304 VEPSKFSILSQWKNSYTIETILVELRREMAASHNRKLPQPPEGANF* 444 V+ KF +L+ W+ YT+ETIL +L++EMA NRKL QPPEG F* Sbjct: 2574 VDSRKFGVLANWQREYTMETILTQLKKEMATPQNRKLVQPPEGTFF* 2714 Score = 66.1 bits (138), Expect(3) = 2e-44 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +1 / +2 Query: 184 HDGRIYSLSIFCGDQYPNKAPSVKFRSKVNLTCVNQANGVV 306 H+GRIY L +FC YP K PSV+F S++N++CVN G V Sbjct: 2360 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAV 2482
>LOC_Os03g50440:12003.t04385:unspliced-genomic ubiquitin-conjugating enzyme E2 variant 1, putative, expressed| Length = 5355 Score = 94.1 bits (199), Expect(3) = 5e-44 Identities = 34/47 (72%), Positives = 43/47 (91%) Frame = +1 / +2 Query: 37 VPRNFRLLEELDKGEKGIGDGSVSYGLENPEDVYLSSWIGTIIGAPN 177 VPRNFRLLEEL++GEKGIGDG+VSYG+++ +D+Y+ SW GTIIG PN Sbjct: 3977 VPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPN 4117 Score = 67.0 bits (140), Expect(3) = 5e-44 Identities = 21/43 (48%), Positives = 34/43 (79%) Frame = +1 / +1 Query: 178 TPHDGRIYSLSIFCGDQYPNKAPSVKFRSKVNLTCVNQANGVV 306 T H+GRIY L +FC YP++ P+V+F++++N++CVNQ G+V Sbjct: 4210 TVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMV 4338 Score = 54.7 bits (113), Expect(3) = 5e-44 Identities = 20/43 (46%), Positives = 31/43 (72%) Frame = +1 / +2 Query: 304 VEPSKFSILSQWKNSYTIETILVELRREMAASHNRKLPQPPEG 432 VEPS F +L W+ +T++ IL+ L++EM+A NR+L QP +G Sbjct: 4421 VEPSLFPMLGNWQREHTMQDILIGLKKEMSAPQNRRLHQPHDG 4549 Score = 29.9 bits (59), Expect(2) = 0.055 Identities = 11/44 (25%), Positives = 25/44 (56%) Frame = -2 / -3 Query: 165 NDSTDPR*KVNIFWVFQSV*DTSVTNSFFSFIEFFK*TEISWHC 34 NDS+ P + + + S+ +TN+ + ++ FK +++S +C Sbjct: 4105 NDSSCPGTHIYVISIIHSIAHCPITNALLTSLKLFKQSKVSGNC 3974 Score = 25.4 bits (49), Expect(2) = 0.055 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 / -1 Query: 291 LVDTCKVDL*SKFDRRGLVWVLISTENAKRIDSTIV 184 L+ T +D + + R VW++ TE + IDS+++ Sbjct: 4323 LIHT*HIDSSLESNSRWSVWIVCITEQLQLIDSSLM 4216
>LOC_Os04g58800:12004.t05341:unspliced-genomic ubiquitin-conjugating enzyme spm2, putative, expressed| Length = 2128 Score = 69.3 bits (145), Expect(4) = 1e-40 Identities = 27/61 (44%), Positives = 41/61 (67%) Frame = +1 / +3 Query: 304 VEPSKFSILSQWKNSYTIETILVELRREMAASHNRKLPQPPEGANF*CCFSLCVALYYIV 483 VE KF +L+ W+ YT+E IL +L++EMAA H+RKL QPPEG F* + ++ ++ Sbjct: 1632 VESKKFHMLANWQREYTMENILTQLKKEMAAPHSRKLVQPPEGTFF*SYREMFEGMFLLL 1811 Query: 484 M 486 + Sbjct: 1812 L 1814 Score = 66.6 bits (139), Expect(4) = 1e-40 Identities = 24/57 (42%), Positives = 36/57 (63%) Frame = +1 / +2 Query: 160 IIGAPNTPHDGRIYSLSIFCGDQYPNKAPSVKFRSKVNLTCVNQANGVVEPSKFSIL 330 ++G + H+GRIY L +FC YP+K P+V+F S++N+ CVN G+V K L Sbjct: 512 LVGWLQSVHEGRIYQLKLFCDKDYPDKPPTVRFHSRINMPCVNPDTGLVRMLKIPSL 682 Score = 63.8 bits (133), Expect(4) = 1e-40 Identities = 24/32 (75%), Positives = 30/32 (93%) Frame = +1 / +2 Query: 37 VPRNFRLLEELDKGEKGIGDGSVSYGLENPED 132 VPRNFRLLEEL++GEKGIGDG+VSYG+++ D Sbjct: 218 VPRNFRLLEELERGEKGIGDGTVSYGMDDDGD 313 Score = 29.0 bits (57), Expect(4) = 1e-40 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 / +2 Query: 118 ENPEDVYLSSWIGTIIGAPN 177 ++ +D+++ SW GTIIG N Sbjct: 302 DDGDDIFMRSWTGTIIGPLN 361
>LOC_Os01g16650:12001.t01514:unspliced-genomic ubiquitin-conjugating enzyme X, putative, expressed| Length = 888 Score = 48.7 bits (100), Expect = 3e-05 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +1 / +1 Query: 124 PEDVYLSSWIGTIIGAPNTPHDGRIYSLSIFCGDQYPNKAPSVKFRS 264 PE + SW+GTI G+ T ++G Y LS+ +YP K P V+F + Sbjct: 298 PEGDNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFET 438 Score = 31.3 bits (62), Expect = 5.2 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = -3 / -2 Query: 257 NLTEGALFGY*SPQKMLRE*ILPS*GVFGAPMIVPIQDER*TSSG 123 NLT G L+GY + R * +PS V P +VP Q + + SG Sbjct: 431 NLTLGGLYGYSPGKARERR*EVPSYAVAADPAMVPTQLKMLSPSG 297
>LOC_Os02g48920:12002.t04476:unspliced-genomic ubiquitin-conjugating enzyme family protein| Length = 1525 Score = 37.3 bits (75), Expect = 0.085 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +1 / +1 Query: 139 LSSWIGTIIGAPNTPHDGRIYSLSIFCGDQYPNKAPSVKFRSKV 270 L W I G P TP+ G + + ++ ++YP + P + F++KV Sbjct: 193 LLHWEVIIDGPPGTPYAGGTFPVDVWYPNEYPFQPPKLTFKTKV 324
>LOC_Os12g44000:12012.t04066:unspliced-genomic ubiquitin-conjugating enzyme E2 W, putative, expressed| Length = 3318 Score = 35.0 bits (70), Expect = 0.41 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 / +3 Query: 148 WIGTIIGAPNTPHDGRIYSLSIFCGDQYPNKAPSVKF 258 W+ + GA T + G Y L + + YP +AP V F Sbjct: 567 WVIEVTGAAGTLYAGETYQLQVDFPEHYPMEAPQVSF 677
>LOC_Os11g29840:12011.t02588:unspliced-genomic expressed protein| Length = 5524 Score = 34.5 bits (69), Expect = 0.56 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 / -2 Query: 126 RRCLPFILDRYYHWCTKHTSRW 191 RRCLP + R HWC+ + W Sbjct: 4920 RRCLPVTMHRRRHWCSSRSPSW 4855
>LOC_Os03g47770:12003.t04137:unspliced-genomic ubiquitin-conjugating enzyme E2 W, putative, expressed| Length = 5078 Score = 34.1 bits (68), Expect = 0.78 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 / +2 Query: 148 WIGTIIGAPNTPHDGRIYSLSIFCGDQYPNKAPSVKF 258 W+ + GA T + G Y L + + YP +AP V F Sbjct: 746 WVIEVAGAAGTLYAGETYQLQVDFPEHYPMEAPQVGF 856
>LOC_Os09g08440:12009.t00638:unspliced-genomic mtN3/saliva family protein| Length = 6400 Score = 33.1 bits (66), Expect = 1.5 Identities = 13/43 (30%), Positives = 27/43 (62%) Frame = -2 / +1 Query: 540 YFFFFFIHYKNCFMYSTIHYNIIKSDTKRKATLKVCTFRRLRK 412 +FF + ++ C+M+ TI++ IK++ RK +K +RL++ Sbjct: 5260 FFF*NKLFFRECYMFPTIYHTTIKTN*TRKLKVKQQQGQRLQR 5388
>LOC_Os05g24960:12005.t02153:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2495 Score = 32.7 bits (65), Expect = 2.0 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLTHVRL 270 RIE +DG+T P +WLT RL Sbjct: 1333 RIEKYDGTTNPESWLTVYRL 1392
>LOC_Os02g49960:12002.t04580:unspliced-genomic expressed protein| Length = 2247 Score = 32.7 bits (65), Expect = 2.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 / +3 Query: 117 GKPRRCLPFILDRYYHWCTKHTSRW 191 G+P R P I H C +HT RW Sbjct: 1203 GEPNRGSPLIAGNNQHKCARHTDRW 1277
>LOC_Os10g37500:12010.t03010:unspliced-genomic ATP binding protein, putative, expressed| Length = 1944 Score = 32.7 bits (65), Expect = 2.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 / +3 Query: 16 RAMASVTVPRNFRLLEELDKGEKGIGDGSVS 108 RA+ T PR+ L+E+LD+ +G GDG S Sbjct: 924 RALLLETTPRSLILVEDLDRYLRGGGDGETS 1016
>LOC_Os09g36310:12009.t03107:unspliced-genomic hypothetical protein| Length = 1512 Score = 32.7 bits (65), Expect = 2.0 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -2 / +3 Query: 468 SDTKRKATLKVCTFRRLRKLSIVTGSH 388 S T ++A L +C+ RR RKLS V +H Sbjct: 846 SSTTQRALLVICSMRRSRKLSSVIANH 926
>LOC_Os03g25310:12003.t02223:unspliced-genomic hypothetical protein| Length = 823 Score = 32.7 bits (65), Expect = 2.0 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 / +2 Query: 19 AMASVTVPRNFRLLEELDKGEKGIGDGSVSYGLENPEDVYLSSW 150 A + T R R+ ELD G+K DG ++ G+E + ++L W Sbjct: 437 AARATTAGRLCRVSSELDDGDKVREDGEMAAGMEGQQWLWLWRW 568 Score = 32.2 bits (64), Expect = 2.8 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 / +2 Query: 52 RLLEELDKGEKGIGDGSVSYGLENPEDVY 138 R+L +LD GEKG DG ++ G+E + ++ Sbjct: 713 RVLSKLDDGEKGREDGEMAAGMEGQQRLW 799
>LOC_Os03g12820:12003.t01079:unspliced-genomic ATP8, putative, expressed| Length = 3251 Score = 27.6 bits (54), Expect(3) = 2.3 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +1 / +2 Query: 439 F*CCFSLCVALYYIVMN 489 F*CCFS A +IVMN Sbjct: 2933 F*CCFSFSGAQMFIVMN 2983 Score = 22.1 bits (42), Expect(3) = 2.3 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +1 / +3 Query: 43 RNFRLLEELDKGEKGIGDGS 102 R F L +L +G+GDGS Sbjct: 786 RAFHLQGQLLAAARGVGDGS 845 Score = 21.7 bits (41), Expect(3) = 2.3 Identities = 6/12 (50%), Positives = 9/12 (75%) Frame = +3 / +2 Query: 129 RCLPFILDRYYH 164 +CL + + RYYH Sbjct: 1085 KCLIYFIFRYYH 1120
>LOC_Os02g56480:12002.t05220:unspliced-genomic PB1 domain containing protein, expressed| Length = 2222 Score = 29.9 bits (59), Expect(2) = 3.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 / +3 Query: 267 GQPYMCQPSQWRC*AIKILYSLSVEELLHHR 359 G+ Y+C P WR ++L+ + LLHHR Sbjct: 1200 GKVYICCPWLWR*PCPRLLHPRAAAWLLHHR 1292 Score = 22.1 bits (42), Expect(2) = 3.8 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +3 / +3 Query: 120 KPRRCLPFILDR 155 +PRRCLP L R Sbjct: 882 RPRRCLPGRLSR 917
>LOC_Os02g49730:12002.t04557:unspliced-genomic pre-mRNA-splicing factor 31, putative, expressed| Length = 5628 Score = 31.3 bits (62), Expect = 5.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 / -3 Query: 297 WRC*AIKILYSLSVEELLHHRN 362 W C KI+ S+ V ++LHHRN Sbjct: 2074 WICGIHKIMISIPVRKILHHRN 2009
>LOC_Os01g70020:12001.t06304:unspliced-genomic dek protein, putative, expressed| Length = 6644 Score = 31.3 bits (62), Expect = 5.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 / -1 Query: 147 LDRYYHWCTKHTSRW*NLFS*HFLWRSIPKQGPFC 251 + R+YH + HT RW L H L S Q P C Sbjct: 6566 IKRFYHIKSAHTHRWHLLIRNHKLQHSTSIQMPLC 6462
>LOC_Os11g19480:12011.t01718:unspliced-genomic ATP binding protein, putative, expressed| Length = 1725 Score = 31.3 bits (62), Expect = 5.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 / -2 Query: 263 QRSTLHVSTKPMALLSHQNSLFSLSGRTPTPSK 361 +R+TL T+PMA S NSL+ + P PS+ Sbjct: 1511 RRTTLGWRTRPMAPASAANSLYLSAAAAPPPSR 1413
>LOC_Os06g23100:12006.t02122:unspliced-genomic hypothetical protein| Length = 468 Score = 31.3 bits (62), Expect = 5.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +1 / +1 Query: 19 AMASVTVPRNFRLLEELDKGEKGIGDGSVSYGLENPE 129 A + TV R+ ELD GEKG DG ++ G+E + Sbjct: 4 AARATTVGGLRRVPSELDDGEKGREDGEMAAGMEGQQ 114
>LOC_Os05g20320:12005.t01793:unspliced-genomic conserved hypothetical protein| Length = 2581 Score = 31.3 bits (62), Expect = 5.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = -2 / +1 Query: 525 FIHYKNCFMYSTIH 484 F+HY++CFM+ TIH Sbjct: 244 FMHYESCFMFLTIH 285
>LOC_Os04g42280:12004.t03781:unspliced-genomic MRS2-5, putative, expressed| Length = 3334 Score = 31.3 bits (62), Expect = 5.3 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +2 / -1 Query: 140 FHLGSVLSLVHQTHLTMVESILLAFSVEINTQTRPLLSN 256 FH +L VH +H+T+V LL ++N RP++ N Sbjct: 1483 FHPPLLLCEVHFSHITIVVHQLLYLISDLNGGNRPIIEN 1367
>LOC_Os02g48910:12002.t04475:unspliced-genomic ubiquitin-conjugating enzyme E2-17 kDa 11, putative, expressed| Length = 1085 Score = 31.3 bits (62), Expect = 5.3 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +1 / +3 Query: 148 WIGTIIGAPNTPHDGRIYSLSIFCGDQYPNKAPSVKFRSKV 270 W I G TP+ G ++ + ++ YP + P + F++KV Sbjct: 204 WEVVIDGPAATPYAGGVFPVDVWFPYDYPFRPPKLFFKTKV 326
>LOC_Os01g16740:12001.t01523:unspliced-genomic transposon protein, putative, unclassified| Length = 6859 Score = 31.3 bits (62), Expect = 5.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 / +3 Query: 537 FFFFFIHYKNCFMYSTIHYNIIKSDTKRKATLKVCTFRRLRKL 409 FF FFI + Y+++ +II S KR LKV F + + L Sbjct: 3558 FFVFFIKQDSFISYTSLMEHIISSQPKRCNELKVNFFLKTKVL 3686
>LOC_Os07g18840:12007.t01742:unspliced-genomic transposon protein, putative, unclassified| Length = 3973 Score = 30.9 bits (61), Expect = 7.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 / +1 Query: 537 FFFFFIHYKNCFMYSTIHYNIIKSDTKRKATLKVCTFRRLRKL 409 F FFFI + Y+++ +II S KR LKV F + + L Sbjct: 643 FCFFFIKQDSFISYTSLMEHIISSQPKRCNELKVNFFLKTKVL 771
>LOC_Os04g28310:12004.t02529:unspliced-genomic hypothetical protein| Length = 3236 Score = 26.3 bits (51), Expect(2) = 9.7 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -2 / +3 Query: 537 FFFFFIHYKNCFMYSTIHYNII 472 FF FFIH F+Y I + I+ Sbjct: 1320 FFLFFIHTHTNFIYVCIFFYIL 1385 Score = 24.9 bits (48), Expect(2) = 9.7 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = -2 / +1 Query: 180 CVWCTNDSTDPR*KVNIFWV 121 C WC S +P VNI ++ Sbjct: 2380 CTWCAPVSANPATHVNILFI 2439
>LOC_Os12g24750:12012.t02198:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2615 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +2 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1025 RIEKYDGTTNPESWLT 1072
>LOC_Os12g21780:12012.t01918:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6128 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +3 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1338 RIEKYDGTTNPESWLT 1385
>LOC_Os11g29570:12011.t02561:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5806 Score = 30.4 bits (60), Expect = 9.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 / +1 Query: 326 IENFDGSTTPLAWLTHVRL 270 IE +DG+T P +WLT RL Sbjct: 1318 IEKYDGTTNPESWLTVYRL 1374
>LOC_Os11g29440:12011.t02549:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 1446 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / -1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 378 RIEKYDGTTNPESWLT 331
>LOC_Os11g26120:12011.t02228:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6348 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +3 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1917 RIEKYDGTTNPESWLT 1964
>LOC_Os11g12100:12011.t01097:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5260 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1333 RIEKYDGTTNPESWLT 1380
>LOC_Os09g22360:12009.t01969:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6111 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1324 RIEKYDGTTNPESWLT 1371
>LOC_Os08g36590:12008.t03398:unspliced-genomic expressed protein| Length = 2084 Score = 30.4 bits (60), Expect = 9.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 / -1 Query: 120 KPRRCLPFILDRYYHWCTKHTSRW*NL 200 +PRR + + +CT HTS W NL Sbjct: 1796 EPRRSISHCISLSLRYCTSHTSVWQNL 1716
>LOC_Os07g27720:12007.t02465:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3572 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +3 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1329 RIEKYDGTTNPESWLT 1376
>LOC_Os07g14990:12007.t01362:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3902 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1339 RIEKYDGTTNPESWLT 1386
>LOC_Os06g33290:12006.t03026:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5212 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1339 RIEKYDGTTNPESWLT 1386
>LOC_Os06g11560:12006.t01033:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2370 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 742 RIEKYDGTTNPESWLT 789
>LOC_Os04g48900:12004.t04406:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2700 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1330 RIEKYDGTTNPESWLT 1377
>LOC_Os04g23310:12004.t02058:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5268 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1027 RIEKYDGTTNPESWLT 1074
>LOC_Os03g52530:12003.t04577:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2555 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +1 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1330 RIEKYDGTTNPESWLT 1377
>LOC_Os02g58710:12002.t05441:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5267 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +3 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 687 RIEKYDGTTNPESWLT 734
>LOC_Os01g36000:12001.t03150:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2729 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 / +3 Query: 329 RIENFDGSTTPLAWLT 282 RIE +DG+T P +WLT Sbjct: 1287 RIEKYDGTTNPESWLT 1334
>LOC_Os01g01100:12001.t00010:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5557 Score = 30.4 bits (60), Expect = 9.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 / +2 Query: 326 IENFDGSTTPLAWLTHVRL 270 IE +DG+T P +WLT RL Sbjct: 773 IEKYDGTTNPESWLTVYRL 829
>LOC_Os10g31740:12010.t02497:unspliced-genomic glycine-rich cell wall structural protein 2 precursor, putative| Length = 1758 Score = 30.4 bits (60), Expect = 9.9 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -1 / +3 Query: 406 YCDWQPFLCEVQLRWFRWCR 347 Y W+ +LC RW+ WCR Sbjct: 1482 YSKWRLWLCRFIQRWW*WCR 1541
>LOC_Os08g32400:12008.t02985:unspliced-genomic hypothetical protein| Length = 2404 Score = 30.4 bits (60), Expect = 9.9 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = -1 / -1 Query: 193 YHREVCLVHQ**YRSKMKGKHLLGFPIRMRHFRHQFLFLLYRVLQVNGN 47 Y R +C++ Y + + KH L + ++R +H ++ Y L+ + N Sbjct: 562 YGRHICILDSNTYEQR*ESKHHLKWN*KIRIIKHDASYIYYSALRESNN 416
>LOC_Os05g11470:12005.t00979:unspliced-genomic hypothetical protein| Length = 1095 Score = 30.4 bits (60), Expect = 9.9 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 / +2 Query: 293 PMALLSHQNSLFSLSGRTPTPSKPS 367 P+ L S +SLFSLS R P+PS S Sbjct: 20 PVPLSSSSSSLFSLSLRFPSPSSSS 94
>LOC_Os02g39040:12002.t03542:unspliced-genomic mTERF-like protein, putative, expressed| Length = 2503 Score = 30.4 bits (60), Expect = 9.9 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -1 / +2 Query: 397 WQPFLCEVQLRWFRWCRSS 341 W+PFL +++ W RW R S Sbjct: 1280 WKPFLKNMEMVWLRWWRIS 1336 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 212,306,925 Number of extensions: 3510805 Number of successful extensions: 12990 Number of sequences better than 10.0: 49 Length of query: 180 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 132 Effective length of database: 52,912,542 Effective search space: 6984455544 Effective search space used: 6984455544 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
