Clone Information

BLAST Search Result

Clone Name	FLbaf146d21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Q5QJC3:DCR1B_CHICK DNA cross-link repair 1B protein - Gallus gal...	103	2e-21
2	Q8C7W7:DCR1B_MOUSE DNA cross-link repair 1B protein - Mus muscul...	97	4e-19
3	Q9H816:DCR1B_HUMAN DNA cross-link repair 1B protein - Homo sapie...	96	5e-19
4	Q38961:SNM1_ARATH DNA cross-link repair protein SNM1 - Arabidops...	81	2e-14
5	Q5XIX3:DCR1C_RAT Artemis protein - Rattus norvegicus (Rat)	79	8e-14
6	Q5R6Z9:DCR1C_PONPY Artemis protein - Pongo pygmaeus (Orangutan)	78	1e-13
7	Q96SD1:DCR1C_HUMAN Artemis protein - Homo sapiens (Human)	78	1e-13
8	Q8K4J0:DCR1C_MOUSE Artemis protein - Mus musculus (Mouse)	77	3e-13
9	Q5QJC2:DCR1C_CHICK Artemis protein - Gallus gallus (Chicken)	77	3e-13
10	Q5RGE5:DCR1C_DANRE Artemis protein - Danio rerio (Zebrafish) (Br...	73	4e-12
11	Q6PJP8:DCR1A_HUMAN DNA cross-link repair 1A protein - Homo sapie...	72	1e-11
12	Q10264:PSO2_SCHPO DNA cross-link repair protein pso2/snm1 - Schi...	70	4e-11
13	Q9JIC3:DCR1A_MOUSE DNA cross-link repair 1A protein - Mus muscul...	69	8e-11
14	Q5QJC4:DCR1A_CHICK DNA cross-link repair 1A protein - Gallus gal...	65	1e-09
15	P30620:PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 - Sacc...	52	8e-06
16	Q5LMQ6:RPOC_SILPO DNA-directed RNA polymerase beta' chain - Sili...	37	0.26
17	Q06704:IMH1_YEAST Golgin IMH1 - Saccharomyces cerevisiae (Baker'...	37	0.34
18	Q82Z41:RPOC_ENTFA DNA-directed RNA polymerase beta' chain - Ente...	37	0.45
19	P97432:NBR1_MOUSE Next to BRCA1 gene 1 protein - Mus musculus (M...	36	0.58
20	Q8PTT8:ECX1_METMA Probable exosome complex exonuclease 1 - Metha...	36	0.58
21	P77917:RPOC_PEDAC DNA-directed RNA polymerase beta' chain - Pedi...	35	1.00
22	Q5M2F6:RPOC_STRT2 DNA-directed RNA polymerase beta' chain - Stre...	35	1.3
23	Q5LXV4:RPOC_STRT1 DNA-directed RNA polymerase beta' chain - Stre...	35	1.3
24	P12839:NFM_RAT Neurofilament medium polypeptide - Rattus norvegi...	35	1.3
25	Q8KTH8:RPOC_XANOR DNA-directed RNA polymerase beta' chain - Xant...	35	1.7
26	Q2NZX9:RPOC_XANOM DNA-directed RNA polymerase beta' chain - Xant...	35	1.7
27	Q8PC55:RPOC_XANCP DNA-directed RNA polymerase beta' chain - Xant...	35	1.7
28	Q4URD3:RPOC_XANC8 DNA-directed RNA polymerase beta' chain - Xant...	35	1.7
29	Q3BWZ0:RPOC_XANC5 DNA-directed RNA polymerase beta' chain - Xant...	35	1.7
30	Q8PNS9:RPOC_XANAC DNA-directed RNA polymerase beta' chain - Xant...	35	1.7
31	Q8DNF1:RPOC_STRR6 DNA-directed RNA polymerase beta' chain - Stre...	35	1.7
32	Q97NQ8:RPOC_STRPN DNA-directed RNA polymerase beta' chain - Stre...	35	1.7
33	Q8E238:RPOC_STRA5 DNA-directed RNA polymerase beta' chain - Stre...	35	1.7
34	Q8E7J7:RPOC_STRA3 DNA-directed RNA polymerase beta' chain - Stre...	35	1.7
35	Q3K3L1:RPOC_STRA1 DNA-directed RNA polymerase beta' chain - Stre...	35	1.7
36	P30786:PYHD_NPVHZ Polyhedrin - Heliothis zea nuclear polyhedrosi...	35	1.7
37	O43719:HTSF1_HUMAN HIV Tat-specific factor 1 - Homo sapiens (Human)	35	1.7
38	Q0JMV4:AMYC1_ORYSJ Alpha-amylase isozyme C - Oryza sativa subsp....	35	1.7
39	A2WPU3:AMYC1_ORYSI Alpha-amylase isozyme C - Oryza sativa subsp....	35	1.7
40	Q9PA87:RPOC_XYLFA DNA-directed RNA polymerase beta' chain - Xyle...	34	2.2
41	Q48VR0:RPOC_STRPM DNA-directed RNA polymerase beta' chain - Stre...	34	2.2
42	Q8P2Y2:RPOC_STRP8 DNA-directed RNA polymerase beta' chain - Stre...	34	2.2
43	Q5XE96:RPOC_STRP6 DNA-directed RNA polymerase beta' chain - Stre...	34	2.2
44	Q8K8W2:RPOC_STRP3 DNA-directed RNA polymerase beta' chain - Stre...	34	2.2
45	P0C0E0:RPOC_STRP1 DNA-directed RNA polymerase beta' chain - Stre...	34	2.2
46	Q9CEN7:RPOC_LACLA DNA-directed RNA polymerase beta' chain - Lact...	34	2.2
47	Q5BJD2:CO043_DANRE Uncharacterized protein C15orf43 homolog - Da...	34	2.2
48	Q4FM95:TIG_PELUB Trigger factor - Pelagibacter ubique	34	2.9
49	Q92543:SNX19_HUMAN Sorting nexin-19 - Homo sapiens (Human)	34	2.9
50	Q8DS47:RPOC_STRMU DNA-directed RNA polymerase beta' chain - Stre...	34	2.9
51	P32373:PYHD_NPVHC Polyhedrin - Hyphantria cunea nuclear polyhedr...	34	2.9
52	Q501R9:NBR1_RAT Next to BRCA1 gene 1 protein - Rattus norvegicus...	34	2.9
53	Q8L785:SYGM2_ARATH Glycyl-tRNA synthetase 2, chloroplast/mitocho...	33	3.8
54	Q3J5S9:RPOC_RHOS4 DNA-directed RNA polymerase beta' chain - Rhod...	33	3.8
55	P03237:PYHD_NPVBM Polyhedrin - Bombyx mori nuclear polyhedrosis ...	33	3.8
56	P14328:SP96_DICDI Spore coat protein SP96 - Dictyostelium discoi...	33	3.8
57	P02854:VCLB_PEA Provicilin precursor - Pisum sativum (Garden pea)	33	4.9
58	Q3ILP8:RPOC_PSEHT DNA-directed RNA polymerase beta' chain - Pseu...	33	4.9
59	Q88XZ2:RPOC_LACPL DNA-directed RNA polymerase beta' chain - Lact...	33	4.9
60	Q89B21:RPOC_BUCBP DNA-directed RNA polymerase beta' chain - Buch...	33	4.9
61	P22115:PYHD_NPVPF Polyhedrin - Panolis flammea multiple nucleoca...	33	4.9
62	P07488:PYHD_NPVOP Polyhedrin - Orgyia pseudotsugata multicapsid ...	33	4.9
63	P12423:PYHD_NPVMB Polyhedrin - Mamestra brassicae nuclear polyhe...	33	4.9
64	P33732:PYHD_NPVBS Polyhedrin - Buzura suppressaria nuclear polyh...	33	4.9
65	P14599:A4_DROME Beta-amyloid-like protein precursor - Drosophila...	33	4.9
66	P13918:VCLC_PEA Vicilin precursor - Pisum sativum (Garden pea)	33	6.5
67	Q87A33:RPOC_XYLFT DNA-directed RNA polymerase beta' chain - Xyle...	33	6.5
68	Q1Q8Q0:RPOC_PSYCK DNA-directed RNA polymerase beta' chain - Psyc...	33	6.5
69	Q4FQH4:RPOC_PSYAR DNA-directed RNA polymerase beta' chain - Psyc...	33	6.5
70	P19176:RPOC_PSEPU DNA-directed RNA polymerase beta' chain - Pseu...	33	6.5
71	Q2RFP0:RPOC_MOOTA DNA-directed RNA polymerase beta' chain - Moor...	33	6.5
72	Q890N5:RPOC_CLOTE DNA-directed RNA polymerase beta' chain - Clos...	33	6.5
73	Q25469:PYHD_NPVMN Polyhedrin - Malacosoma neustria nuclear polyh...	33	6.5
74	P04871:PYHD_NPVAC Polyhedrin - Autographa californica nuclear po...	33	6.5
75	Q5ZIH0:INT11_CHICK Integrator complex subunit 11 - Gallus gallus...	33	6.5
76	Q895I8:FTSK_CLOTE DNA translocase ftsK - Clostridium tetani	33	6.5
77	Q6F0Q5:EFTS_MESFL Elongation factor Ts - Mesoplasma florum (Acho...	33	6.5
78	Q2LQ86:RPOC_SYNAS DNA-directed RNA polymerase beta' chain - Synt...	32	8.4
79	Q4ZMN8:RPOC_PSEU2 DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
80	Q889X7:RPOC_PSESM DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
81	Q88QP1:RPOC_PSEPK DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
82	Q3K5Y2:RPOC_PSEPF DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
83	Q4K527:RPOC_PSEF5 DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
84	Q9HWC9:RPOC_PSEAE DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
85	Q48D30:RPOC_PSE14 DNA-directed RNA polymerase beta' chain - Pseu...	32	8.4
86	Q47UW0:RPOC_COLP3 DNA-directed RNA polymerase beta' chain - Colw...	32	8.4
87	P81472:PYHD_NPVAG Polyhedrin - Anticarsia gemmatalis nuclear pol...	32	8.4
88	Q9UKX3:MYH13_HUMAN Myosin-13 - Homo sapiens (Human)	32	8.4
89	Q3MHC2:INT11_RAT Integrator complex subunit 11 - Rattus norvegic...	32	8.4
90	Q5NVE6:INT11_PONPY Integrator complex subunit 11 - Pongo pygmaeu...	32	8.4
91	Q9CWS4:INT11_MOUSE Integrator complex subunit 11 - Mus musculus ...	32	8.4
92	Q5TA45:INT11_HUMAN Integrator complex subunit 11 - Homo sapiens ...	32	8.4
93	Q2YDM2:INT11_BOVIN Integrator complex subunit 11 - Bos taurus (B...	32	8.4
94	Q9VYB0:BTHD_DROME Selenoprotein BthD precursor - Drosophila mela...	32	8.4
95	Q2UN27:PTPA1_ASPOR Serine/threonine-protein phosphatase 2A activ...	32	8.4

>Q5QJC3:DCR1B_CHICK DNA cross-link repair 1B protein - Gallus gallus (Chicken)|
          Length = 457
 Score =  103 bits (258), Expect = 2e-21
 Identities = 108/368 (29%), Positives = 160/368 (43%), Gaps = 6/368 (1%)
 Frame = +2

Query: 56   GLPFAVDTWTPASAL-KRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQLG 232
            G P AVD W+   A   R  FL+H H DH  G+++T +   +Y S LT  +  H   ++ 
Sbjct: 8    GTPIAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRL-KVP 65

Query: 233  ADAFVEMELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPDCI 412
                  +E+G    V +   + TVT  DANHCPG+VMFLFEGAFG  L+TGD R +P   
Sbjct: 66   TRWIRPLEVGQSHAVGE---EVTVTLLDANHCPGSVMFLFEGAFGTILYTGDFRYSP--- 119

Query: 413  QGLPFRYITAEAPGASQAPPSC---RIDYLFLDCTFAKCPLQFPAKEASIRQVINCIWEH 583
                          A Q  P+    RID L+LD T  +     P++  +  Q    I  H
Sbjct: 120  --------------AMQREPALSGRRIDRLYLDNTNCRPHGALPSRSRAALQAAQLIRRH 165

Query: 584  PNAPTVYLVSDMLGQEEILIEVSRAFGSKIYIDRDNNSECYHTLSLVAPEIL-TEDASSR 760
            P    V  V   LG+EE+L++++  FG+ + +   + S       L  PE+  TE+ + R
Sbjct: 166  PQHRVVIGVYS-LGKEELLVDLALEFGTWVVV---SPSRLEQMRLLELPEVFTTEEGAGR 221

Query: 761  FQVIEFPRLSERATDMLALARARQQPEPLIIRPSTQWYAHYAAPEASLKQKPA-LTEPMQ 937
               ++   ++E   D L                   W   +         +P  +T P  
Sbjct: 222  IHAVD---VAEIRWDTL-----------------VSWNVLHPTIAILPTGRPVKVTHPQ- 260

Query: 938  DEFGVWHVCLTMHSSRGELEHALRFLRPKWVISTTPPCLAMDLAYVKKHCFLSRLSPDDP 1117
                +  +  + HSS  EL   +++L+P  VI    P +  D+ Y     F   LSPD  
Sbjct: 261  ----IHLIPYSDHSSFSELCEFVKWLKPCSVI----PIVKGDMCYAS---FQKYLSPDHQ 309

Query: 1118 IWKLLRIP 1141
                L IP
Sbjct: 310  ALPGLGIP 317

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>Q8C7W7:DCR1B_MOUSE DNA cross-link repair 1B protein - Mus musculus (Mouse)|
          Length = 541

 Score = 96.7 bits (239), Expect = 4e-19
 Identities = 116/448 (25%), Positives = 184/448 (41%), Gaps = 27/448 (6%)
 Frame = +2

Query: 62   PFAVDTWTPASA-LKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQLGAD 238
            P AVD W+   A   R  FLTH H DH  G+++T A   +Y S +T  +  H   Q+   
Sbjct: 10   PIAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWAR-PLYCSPITACLL-HRRLQVSKH 67

Query: 239  AFVEMELGAPVLVP-DPDGD--FTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPDC 409
                +E+G   ++P D  G    TVT  DANHCPG+VMFLFEG FG  L+TGD R TP  
Sbjct: 68   WIRALEVGESHVLPLDEIGQETMTVTLIDANHCPGSVMFLFEGYFGTILYTGDFRYTPSM 127

Query: 410  IQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQVINCIWEHPN 589
            +          + P         +I  L+LD T     L  P+++ + +Q++  I + P 
Sbjct: 128  L----------KEPALILGK---QIHTLYLDNTNCNPALVLPSRQEATQQIVQLIRQFPQ 174

Query: 590  APTVYLVSDMLGQEEILIEVSRAFGSKIYIDRDNNSECYHTLSLVAPEILTEDASSRFQV 769
               + +    LG+E +L +++  F + + +      E    L L A     E+ + R   
Sbjct: 175  -HNIKIGLYSLGKESLLEQLALEFRTWVVLS-PQRLELVQLLGL-ADVFTVEEEAGRIHA 231

Query: 770  IEFPRLSERATDMLALARARQQPEPLIIRPSTQWYAHYAAPEASLKQKPALTEPMQDEFG 949
            ++   +        A+ +  Q    + I P+++      +P  S+      T P  D   
Sbjct: 232  VDHTEICHS-----AMLQWNQSHPTIAIFPTSR---KVRSPHPSI-----YTVPYSD--- 275

Query: 950  VWHVCLTMHSSRGELEHALRFLRPKWVI-------------STTPPCLAMDLAYVKKHCF 1090
                    HSS  EL   +  LRP  V+              +  P LAM L       +
Sbjct: 276  --------HSSYSELRAFVAALRPCQVVPIVHQKPCGEFFQDSLSPRLAMPLIPHSVQQY 327

Query: 1091 LSRLS-PDDPIWKL---LRIPHGNPTVTGSPQAAITTVEAVKQREEEESEDT------CS 1240
            +S  S   + +W+L   L+ P     V  SP+     V+  +  ++ + E+         
Sbjct: 328  MSSSSRKTNVLWQLERRLKRPRTQGVVFESPEEKANQVKVDRDSKKHKKENLSPWAGHLE 387

Query: 1241 AVCSQVLQDEGPVLQDFAIEVAQPVTLF 1324
             +C   LQ    +  DF  +      LF
Sbjct: 388  RLCPHPLQARKQLFPDFCRKERDEPVLF 415

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>Q9H816:DCR1B_HUMAN DNA cross-link repair 1B protein - Homo sapiens (Human)|
          Length = 532

 Score = 96.3 bits (238), Expect = 5e-19
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
 Frame = +2

Query: 62  PFAVDTWTPASA-LKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTV-LIARHIFPQLGA 235
           P AVD W+   A   R  FL+H H DH  G+++T A   +Y S +T  L+ RH+  Q+  
Sbjct: 10  PIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHL--QVSK 66

Query: 236 DAFVEMELGAPVLVP-DPDGD--FTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPD 406
                +E+G   ++P D  G    TVT  DANHCPG+VMFLFEG FG  L+TGD R TP 
Sbjct: 67  QWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPS 126

Query: 407 CIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQVINCIWEHP 586
            +          + P  +      +I  L+LD T     L  P+++ +  Q++  I +HP
Sbjct: 127 ML----------KEPALTLGK---QIHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRKHP 173

Query: 587 NAPTVYLVSDMLGQEEILIEVSRAF 661
               + +    LG+E +L +++  F
Sbjct: 174 Q-HNIKIGLYSLGKESLLEQLALEF 197

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>Q38961:SNM1_ARATH DNA cross-link repair protein SNM1 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 484

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 89/362 (24%), Positives = 147/362 (40%), Gaps = 16/362 (4%)
 Frame = +2

Query: 2    SRRGRGRKRDAMPIELPR---------GLPFAVDTWTPASALKRHR-FLTHAHRDHLAGI 151
            S  G+ R+  +   + PR         G PF VD +           FLTH H DH  G+
Sbjct: 126  SALGKRRRDSSFSNDSPRPCPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGL 185

Query: 152  TTTSAAGAVYASRLTVLIARHIFPQLGADAFVEMELGAPVLVPDPDGDFTVTAFDANHCP 331
            T   + G +Y S LT  + R +   +   +   +EL     +        VT  +ANHCP
Sbjct: 186  TKAWSHGPIYCSSLTSRLLR-LSLSVNPSSIHPLELDVEYTI----NGIKVTLIEANHCP 240

Query: 332  GAVMFLFEGAFGNA-LHTGDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCT 508
            GA +  F    G   LHTGD R +   +Q  P  +             + R+  L+LD T
Sbjct: 241  GAALIHFRLLDGTCYLHTGDFRASKQ-MQTHPLLF-------------NQRVHVLYLDTT 286

Query: 509  FAKCPLQFPAKEASIRQVINCIWEHPNAPTVYLV---SDMLGQEEILIEVSRAFGSKIYI 679
            +     +FP+KE  +  V+    +        L+   S  +G+E + + +++A G KI+ 
Sbjct: 287  YCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKALGVKIFA 346

Query: 680  DRDNNSECY-HTLSLVAPEILTEDASSRFQVIEFPRLS-ERATDMLALARARQQPEPLII 853
            +              ++  + T+  ++   V+    L  ER  + L + R  Q    L  
Sbjct: 347  NASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLDEHLKIYR-EQYGAVLAF 405

Query: 854  RPSTQWYAHYAAPEASLKQKPALTEPMQDEFGVWHVCLTMHSSRGELEHALRFLRPKWVI 1033
            RP+   Y+        L     +    + +  ++ V  + HSS  EL   ++FLRP  +I
Sbjct: 406  RPTGWTYSEKIGEHLDL-----IKPTSRGKITIYGVPYSEHSSFTELREFVQFLRPDKII 460

Query: 1034 ST 1039
             T
Sbjct: 461  PT 462

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>Q5XIX3:DCR1C_RAT Artemis protein - Rattus norvegicus (Rat)|
          Length = 698

 Score = 79.0 bits (193), Expect = 8e-14
 Identities = 85/372 (22%), Positives = 145/372 (38%), Gaps = 27/372 (7%)
 Frame = +2

Query: 68   AVDTWTPASALKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQL------ 229
            ++D +   +   R  FL+H H+DH+ G+   S    +  S    L    +  +L      
Sbjct: 15   SIDRFDRENLKARAYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKELLLTSPK 74

Query: 230  ---GADAFVEMELGAPV---LVPDPDGD---FTVTAFDANHCPGAVMFLFEGAFGNALHT 382
                 +  + +E+  P    LV +  G+     VT   A HCPG+VMFLF+G+ G  L+T
Sbjct: 75   YKFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYT 134

Query: 383  GDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQV 562
            GD RL     +G   R     + G  +   S  +D  F D  F     Q P++E  +R V
Sbjct: 135  GDFRLA----KGEVSRMELLHSGGRVKDIQSVYLDTTFCDPRF----YQIPSREECLRGV 186

Query: 563  INCI--W--EHPNAPTVYLVSDMLGQEEILIEVSRAFGSKIYIDR----DNNSECYHTLS 718
            +  +  W    P            G E +   +S   G ++++D+     N  +  H   
Sbjct: 187  LELVRSWITRSPKHVVWLNCKAAYGYEYLFTNLSEELGVQVHVDKLDMFKNMPDILHH-- 244

Query: 719  LVAPEILTEDASSRFQVIEFPRLSE----RATDMLALARARQQPEPLIIRPSTQWYAHYA 886
                  LT D +++      P+  E            ++ +     + I+PST W+    
Sbjct: 245  ------LTTDRNTQIHACRHPKAEEYFQWNKLPCGMASKTKTVLHTISIKPSTMWFG--- 295

Query: 887  APEASLKQKPALTEPMQDEFGVWHVCLTMHSSRGELEHALRFLRPKWVISTTPPCLAMDL 1066
              E + K    +          +  C + HSS  E++  L ++ P   ++  P  + + L
Sbjct: 296  --ERTRKTNVIVRTGESS----YRACFSFHSSYSEIKDFLSYICP---VNAYPNVIPIGL 346

Query: 1067 AYVKKHCFLSRL 1102
               K   FL  L
Sbjct: 347  TVDKVMDFLKPL 358

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>Q5R6Z9:DCR1C_PONPY Artemis protein - Pongo pygmaeus (Orangutan)|
          Length = 692

 Score = 78.2 bits (191), Expect = 1e-13
 Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 22/340 (6%)
 Frame = +2

Query: 68   AVDTWTPASALKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQLGADA-- 241
            ++D +   +   R  FL+H H+DH+ G+   +    +  S    L    +  +L   +  
Sbjct: 15   SIDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELLLTSPK 74

Query: 242  -------FVEMELGAPV---LVPDPDGD---FTVTAFDANHCPGAVMFLFEGAFGNALHT 382
                    + +E+  P    LV +  G+     VT   A HCPG+VMFLF+G  G  L+T
Sbjct: 75   YRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYT 134

Query: 383  GDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQV 562
            GD RL     QG   R     + G  +   S  +D  F D  F + P +       +  V
Sbjct: 135  GDFRLA----QGEAARMELLHSGGRIKDIQSVYLDTTFCDPRFYQIPSREECLSGILELV 190

Query: 563  INCIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSKIYIDRDNNSECYHTLSLVAPEI-- 736
             + I   P            G E +   +S   G ++++   N  + +  +    PEI  
Sbjct: 191  RSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHV---NKLDMFRNM----PEILH 243

Query: 737  -LTEDASSRFQVIEFPRLSE----RATDMLALARARQQPEPLIIRPSTQWYAHYAAPEAS 901
             LT D +++      P+  E            +R R     + I+PST W+      E S
Sbjct: 244  HLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFG-----ERS 298

Query: 902  LKQKPALTEPMQDEFGVWHVCLTMHSSRGELEHALRFLRP 1021
             K    +          +  C + HSS  E++  L +L P
Sbjct: 299  RKTNVIVRTGESS----YRACFSFHSSYSEIKDFLSYLCP 334

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>Q96SD1:DCR1C_HUMAN Artemis protein - Homo sapiens (Human)|
          Length = 692

 Score = 78.2 bits (191), Expect = 1e-13
 Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 22/340 (6%)
 Frame = +2

Query: 68   AVDTWTPASALKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQLGADA-- 241
            ++D +   +   R  FL+H H+DH+ G+   +    +  S    L    +  +L   +  
Sbjct: 15   SIDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELLLTSPK 74

Query: 242  -------FVEMELGAPV---LVPDPDGD---FTVTAFDANHCPGAVMFLFEGAFGNALHT 382
                    + +E+  P    LV +  G+     VT   A HCPG+VMFLF+G  G  L+T
Sbjct: 75   YRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYT 134

Query: 383  GDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQV 562
            GD RL     QG   R     + G  +   S  +D  F D  F + P +       +  V
Sbjct: 135  GDFRLA----QGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVLELV 190

Query: 563  INCIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSKIYIDRDNNSECYHTLSLVAPEI-- 736
             + I   P            G E +   +S   G ++++   N  + +  +    PEI  
Sbjct: 191  RSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHV---NKLDMFRNM----PEILH 243

Query: 737  -LTEDASSRFQVIEFPRLSE----RATDMLALARARQQPEPLIIRPSTQWYAHYAAPEAS 901
             LT D +++      P+  E            +R R     + I+PST W+      E S
Sbjct: 244  HLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFG-----ERS 298

Query: 902  LKQKPALTEPMQDEFGVWHVCLTMHSSRGELEHALRFLRP 1021
             K    +          +  C + HSS  E++  L +L P
Sbjct: 299  RKTNVIVRTGESS----YRACFSFHSSYSEIKDFLSYLCP 334

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>Q8K4J0:DCR1C_MOUSE Artemis protein - Mus musculus (Mouse)|
          Length = 705

 Score = 77.0 bits (188), Expect = 3e-13
 Identities = 78/345 (22%), Positives = 136/345 (39%), Gaps = 27/345 (7%)
 Frame = +2

Query: 68   AVDTWTPASALKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQL------ 229
            ++D +   +   R  FL+H H+DH+ G+   S    +  S    L    +  +L      
Sbjct: 15   SIDRFDRENLKARAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELLLTSPK 74

Query: 230  ---GADAFVEMELGAPV---LVPDPDGD---FTVTAFDANHCPGAVMFLFEGAFGNALHT 382
                 +  + +E+  P    LV +  G+     VT   A HCPG+VMFLF+G+ G  L+T
Sbjct: 75   YRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYT 134

Query: 383  GDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQV 562
            GD RL     +G   R     + G  +   S  +D  F D  F     Q P++E  +R +
Sbjct: 135  GDFRLA----KGEASRMELLHSGGRVKDIQSVYLDTTFCDPRF----YQIPSREQCLRGI 186

Query: 563  INCI--W--EHPNAPTVYLVSDMLGQEEILIEVSRAFGSKIYIDR----DNNSECYHTLS 718
            +  +  W    P+           G E +   +S   G ++++D+     N  +  H   
Sbjct: 187  LELVRSWVTRSPHHVVWLNCKAAYGYEYLFTNLSEELGVQVHVDKLDMFKNMPDILHH-- 244

Query: 719  LVAPEILTEDASSRFQVIEFPRLSE----RATDMLALARARQQPEPLIIRPSTQWYAHYA 886
                  LT D +++      P+  E            ++ +     + I+PST W+    
Sbjct: 245  ------LTTDRNTQIHACRHPKAEECFQWNKLPCGITSQNKTALHTISIKPSTMWFG--- 295

Query: 887  APEASLKQKPALTEPMQDEFGVWHVCLTMHSSRGELEHALRFLRP 1021
              E + K    +          +  C + HSS  E++  L ++ P
Sbjct: 296  --ERTRKTNVIVRTGESS----YRACFSFHSSFSEIKDFLSYICP 334

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>Q5QJC2:DCR1C_CHICK Artemis protein - Gallus gallus (Chicken)|
          Length = 714

 Score = 77.0 bits (188), Expect = 3e-13
 Identities = 81/344 (23%), Positives = 138/344 (40%), Gaps = 26/344 (7%)
 Frame = +2

Query: 68   AVDTWTPASALKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQL------ 229
            ++D +   +   R  FL+H H+DH+ G+   +    + +S    L    +  +L      
Sbjct: 15   SIDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELLLTNSK 74

Query: 230  ---GADAFVEMELGAPV---LVPDPDG---DFTVTAFDANHCPGAVMFLFEGAFGNALHT 382
                 +  V +E+  P    LV +  G   D  VT   A HCPG+VMFLF+G  G  L+T
Sbjct: 75   YAFWENHIVALEVETPTQISLVDETTGEKEDIEVTLLPAGHCPGSVMFLFQGENGTVLYT 134

Query: 383  GDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQV 562
            GD RL     +G   R     +  + +   S  +D  F D  F       P++E  +  +
Sbjct: 135  GDFRLA----KGEAARMELLHSGTSVKDIQSVYLDTTFCDPRF----YHIPSREECLSGI 186

Query: 563  INCIWEHPNAPTVYLV----SDMLGQEEILIEVSRAFGSKIYIDRDNNSECYHTLSLVAP 730
            +  +         ++V        G E + I +S   G K+++   N  + +  +    P
Sbjct: 187  LELVRSWTTLSRYHVVWLNCKAAYGYEYLFINLSEELGIKVHV---NKLDMFKNM----P 239

Query: 731  EIL---TEDASSRFQVIEFPRLSERAT-DMLALARARQQPEPL---IIRPSTQWYAHYAA 889
            EIL   T D  ++      P+  +    + L      Q   PL    I+PST W+     
Sbjct: 240  EILYHITTDRYTQIHACRHPKDDDYVRGNRLPCGITCQNGTPLHVISIKPSTMWFGE--- 296

Query: 890  PEASLKQKPALTEPMQDEFGVWHVCLTMHSSRGELEHALRFLRP 1021
                +K+   +    +     +  C + HSS  E+   L ++RP
Sbjct: 297  ---RIKKTNVIVRTGE---STYRACFSFHSSYSEIMDFLSYIRP 334

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>Q5RGE5:DCR1C_DANRE Artemis protein - Danio rerio (Zebrafish) (Brachydanio rerio)|
          Length = 639

 Score = 73.2 bits (178), Expect = 4e-12
 Identities = 86/332 (25%), Positives = 137/332 (41%), Gaps = 26/332 (7%)
 Frame = +2

Query: 104  RHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQL---------GADAFVEME 256
            R  FL+H H+DH+ G+        +  S    L   ++  +L           D  V +E
Sbjct: 27   RAYFLSHCHKDHMKGLKGPLLKRKLKFSLTVKLYCSYVTKELLLSNPRYAFWEDHIVPLE 86

Query: 257  LGAPV---LVPDPDG---DFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPDCIQG 418
            L +P    L+ +  G   D  VT   A HCPG+VMFLFEGA G  L+TGD RL      G
Sbjct: 87   LDSPTSISLIDESTGETEDVVVTLLSAGHCPGSVMFLFEGAKGTVLYTGDFRLA----VG 142

Query: 419  LPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAKE---ASIRQVI-NCIWEHP 586
               R     +    +   S  ID  F D  +     Q P++E   A I+Q++ + I + P
Sbjct: 143  DAARMEYLHSGDRVKDIQSVYIDTTFFDPKY----YQIPSREACLAGIQQLVQDWICQSP 198

Query: 587  NAPTVYLVSDMLGQEEILIEVSRAFGSKIYIDRDNNSECYHTLSLVAPEIL---TEDASS 757
                        G E +   + + F S+I++   N+ + +  +    PEIL   T + ++
Sbjct: 199  YHVVWLNCKAAYGYEYLFTNLGQEFNSQIHV---NSLDMFKKM----PEILCHVTTNRAT 251

Query: 758  RFQVIEFPRLSE-RATDMLALARARQQPEPL---IIRPSTQWYAHYAAPEASLKQKPALT 925
            +      P+  E    + L          PL    I+PST W+           +K ++ 
Sbjct: 252  QIHACRHPKDEEFFRANRLPCGSTAPDGIPLNIISIKPSTIWFGERT-------RKTSVV 304

Query: 926  EPMQDEFGVWHVCLTMHSSRGELEHALRFLRP 1021
              M      +  C + HSS  E++  L ++ P
Sbjct: 305  VKMGS--SSYRACFSFHSSYLEVKDFLSYICP 334

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>Q6PJP8:DCR1A_HUMAN DNA cross-link repair 1A protein - Homo sapiens (Human)|
          Length = 1040

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 10/319 (3%)
 Frame = +2

Query: 113  FLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQLGADAFVEMELGAPVLVPDPDG 292
            FLTH H DH AG++       VY S +T  + ++    +       + L    +V     
Sbjct: 729  FLTHFHSDHYAGLSKHFTF-PVYCSEITGNLLKNKL-HVQEQYIHPLPLDTECIV----N 782

Query: 293  DFTVTAFDANHCPGAVMFLFEGAFGNA-LHTGDCRLTPDCIQGLPFRYITAEAPGASQAP 469
               V   DANHCPGAVM LF    G   LHTGD R  P   + L           A Q  
Sbjct: 783  GVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMERSLL----------ADQ-- 830

Query: 470  PSCRIDYLFLDCTFAKCPLQFPAKEASIRQVINCIWE----HPNAPTVYLVSDMLGQEEI 637
               ++  L+LD T+      FP+++  IR  IN  +E    +P+A  V   +  +G+E++
Sbjct: 831  ---KVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHA-LVVCGTYSIGKEKV 886

Query: 638  LIEVSRAFGSKIYIDRDNNSECYHTLS-LVAPE----ILTEDASSRFQVIEFPRLSERAT 802
             + ++   GSK+ +    + E Y TL  L  PE    I T+  SS   ++   +++ +  
Sbjct: 887  FLAIADVLGSKVGM----SQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQINFKGL 942

Query: 803  DMLALARARQQPEPLIIRPSTQWYAHYAAPEASLKQKPALTEPMQDEFGVWHVCLTMHSS 982
                     +  + L  RP+   +++     A       +    +    ++ +  + HSS
Sbjct: 943  QSHLKKCGGKYNQILAFRPTGWTHSNKFTRIAD------VIPQTKGNISIYGIPYSEHSS 996

Query: 983  RGELEHALRFLRPKWVIST 1039
              E++  +++L+P+ +I T
Sbjct: 997  YLEMKRFVQWLKPQKIIPT 1015

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>Q10264:PSO2_SCHPO DNA cross-link repair protein pso2/snm1 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 560

 Score = 70.1 bits (170), Expect = 4e-11
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
 Frame = +2

Query: 47  LPRGLPFAVDTWTPAS--ALKRHRFLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIF 220
           +P  +PFAVD +   +   ++ + FL+H H DH  G+T     G +Y S +T  +  ++ 
Sbjct: 189 MPYNIPFAVDAFAYGAIDGVEAY-FLSHFHSDHYGGLTPKWKHGPIYCSEVTGNLLINVM 247

Query: 221 PQLGADAFVEMELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGAFGN----ALHTGD 388
             +       ++L  P  +       TV   DANHCPG+ MF+FE    N     LH GD
Sbjct: 248 -HVDEQYVKRLKLNQPYNIMG----ITVYVLDANHCPGSAMFVFETLQSNQTRRVLHCGD 302

Query: 389 CRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQFPAK----EASIR 556
            R + D +     R  T              I  ++LD T+      FP +    +A   
Sbjct: 303 FRASKDHVMHPVLREKT--------------IHKVYLDTTYLNPKYTFPPQADVVQACAD 348

Query: 557 QVINCIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSKIYI 679
           + I+      +   V + +  +G+E++ + ++++  S+IY+
Sbjct: 349 KAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAKSLSSRIYV 389

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>Q9JIC3:DCR1A_MOUSE DNA cross-link repair 1A protein - Mus musculus (Mouse)|
          Length = 1026

 Score = 68.9 bits (167), Expect = 8e-11
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 11/320 (3%)
 Frame = +2

Query: 113  FLTHAHRDHLAGITTTSAAGAVYASRLTV-LIARHIFPQLGADAFVEMELGAPVLVPDPD 289
            FLTH H DH AG++       VY S +T  L+ + +  Q      + M+    V      
Sbjct: 715  FLTHFHSDHYAGLSKDFTR-PVYCSEITGNLLKKKLRVQEQYIRQLPMDTECVV------ 767

Query: 290  GDFTVTAFDANHCPGAVMFLFEGAFGNA-LHTGDCRLTPDCIQGLPFRYITAEAPGASQA 466
                V   DANHCPGA M LF+   G   LHTGD R  P   +        +   G    
Sbjct: 768  DSVKVVLLDANHCPGATMILFQLPNGAVILHTGDFRADPSMER--------SRLAGR--- 816

Query: 467  PPSCRIDYLFLDCTFAKCPLQFPAKEASIRQVINCIWE----HPNAPTVYLVSDMLGQEE 634
                ++  LFLD T+      FP+++  I+  IN  +E    +P A  V   +  +G+E+
Sbjct: 817  ----KVHTLFLDTTYCSPEYTFPSQQEVIQFAINTAFEAVTLNPRA-LVVCGTYCIGKEK 871

Query: 635  ILIEVSRAFGSKIYIDRDNNSECYHTLS-LVAPE----ILTEDASSRFQVIEFPRLSERA 799
            + + ++   GSK+ +    + E Y TL  L  PE    I T+   S   ++   +++ + 
Sbjct: 872  VFLAIADVLGSKVGM----SQEKYKTLQCLNIPEVSSLITTDMCDSLVHLLPMMQINFKG 927

Query: 800  TDMLALARARQQPEPLIIRPSTQWYAHYAAPEASLKQKPALTEPMQDEFGVWHVCLTMHS 979
                      +  + L  RP+   +++     A       +    +    ++ +  + HS
Sbjct: 928  LQSHLKKCGGKYDQILAFRPTGWTHSNNITSTAD------IIPQTRGNISIYGIPYSEHS 981

Query: 980  SRGELEHALRFLRPKWVIST 1039
            S  E++  +++L+P+ +I T
Sbjct: 982  SYLEMKRFVQWLKPQKIIPT 1001

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>Q5QJC4:DCR1A_CHICK DNA cross-link repair 1A protein - Gallus gallus (Chicken)|
          Length = 972

 Score = 65.1 bits (157), Expect = 1e-09
 Identities = 72/317 (22%), Positives = 128/317 (40%), Gaps = 8/317 (2%)
 Frame = +2

Query: 113  FLTHAHRDHLAGITTTSAAGAVYASRLTVLIARHIFPQLGADAFVEMELGAPVLVPDPD- 289
            FLTH H DH  G+T       +Y +++T  + +              E    VL  D + 
Sbjct: 658  FLTHFHSDHYCGLTKNFVF-PLYCNKITGNLVK--------SKLRVKEQYINVLPMDTEC 708

Query: 290  --GDFTVTAFDANHCPGAVMFLFEGAFGNA-LHTGDCRLTPDCIQGLPFRYITAEAPGAS 460
                  V   DANHCPGA M LF    G A LHTGD R  P        RY         
Sbjct: 709  IVNGIKVLLLDANHCPGATMILFYLPSGTAILHTGDFRADPSM-----ERY--------- 754

Query: 461  QAPPSCRIDYLFLDCTFAKCPLQFPAKEASIRQVINCIWEHPNAPTVYLV---SDMLGQE 631
             A    +I  L+LD T+      FP+++  I+  +N  +E        LV   +  +G+E
Sbjct: 755  PALIGQKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVTLNPRTLVVCGTYSIGKE 814

Query: 632  EILIEVSRAFGSKIYIDRDNNSECYHTLSLVAPEILTED-ASSRFQVIEFPRLSERATDM 808
            ++ + ++   GSK  + RD         S     ++T +   +   ++   +++ +    
Sbjct: 815  KVFLAIAEVLGSKASMSRDKYKTLQCLESAAVNSLITMNWDGTLLHILPMMQINFKGLQD 874

Query: 809  LALARARQQPEPLIIRPSTQWYAHYAAPEASLKQKPALTEPMQDEFGVWHVCLTMHSSRG 988
                 +    + L  +P+   Y+        +K +       +    ++ +  + HSS  
Sbjct: 875  HLNKFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQ------TRGNITIYGIPYSEHSSYL 928

Query: 989  ELEHALRFLRPKWVIST 1039
            E++  +++L+P+ +I T
Sbjct: 929  EMKRFVQWLKPQKIIPT 945

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>P30620:PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 661

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 16/185 (8%)
 Frame = +2

Query: 41  IELPRGLPFAVDTWT-PASALKRHRFLTHAHRDHLAGITTT-------SAAGAVYASRLT 196
           I+   G    VD +   AS      FL+H H DH  G+  +            +Y S++T
Sbjct: 220 IKFNNGHEIVVDGFNYKASETISQYFLSHFHSDHYIGLKKSWNNPDENPIKKTLYCSKIT 279

Query: 197 VLIARHIFPQLGADAFVEMELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGAFGNA- 373
            ++    F ++  D    + +     + D     +V   DANHCPGA++ LF+    N+ 
Sbjct: 280 AILVNLKF-KIPMDEIQILPMNKRFWITDT---ISVVTLDANHCPGAIIMLFQEFLANSY 335

Query: 374 -------LHTGDCRLTPDCIQGLPFRYITAEAPGASQAPPSCRIDYLFLDCTFAKCPLQF 532
                  LHTGD R     I+ +  +++   A        +  ID ++LD T+      F
Sbjct: 336 DKPIRQILHTGDFRSNAKMIETIQ-KWLAETA--------NETIDQVYLDTTYMTMGYNF 386

Query: 533 PAKEA 547
           P++ +
Sbjct: 387 PSQHS 391

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>Q5LMQ6:RPOC_SILPO DNA-directed RNA polymerase beta' chain - Silicibacter pomeroyi|
          Length = 1413

 Score = 37.4 bits (85), Expect = 0.26
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
 Frame = +2

Query: 1184 TTVEAVKQREEEESE--DTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQ 1351
            T  +A K  E+E  E  D    V  +  VL +  P L    I+  +P+ + G+A    P 
Sbjct: 396  TVKQAKKLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPL 455

Query: 1352 DCELWKDEYESVQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDSTQAATEELHG 1531
             C  +  +++  Q+A  V    E Q          + V      A +I  +Q     L+ 
Sbjct: 456  VCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYY 515

Query: 1532 SVLEPEFQ----NDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSR 1699
              LE E        + SID ++  +   EVH ++ IT   A++  D + NE  KR+  + 
Sbjct: 516  LTLEREGMVGEGKIFGSIDEVQHALDAGEVHLHTKITARIAQI--DDEGNEVLKRVETTP 573

Query: 1700 FEVK 1711
              V+
Sbjct: 574  GRVR 577

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>Q06704:IMH1_YEAST Golgin IMH1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 911

 Score = 37.0 bits (84), Expect = 0.34
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
 Frame = +2

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQNSD-TKSSKLWSYVKFDKGIAGVIDSTQAATEEL 1525
            +DCE WK +YE ++   E+K  +EL+NS   KS+K    +  +     +ID+ ++  E+ 
Sbjct: 337  KDCEDWKQKYEDIEA--ELKDAKELENSQLEKSAKELETLNTE-----LIDTKKSLKEK- 388

Query: 1526 HGSVLEPEFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSRFE 1705
              S LE E ++   ++    VD ++DE+ E SS            K NE  K ++L   +
Sbjct: 389  -NSELE-EVRDMLRTVGNELVD-AKDEIKESSS------------KQNEEVKTVKLELDD 433

Query: 1706 VKEESSTARSKF-LEVCKPRESVKLIAETVGKQAKVEATEELLSE 1837
            ++ +++T    +  +  + R  ++L+++      KVE  + L +E
Sbjct: 434  LRHKNATMIEAYEAKNTELRSKIELLSK------KVEHLKNLCTE 472

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>Q82Z41:RPOC_ENTFA DNA-directed RNA polymerase beta' chain - Enterococcus faecalis|
            (Streptococcus faecalis)
          Length = 1217

 Score = 36.6 bits (83), Expect = 0.45
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 1205 QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQDCELWKDEY 1378
            +R E+E  D    V  +  VL +  P L    I+  +PV + GRA    P  CE +  ++
Sbjct: 391  ERGEDEVWDILEEVIQEHPVLLNRAPTLHRLGIQAFEPVLVEGRAIRLHPLVCEAYNADF 450

Query: 1379 ESVQVAEEVKFEEELQ 1426
            +  Q+A  V   EE Q
Sbjct: 451  DGDQMAVHVPLNEEAQ 466

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>P97432:NBR1_MOUSE Next to BRCA1 gene 1 protein - Mus musculus (Mouse)|
          Length = 988

 Score = 36.2 bits (82), Expect = 0.58
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 24/179 (13%)
 Frame = +2

Query: 1151 PTVTGSPQAAITTVEAVKQREEEES--EDTCSAVCSQVLQDEGP-------------VLQ 1285
            P  T S +    T  +V++ EE+ S  +  C  V   +  D  P              LQ
Sbjct: 621  PDSTVSAKRKAETPASVEETEEDLSGTQFVCETVIRSLTLDAAPDHNPPCRQRSPQRELQ 680

Query: 1286 DFAIEVAQPVTLFGRAR------FGLPQDCELWKDEYESVQVAEEV--KFEEELQNSDTK 1441
             ++ E  QP+ L G  R      F LP++     +  E V + EE   + EEE+Q+ + +
Sbjct: 681  LYSTEGQQPLVLPGFCRKDSSLKFALPEEGPRGDEREEIVHIVEEEVVEEEEEVQDEEVQ 740

Query: 1442 SSKLWSYVKFDKGIAGVIDSTQAATEELHGSVL-EPEFQNDYESIDGIRVDISEDEVHE 1615
            S    S   +   +    D+++   + ++ S L +P  +   E   GI   +   E  E
Sbjct: 741  SQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGEPGIESGLEPTEARE 799

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>Q8PTT8:ECX1_METMA Probable exosome complex exonuclease 1 - Methanosarcina mazei|
            (Methanosarcina frisia)
          Length = 493

 Score = 36.2 bits (82), Expect = 0.58
 Identities = 52/245 (21%), Positives = 92/245 (37%)
 Frame = +2

Query: 1166 SPQAAITTVEAVKQREEEESEDTCSAVCSQVLQDEGPVLQDFAIEVAQPVTLFGRARFGL 1345
            SP AAI  VE   +  EE   +    V +++L  E  V+ DF  E+ + +          
Sbjct: 262  SPVAAI--VEETPEEAEEPEVEISEEVEAEILASE--VIPDFEDELEEEIE---EELEES 314

Query: 1346 PQDCELWKDEYESVQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDSTQAATEEL 1525
             +D E  ++E+E   + EE + EE+L+            ++ D G     +  +   EE 
Sbjct: 315  EEDLETEEEEFEEEALEEEAEPEEDLEED----------LEEDLGEELEEEEEELEEEEF 364

Query: 1526 HGSVLEPEFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSRFE 1705
                LE E +          ++ S +   E     E  A L K+    E  + I     E
Sbjct: 365  EEEALEEETE----------LEASLECAPELKEFDEIEARLEKEDASIEAEEEIEPEAEE 414

Query: 1706 VKEESSTARSKFLEVCKPRESVKLIAETVGKQAKVEATEELLSEDRTLLSDISNRSEGPD 1885
              EE     ++  E     E      E +  +A+ E   E   E   + ++     E P+
Sbjct: 415  ATEEGLEEEAEIEETAASEE------ENIEAEAEAEEEAEPEVEAEEISTEAEEAEEEPE 468

Query: 1886 TDRAD 1900
             ++++
Sbjct: 469  EEKSE 473

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>P77917:RPOC_PEDAC DNA-directed RNA polymerase beta' chain - Pediococcus acidilactici|
          Length = 1055

 Score = 35.4 bits (80), Expect = 1.00
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 1208 REEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQDCELWKDEYE 1381
            R++EE  D    V  +  VL +  P L    I+  +PV + G+A    P  CE +  +++
Sbjct: 392  RKDEEVYDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPVLVSGKAMRLHPLACEAYNADFD 451

Query: 1382 SVQVAEEVKFEEELQ 1426
              Q+A  V    E Q
Sbjct: 452  GDQMAIHVPLSNEAQ 466

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>Q5M2F6:RPOC_STRT2 DNA-directed RNA polymerase beta' chain - Streptococcus thermophilus|
            (strain ATCC BAA-250 / LMG 18311)
          Length = 1212

 Score = 35.0 bits (79), Expect = 1.3
 Identities = 26/88 (29%), Positives = 40/88 (45%)
 Frame = +2

Query: 1163 GSPQAAITTVEAVKQREEEESEDTCSAVCSQVLQDEGPVLQDFAIEVAQPVTLFGRARFG 1342
            G+ +AA   VE   +R  +  ED        VL +  P L    I+  +PV + G+A   
Sbjct: 382  GNVKAAKRMVERGDERIWDILEDVIKE--HPVLLNRAPTLHRLGIQAFEPVLIDGKALRL 439

Query: 1343 LPQDCELWKDEYESVQVAEEVKFEEELQ 1426
             P  CE +  +++  Q+A  V   EE Q
Sbjct: 440  HPLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q5LXV4:RPOC_STRT1 DNA-directed RNA polymerase beta' chain - Streptococcus thermophilus|
            (strain CNRZ 1066)
          Length = 1212

 Score = 35.0 bits (79), Expect = 1.3
 Identities = 26/88 (29%), Positives = 40/88 (45%)
 Frame = +2

Query: 1163 GSPQAAITTVEAVKQREEEESEDTCSAVCSQVLQDEGPVLQDFAIEVAQPVTLFGRARFG 1342
            G+ +AA   VE   +R  +  ED        VL +  P L    I+  +PV + G+A   
Sbjct: 382  GNVKAAKRMVERGDERIWDILEDVIKE--HPVLLNRAPTLHRLGIQAFEPVLIDGKALRL 439

Query: 1343 LPQDCELWKDEYESVQVAEEVKFEEELQ 1426
             P  CE +  +++  Q+A  V   EE Q
Sbjct: 440  HPLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>P12839:NFM_RAT Neurofilament medium polypeptide - Rattus norvegicus (Rat)|
          Length = 846

 Score = 35.0 bits (79), Expect = 1.3
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 7/239 (2%)
 Frame = +2

Query: 1142 HGNPTVTGSPQAAITTVEAVKQREEEESEDTCSAVCSQVLQDEGPVLQDFAIEVAQPVTL 1321
            H  P+VT S +   T VEA K + + +  +    +    ++DE   ++D    +A+    
Sbjct: 425  HRQPSVTISSKIQKTKVEAPKLKVQHKFVE--EIIEETKVEDEKSEMEDALTVIAE---- 478

Query: 1322 FGRARFGLPQDCELWKDEYESVQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDS 1501
                        EL     E  + AEE + E E++ S  KS +     + ++G     + 
Sbjct: 479  ------------ELAASAKEEKEEAEEKEEEPEVEKSPVKSPEA---KEEEEGEKEEEEE 523

Query: 1502 TQAATEELHGSVLEPEFQNDYESIDGI--RVDISEDEVHEYSSITEGYAELAKDAKCNEG 1675
             Q   EE    V   + +      +G   + +  ++E  E  +  EG    AK+ K  EG
Sbjct: 524  GQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDEGEQEEEGETEAEGEGEEAEAKEEKKTEG 583

Query: 1676 TKRIRLSRFEVK-EESSTARSKF----LEVCKPRESVKLIAETVGKQAKVEATEELLSE 1837
                   + E+K E+   A+S      +E  KP+   K   +   ++ KVE  +E+  E
Sbjct: 584  KVEEMAIKEEIKVEKPEKAKSPVPKSPVEEVKPKPEAKAGKDEQKEEEKVEEKKEVAKE 642

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>Q8KTH8:RPOC_XANOR DNA-directed RNA polymerase beta' chain - Xanthomonas oryzae pv.|
            oryzae
          Length = 1405

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q2NZX9:RPOC_XANOM DNA-directed RNA polymerase beta' chain - Xanthomonas oryzae pv.|
            oryzae (strain MAFF 311018)
          Length = 1405

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q8PC55:RPOC_XANCP DNA-directed RNA polymerase beta' chain - Xanthomonas campestris pv.|
            campestris
          Length = 1405

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q4URD3:RPOC_XANC8 DNA-directed RNA polymerase beta' chain - Xanthomonas campestris pv.|
            campestris (strain 8004)
          Length = 1405

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q3BWZ0:RPOC_XANC5 DNA-directed RNA polymerase beta' chain - Xanthomonas campestris pv.|
            vesicatoria (strain 85-10)
          Length = 1404

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q8PNS9:RPOC_XANAC DNA-directed RNA polymerase beta' chain - Xanthomonas axonopodis pv.|
            citri
          Length = 1404

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q8DNF1:RPOC_STRR6 DNA-directed RNA polymerase beta' chain - Streptococcus pneumoniae|
            (strain ATCC BAA-255 / R6)
          Length = 1225

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 1181 ITTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGL 1345
            +  V+A K   +R +E   D    V  +  VL +  P L    I+  +PV + G+A    
Sbjct: 381  VQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLH 440

Query: 1346 PQDCELWKDEYESVQVAEEVKFEEELQ 1426
            P  CE +  +++  Q+A  V   EE Q
Sbjct: 441  PLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q97NQ8:RPOC_STRPN DNA-directed RNA polymerase beta' chain - Streptococcus pneumoniae|
          Length = 1225

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 1181 ITTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGL 1345
            +  V+A K   +R +E   D    V  +  VL +  P L    I+  +PV + G+A    
Sbjct: 381  VQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLH 440

Query: 1346 PQDCELWKDEYESVQVAEEVKFEEELQ 1426
            P  CE +  +++  Q+A  V   EE Q
Sbjct: 441  PLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q8E238:RPOC_STRA5 DNA-directed RNA polymerase beta' chain - Streptococcus agalactiae|
            serotype V
          Length = 1216

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 1157 VTGSPQAAITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGR 1330
            + G+ +AA   VE    R +E   D    V  +  VL +  P L    I+  +PV + G+
Sbjct: 380  LAGNVKAAKRMVE----RGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGK 435

Query: 1331 ARFGLPQDCELWKDEYESVQVAEEVKFEEELQ 1426
            A    P  CE +  +++  Q+A  V   EE Q
Sbjct: 436  ALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q8E7J7:RPOC_STRA3 DNA-directed RNA polymerase beta' chain - Streptococcus agalactiae|
            serotype III
          Length = 1216

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 1157 VTGSPQAAITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGR 1330
            + G+ +AA   VE    R +E   D    V  +  VL +  P L    I+  +PV + G+
Sbjct: 380  LAGNVKAAKRMVE----RGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGK 435

Query: 1331 ARFGLPQDCELWKDEYESVQVAEEVKFEEELQ 1426
            A    P  CE +  +++  Q+A  V   EE Q
Sbjct: 436  ALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q3K3L1:RPOC_STRA1 DNA-directed RNA polymerase beta' chain - Streptococcus agalactiae|
            serotype Ia
          Length = 1216

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 1157 VTGSPQAAITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGR 1330
            + G+ +AA   VE    R +E   D    V  +  VL +  P L    I+  +PV + G+
Sbjct: 380  LAGNVKAAKRMVE----RGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGK 435

Query: 1331 ARFGLPQDCELWKDEYESVQVAEEVKFEEELQ 1426
            A    P  CE +  +++  Q+A  V   EE Q
Sbjct: 436  ALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQ 467

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>P30786:PYHD_NPVHZ Polyhedrin - Heliothis zea nuclear polyhedrosis virus (HzSNPV)|
           (Helicoverpa zea single nucleocapsid nuclear
           polyhedrosis virus)
          Length = 246

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 560 VINCIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           + N IWE+   P VY+ +D   +EEIL+EVS  F  K
Sbjct: 196 ITNVIWENFYKPIVYVGTDSAEEEEILLEVSLIFKIK 232

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>O43719:HTSF1_HUMAN HIV Tat-specific factor 1 - Homo sapiens (Human)|
          Length = 755

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 8/257 (3%)
 Frame = +2

Query: 1190 VEAVKQREEEESEDTCSAVCSQVLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQDCELWK 1369
            V   K+ EE++SE      CS+   ++G   ++F                GL +D     
Sbjct: 533  VGPTKESEEDDSEKESDEDCSEKQSEDGSE-REF-------------EENGLEKDL---- 574

Query: 1370 DEYESVQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDSTQAATEELHGSVLEPE 1549
            DE  S +   E   ++EL+ +D+++S+       D G   V+D   +  E    S  + E
Sbjct: 575  DEEGSEKELHENVLDKELEENDSENSEF-----EDDGSEKVLDEEGSEREFDEDSDEKEE 629

Query: 1550 FQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSRFEVKEESSTA 1729
             ++ YE +     D  EDE +      E     A D K  EG    +L      +E   A
Sbjct: 630  EEDTYEKVFDDESDEKEDEEYADEKGLE-----AADKKAEEGDADEKLFEESDDKEDEDA 684

Query: 1730 RSKFLEVCKPR------ESVKLIAETVGKQAKVEATEELL--SEDRTLLSDISNRSEGPD 1885
              K +E    +       + KL  E      + +++E+L   S++R  L    +  EGP 
Sbjct: 685  DGKEVEDADEKLFEDDDSNEKLFDE------EEDSSEKLFDDSDERGTLGGFGSVEEGP- 737

Query: 1886 TDRADTAGVGSSKVLNA 1936
                     GSS +L++
Sbjct: 738  ------LSTGSSFILSS 748

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>Q0JMV4:AMYC1_ORYSJ Alpha-amylase isozyme C - Oryza sativa subsp. japonica (Rice)|
          Length = 348

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
 Frame = -1

Query: 369 LPKAPSNRNITAPGQWLASKAVTVKSPSGSGTRTGAPSSISTNASAPS*GKMWRAMRTVR 190
           LP+ P  R    PG    +   +  + SGS             +SA S G  W +  T  
Sbjct: 142 LPRRPLRRRHRKPGHRRRTSTTSTSASSGS-------------SSAGSTGSRWTSAST-- 186

Query: 189 REA*TAPAAL-------VVVMPARWSRWAWVRKRWRLRAEAG---VQVSTAKGSPLGSSI 40
           R A T+P A          + P+R S W    +RWR    A     +  T +    GS +
Sbjct: 187 RGASTSPRATPPTWQRSTSMPPSRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIV 246

Query: 39  GMASLFLPR 13
             A   +PR
Sbjct: 247 SAAPTAMPR 255

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>A2WPU3:AMYC1_ORYSI Alpha-amylase isozyme C - Oryza sativa subsp. indica (Rice)|
          Length = 348

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
 Frame = -1

Query: 369 LPKAPSNRNITAPGQWLASKAVTVKSPSGSGTRTGAPSSISTNASAPS*GKMWRAMRTVR 190
           LP+ P  R    PG    +   +  + SGS             +SA S G  W +  T  
Sbjct: 142 LPRRPLRRRHRKPGHRRRTSTTSTSASSGS-------------SSAGSTGSRWTSAST-- 186

Query: 189 REA*TAPAAL-------VVVMPARWSRWAWVRKRWRLRAEAG---VQVSTAKGSPLGSSI 40
           R A T+P A          + P+R S W    +RWR    A     +  T +    GS +
Sbjct: 187 RGASTSPRATPPTWQRSTSMPPSRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIV 246

Query: 39  GMASLFLPR 13
             A   +PR
Sbjct: 247 SAAPTAMPR 255

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>Q9PA87:RPOC_XYLFA DNA-directed RNA polymerase beta' chain - Xylella fastidiosa|
          Length = 1407

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE E  D    V S+  V+ +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREEAEVWDILEEVISEHPVVLNRAPTLHRQGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q48VR0:RPOC_STRPM DNA-directed RNA polymerase beta' chain - Streptococcus pyogenes|
            serotype M28
          Length = 1213

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQD 1354
            +   + + +R +E   D    V  +  VL +  P L    I+  +PV + G+A    P  
Sbjct: 384  VKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLV 443

Query: 1355 CELWKDEYESVQVAEEVKFEEELQ 1426
            CE +  +++  Q+A  V   EE Q
Sbjct: 444  CEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q8P2Y2:RPOC_STRP8 DNA-directed RNA polymerase beta' chain - Streptococcus pyogenes|
            serotype M18
          Length = 1213

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQD 1354
            +   + + +R +E   D    V  +  VL +  P L    I+  +PV + G+A    P  
Sbjct: 384  VKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLV 443

Query: 1355 CELWKDEYESVQVAEEVKFEEELQ 1426
            CE +  +++  Q+A  V   EE Q
Sbjct: 444  CEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q5XE96:RPOC_STRP6 DNA-directed RNA polymerase beta' chain - Streptococcus pyogenes|
            serotype M6
          Length = 1213

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQD 1354
            +   + + +R +E   D    V  +  VL +  P L    I+  +PV + G+A    P  
Sbjct: 384  VKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLV 443

Query: 1355 CELWKDEYESVQVAEEVKFEEELQ 1426
            CE +  +++  Q+A  V   EE Q
Sbjct: 444  CEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q8K8W2:RPOC_STRP3 DNA-directed RNA polymerase beta' chain - Streptococcus pyogenes|
            serotype M3
          Length = 1207

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQD 1354
            +   + + +R +E   D    V  +  VL +  P L    I+  +PV + G+A    P  
Sbjct: 384  VKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLV 443

Query: 1355 CELWKDEYESVQVAEEVKFEEELQ 1426
            CE +  +++  Q+A  V   EE Q
Sbjct: 444  CEAYNADFDGDQMAIHVPLSEEAQ 467

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>P0C0E0:RPOC_STRP1 DNA-directed RNA polymerase beta' chain - Streptococcus pyogenes|
            serotype M1
          Length = 1213

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQD 1354
            +   + + +R +E   D    V  +  VL +  P L    I+  +PV + G+A    P  
Sbjct: 384  VKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLV 443

Query: 1355 CELWKDEYESVQVAEEVKFEEELQ 1426
            CE +  +++  Q+A  V   EE Q
Sbjct: 444  CEAYNADFDGDQMAIHVPLSEEAQ 467

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>Q9CEN7:RPOC_LACLA DNA-directed RNA polymerase beta' chain - Lactococcus lactis subsp.|
            lactis (Streptococcus lactis)
          Length = 1207

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +2

Query: 1175 AAITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            A I   +   +R++ +  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 382  ANIRAAKRKVERQDSDVWDVLETVVKEHPVLLNRAPTLHRLGIQAFEPVLIDGKAIRLHP 441

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              CE +  +++  Q+A  +   EE Q
Sbjct: 442  LACEAYNADFDGDQMAIHLPLSEEAQ 467

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>Q5BJD2:CO043_DANRE Uncharacterized protein C15orf43 homolog - Danio rerio (Zebrafish)|
            (Brachydanio rerio)
          Length = 212

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +2

Query: 1628 TEGYAELAKDAKCNEGTKRIRLSRFEVKEESSTARSKFLEVCKPRESV 1771
            T GY  L  D   +E TKRI  S   VK  ++   S FL  C+PR+SV
Sbjct: 33   TAGY--LFSDDASSEDTKRIYGSEDYVKNRATVFHSSFLLACQPRQSV 78

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>Q4FM95:TIG_PELUB Trigger factor - Pelagibacter ubique|
          Length = 477

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 1691 LSRFEVKEESSTARSKFLEVCKPRESVKLIAETVGKQAKVEATEE 1825
            LS+   +E+S  +R  F E+ K R  V LI    G+Q K++ TE+
Sbjct: 314  LSQGMTEEDSKKSRKNFEEIAKKRIKVGLILNEFGEQNKIKVTEQ 358

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>Q92543:SNX19_HUMAN Sorting nexin-19 - Homo sapiens (Human)|
          Length = 992

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 24/242 (9%)
 Frame = +2

Query: 1253 QVLQDEGPVLQDFAIEVAQPVTLFGRARFG-LPQD-CELWKDEYES----VQVAEEVKFE 1414
            Q   +E P L+ F   V  P  LF    FG +  D  E  K   ES    +    E+   
Sbjct: 590  QTRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMDSDRVEARKSLLESFLKQLCAIPEIANS 649

Query: 1415 EELQ-----NSDTKSS---KLWSYVKFDKGIAGVIDST----------QAATEELHGSVL 1540
            EE+Q     N+D + +   K +   + DK +   I  T          Q+ TEEL  +  
Sbjct: 650  EEVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAET 709

Query: 1541 EPEFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSRFEVKEES 1720
            E + Q + +     R+  S  ++    S+TE   ++    +  EG+           E  
Sbjct: 710  ESKPQTEGKKASKSRLRFSSSKISPALSVTEAQDKILYCLQ--EGSVESETLSMSAMESF 767

Query: 1721 STARSKFLEVCKPRESVKLIAETVGKQAKVEATEELLSEDRTLLSDISNRSEGPDTDRAD 1900
               ++K LE+ +P ++     E   +Q      +  +S+      D SN   G +T+ AD
Sbjct: 768  IEKQTKLLEM-QPTKA----PEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELAD 822

Query: 1901 TA 1906
            TA
Sbjct: 823  TA 824

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>Q8DS47:RPOC_STRMU DNA-directed RNA polymerase beta' chain - Streptococcus mutans|
          Length = 1209

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 1181 ITTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGL 1345
            +  V+A K   +R ++   D    V  +  VL +  P L    I+  +PV + G+A    
Sbjct: 381  VQNVKAAKRLIERGDDRIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLH 440

Query: 1346 PQDCELWKDEYESVQVAEEVKFEEELQ 1426
            P  CE +  +++  Q+A  V   EE Q
Sbjct: 441  PLACEAYNADFDGDQMAIHVPLSEEAQ 467

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>P32373:PYHD_NPVHC Polyhedrin - Hyphantria cunea nuclear polyhedrosis virus (HcNPV)|
          Length = 245

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 548 SIRQVIN-CIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           S  Q +N  IWE+   P VY+ +D   +EEILIEVS  F  K
Sbjct: 190 SFEQFVNRVIWENFYKPIVYIGTDSGEEEEILIEVSLVFKVK 231

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>Q501R9:NBR1_RAT Next to BRCA1 gene 1 protein - Rattus norvegicus (Rat)|
          Length = 983

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 23/179 (12%)
 Frame = +2

Query: 1148 NPTVTGSPQAAITTVEAVKQREEEES--EDTCSAVCSQVLQDEGP-------------VL 1282
            +P  T   +    T  +V++ EE+ S  +  C  V   +  D  P              L
Sbjct: 621  SPDSTVLTKRKAETPASVEETEEDLSGTQFVCETVIRSLTLDAAPDHNPPCRQRSPQREL 680

Query: 1283 QDFAIEVAQPVTLFGRAR------FGLPQDCELWKDEYESVQVAEEVKFEEE-LQNSDTK 1441
            Q ++ E  QP+ L G  R      F LP++     +  E V +AEE   EEE +Q+ + +
Sbjct: 681  QLYSTEEQQPLMLPGFCRKDSSLKFALPEEGPHGDEREEIVHIAEEEAIEEEDVQDEEVQ 740

Query: 1442 SSKLWSYVKFDKGIAGVIDSTQAATEELHGSVL-EPEFQNDYESIDGIRVDISEDEVHE 1615
            S    S   +   +    D+++   + ++ S L +P  +   E   GI       E  E
Sbjct: 741  SQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGEPGIESGQEPAEARE 799

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>Q8L785:SYGM2_ARATH Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor -|
            Arabidopsis thaliana (Mouse-ear cress)
          Length = 1067

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 57/258 (22%), Positives = 95/258 (36%), Gaps = 24/258 (9%)
 Frame = +2

Query: 1133 RIPHGNPTVTGSPQAAITTVEAVKQREEEESEDTCSAVCSQVLQDEG---PVLQDFAIEV 1303
            R+ HG     G+P+  +  V+A+  ++ EE  +      S+   DEG      + F+   
Sbjct: 419  RLRHGAVKAFGTPRRLVVLVDAMSSKQLEEEVEVRGPPASKAFDDEGNPTKAAEGFSRRY 478

Query: 1304 AQPVTLFGRARFGLPQDCELWKDEYESVQVAEEVKFEEELQNSD----------TKSSKL 1453
              P+    R   G        K EY   +V E  +   E+ + D           KS + 
Sbjct: 479  GVPLEKLYRKVSG--------KTEYVHARVTEPARLALEVLSEDLPGILAKISFPKSMRW 530

Query: 1454 WSYVKFDKGIAGVIDSTQAATEELHGSVLEPEFQNDYESIDGIRVDISEDEVHEYSSITE 1633
             S V F + I  V+         LHG ++ P     +  I    V          S + +
Sbjct: 531  NSSVMFSRPIRWVM--------ALHGDLVVP---FSFAGISSGNVSCGLRNTASASLLVQ 579

Query: 1634 GYAELAKDAKCNEGTKRIRLSRFEVKEESSTARSKFL--EVCKPRESVKLIAETVG---- 1795
              AE  +D   N G       R ++  E S A +K +   +  P+  +  +A  V     
Sbjct: 580  N-AESYEDTMRNSGINIEIEERKKIILEKSNALAKSVSGRLVVPQNLLNEVANLVEAPVP 638

Query: 1796 -----KQAKVEATEELLS 1834
                 K++ +E  EELL+
Sbjct: 639  LIGKFKESFLELPEELLT 656

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>Q3J5S9:RPOC_RHOS4 DNA-directed RNA polymerase beta' chain - Rhodobacter sphaeroides|
            (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
          Length = 1415

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
 Frame = +2

Query: 1184 TTVEAVKQREEEESE--DTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQ 1351
            T  +A K  E+E  E  D    V  +  VL +  P L    I+  +P+ + G+A    P 
Sbjct: 396  TVKQAKKLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPL 455

Query: 1352 DCELWKDEYESVQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDSTQAATEELHG 1531
             C  +  +++  Q+A  V    E Q          + V      A +I  +Q     L+ 
Sbjct: 456  VCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYY 515

Query: 1532 SVLEPEFQND----YESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKR 1684
            + +E          + S++ +   ++  EVH +++IT    ++  D + NE  KR
Sbjct: 516  TTMERRGMKGEGMAFSSVEEVEHALAAGEVHLHATITARIKQI--DEEGNEVVKR 568

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>P03237:PYHD_NPVBM Polyhedrin - Bombyx mori nuclear polyhedrosis virus (BmNPV)|
          Length = 245

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 572 IWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           IWE+   P VY+ +D   +EEILIEVS  F  K
Sbjct: 199 IWENFYKPIVYIGTDSAEEEEILIEVSLVFKIK 231

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>P14328:SP96_DICDI Spore coat protein SP96 - Dictyostelium discoideum (Slime mold)|
          Length = 600

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 25/82 (30%), Positives = 40/82 (48%)
 Frame = -1

Query: 471 GGAWLAPGASAVMYLNGRPWMQSGVRRQSPVCRALPKAPSNRNITAPGQWLASKAVTVKS 292
           G + ++  AS     +  P   S     SP   A   +PS+   +A     +S A +  S
Sbjct: 442 GSSAVSSSASGSSAASSSP--SSSAASSSPSSSAASSSPSS---SAASSSPSSSASSSSS 496

Query: 291 PSGSGTRTGAPSSISTNASAPS 226
           PS S + + APSS ++++SAPS
Sbjct: 497 PSSSASSSSAPSSSASSSSAPS 518

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>P02854:VCLB_PEA Provicilin precursor - Pisum sativum (Garden pea)|
          Length = 410

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 1490 VIDSTQAATEELHG---SVLEPEFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDA 1660
            ++  TQ     L G   ++LE  F  +YE I+ + ++  E E     S+ +   E+    
Sbjct: 150  LLSGTQNQKSSLSGFSKNILEAAFNTNYEEIEKVLLEQQEQEPQHRRSLKDRRQEI---- 205

Query: 1661 KCNEGTKRIRLSRFEVKEESSTARS 1735
              NE    +++SR +++E S  A+S
Sbjct: 206  --NEENVIVKVSRDQIEELSKNAKS 228

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>Q3ILP8:RPOC_PSEHT DNA-directed RNA polymerase beta' chain - Pseudoalteromonas|
            haloplanktis (strain TAC 125)
          Length = 1390

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D    V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVEREMPEVWDVLDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIHLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTIEAQ 477

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>Q88XZ2:RPOC_LACPL DNA-directed RNA polymerase beta' chain - Lactobacillus plantarum|
          Length = 1213

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +2

Query: 1205 QREEEESEDTCSAVCSQVLQDE------GPVLQDFAIEVAQPVTLFGRARFGLPQDCELW 1366
            +R+ E ++D    V   V+++        P L    I+  +PV + G+A    P  CE +
Sbjct: 387  KRKIEHADDDVWGVLEDVIKEHPVLLNRAPTLHRLGIQAFEPVLVSGKAMRLHPLACEAY 446

Query: 1367 KDEYESVQVAEEVKFEEELQ 1426
              +++  Q+A  V   +E Q
Sbjct: 447  NADFDGDQMAIHVPLSDEAQ 466

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>Q89B21:RPOC_BUCBP DNA-directed RNA polymerase beta' chain - Buchnera aphidicola subsp.|
            Baizongia pistaciae
          Length = 1404

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE    D    V  +  VL +  P L    I+  +P+ + G+A    P
Sbjct: 392  TTIKAAKKMVEREESIVWDILDEVIHEHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V   +E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTKEAQ 477

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>P22115:PYHD_NPVPF Polyhedrin - Panolis flammea multiple nucleocapsid polyhedrosis|
           virus (PfMNPV)
          Length = 246

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 548 SIRQVIN-CIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           S  + IN  IWE+   P VY+ +D   +EEIL+EVS  F  K
Sbjct: 191 SFEEFINRVIWENFYKPIVYVGTDSAEEEEILLEVSLVFKIK 232

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>P07488:PYHD_NPVOP Polyhedrin - Orgyia pseudotsugata multicapsid polyhedrosis virus|
           (OpMNPV)
          Length = 245

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 572 IWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           IWE+   P VY+ +D   +EEILIEVS  F  K
Sbjct: 199 IWENFYKPIVYIGTDSSEEEEILIEVSLVFKVK 231

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>P12423:PYHD_NPVMB Polyhedrin - Mamestra brassicae nuclear polyhedrosis virus (MbNPV)|
          Length = 246

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 548 SIRQVIN-CIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           S  + IN  IWE+   P VY+ +D   +EEIL+EVS  F  K
Sbjct: 191 SFEEFINRVIWENFYKPIVYVGTDSAEEEEILLEVSLVFKIK 232

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>P33732:PYHD_NPVBS Polyhedrin - Buzura suppressaria nuclear polyhedrosis virus (BsNPV)|
          Length = 246

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 548 SIRQVIN-CIWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           S  + IN  IWE+   P VY+ +D   +EEIL+EVS  F  K
Sbjct: 191 SFEEFINRVIWENFYKPIVYVGTDSAEEEEILLEVSLVFKVK 232

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>P14599:A4_DROME Beta-amyloid-like protein precursor - Drosophila melanogaster|
           (Fruit fly)
          Length = 887

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -1

Query: 465 AWLAPGASAVMYLNGRPWMQSGVRRQSPVCRALPKAP-SNRNITAPGQWLASKAVTVKSP 289
           +W   G + V+ L       S     +PV  A  KAP  + ++T+  Q  AS A  V + 
Sbjct: 322 SWDQSGGAKVVSLKS----DSSSPSSAPVAPAPEKAPVKSESVTSTPQLSASAAAFVAAN 377

Query: 288 SG-SGTRTGAPSSISTNASAP 229
           SG SGT  GAP S +   S P
Sbjct: 378 SGNSGTGAGAPPSTAQPTSDP 398

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>P13918:VCLC_PEA Vicilin precursor - Pisum sativum (Garden pea)|
          Length = 459

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 1532 SVLEPEFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSRFEVK 1711
            ++LE  F  DYE I+ + ++  E E     S+ +      K  +  E    ++LSR +++
Sbjct: 180  NILEASFNTDYEEIEKVLLEEHEKETQHRRSLKD------KRQQSQEENVIVKLSRGQIE 233

Query: 1712 EESSTARS 1735
            E S  A+S
Sbjct: 234  ELSKNAKS 241

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>Q87A33:RPOC_XYLFT DNA-directed RNA polymerase beta' chain - Xylella fastidiosa (strain|
            Temecula1 / ATCC 700964)
          Length = 1407

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++  K   +REE E  D    V S+  V+ +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKGAKKLVEREEAEVWDILEEVISEHPVVLNRAPTLHRQGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCTAFNADFDGDQMAVHVPLSLEAQ 477

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>Q1Q8Q0:RPOC_PSYCK DNA-directed RNA polymerase beta' chain - Psychrobacter|
            cryohalolentis (strain K5)
          Length = 1399

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE +  D  + V  +  VL +  P L    ++  +PV + G+A    P
Sbjct: 387  TTIKAAKKMVEREEPQVWDMLAMVIREHPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHP 446

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 447  LVCTAFNADFDGDQMAVHVPLTLEAQ 472

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>Q4FQH4:RPOC_PSYAR DNA-directed RNA polymerase beta' chain - Psychrobacter arcticum|
          Length = 1406

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +REE +  D  + V  +  VL +  P L    ++  +PV + G+A    P
Sbjct: 394  TTIKAAKKMVEREEPQVWDMLAMVIREHPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHP 453

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 454  LVCTAFNADFDGDQMAVHVPLTLEAQ 479

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>P19176:RPOC_PSEPU DNA-directed RNA polymerase beta' chain - Pseudomonas putida|
          Length = 1398

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A +V    E Q
Sbjct: 452  LVCARYNADFDGDQMAVDVPLTLEAQ 477

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>Q2RFP0:RPOC_MOOTA DNA-directed RNA polymerase beta' chain - Moorella thermoacetica|
            (strain ATCC 39073)
          Length = 1164

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLPQD 1354
            I + + + +R + E  D    V S+  VL +  P L    I+  +PV + GRA    P  
Sbjct: 383  IKSAKRMVERVKNEVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLV 442

Query: 1355 CELWKDEYESVQVAEEVKFEEELQ 1426
            C  +  +++  Q+A  V    E Q
Sbjct: 443  CTAYNADFDGDQMAVHVPLSAEAQ 466

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>Q890N5:RPOC_CLOTE DNA-directed RNA polymerase beta' chain - Clostridium tetani|
          Length = 1135

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 1157 VTGSPQAAITTVEAVKQREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGR 1330
            V G     I + + + +R + E  D    V S   VL +  P L    I+  QPV + GR
Sbjct: 376  VQGGLSHNIKSAKRMVERVQSEVWDVLEEVISDHPVLLNRAPTLHRLGIQAFQPVLVEGR 435

Query: 1331 ARFGLPQDCELWKDEYESVQVAEEVKFEEELQ 1426
            A    P  C  +  +++  Q+A  +    E Q
Sbjct: 436  AIKLHPLVCTAYNADFDGDQMAVHLPLSVEAQ 467

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>Q25469:PYHD_NPVMN Polyhedrin - Malacosoma neustria nuclear polyhedrosis virus (MnNPV)|
          Length = 245

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 572 IWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           IWE+   P VY+ +D   +EEIL+EVS  F  K
Sbjct: 199 IWENFYKPLVYIGTDSAEEEEILLEVSLVFKIK 231

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>P04871:PYHD_NPVAC Polyhedrin - Autographa californica nuclear polyhedrosis virus|
           (AcMNPV)
          Length = 245

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 572 IWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           IWE+   P VY+ +D   +EEIL+EVS  F  K
Sbjct: 199 IWENFYKPIVYIGTDSAEEEEILLEVSLVFKVK 231

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>Q5ZIH0:INT11_CHICK Integrator complex subunit 11 - Gallus gallus (Chicken)|
          Length = 600

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +2

Query: 287 DGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPDCIQGLPFRYITAEAPGASQA 466
           D +  + A+ A H  GA MF  +    + ++TGD  +TPD       R++     GA+  
Sbjct: 145 DEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPD-------RHL-----GAAWI 192

Query: 467 PPSCRIDYLFLDCTFA 514
              CR D L  + T+A
Sbjct: 193 -DKCRPDLLITESTYA 207

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>Q895I8:FTSK_CLOTE DNA translocase ftsK - Clostridium tetani|
          Length = 743

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
 Frame = +2

Query: 1385 VQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDSTQAATEELHGSVLEP------ 1546
            +++ + +K     +N DTK +K     K    I G  D  +   EE+  + L+       
Sbjct: 218  IKIIDFIKNTNIEENDDTKENKPIQKGKDSNNIQGEKDINKELEEEMSKAALKTIDYEFP 277

Query: 1547 --EFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDAKCNEGTKRIRLSRFEVKEES 1720
              +  ND +SI  ++ +  ++ ++  + + E       +AK  + TK   ++RFE++   
Sbjct: 278  SIDLLNDNKSIK-LKKEDKKELLNNANKLEETLTSFGVEAKVTQVTKGPSVTRFELQPSV 336

Query: 1721 STARSKFLEVCK------PRESVKLIAETVGKQA 1804
                SK + +          + V++ A   GK A
Sbjct: 337  GVKVSKIVHLADDIALNLAAQDVRIEAPIPGKSA 370

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>Q6F0Q5:EFTS_MESFL Elongation factor Ts - Mesoplasma florum (Acholeplasma florum)|
          Length = 297

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +2

Query: 1379 ESVQVAEEVKFEEELQNSDTKSSKLWSYVKFDKGIAGVIDSTQAATEELHGSVLEPEFQN 1558
            E +Q+      E+E  N+ T  +     V       G +DST A    +H + + P+   
Sbjct: 134  EKIQLRRFTLIEKEAGNTTTLYNHANKRVSVALNFKGTLDSTDAYNLAMHVAAMSPQ--- 190

Query: 1559 DYESIDGIRVDISEDE 1606
             Y+SID I  +  E E
Sbjct: 191  -YKSIDEIPAEFKESE 205

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>Q2LQ86:RPOC_SYNAS DNA-directed RNA polymerase beta' chain - Syntrophus aciditrophicus|
            (strain SB)
          Length = 1381

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 1181 ITTVEAVKQREEEESEDTCSAVCS-----QVLQDEGPVLQDFAIEVAQPVTLFGRARFGL 1345
            +TTV++ K+  E E+ +   A+        V+ +  P L    ++  +PV + G+A    
Sbjct: 392  VTTVKSAKKMVERETAEVWDALDEVVREYPVMLNRAPTLHRLGLQAFEPVLIEGKAIQLH 451

Query: 1346 PQDCELWKDEYESVQVAEEVKFEEELQ 1426
            P  C  +  +++  Q+A  V    E Q
Sbjct: 452  PLVCTAFNADFDGDQMAVHVPLSIEAQ 478

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>Q4ZMN8:RPOC_PSEU2 DNA-directed RNA polymerase beta' chain - Pseudomonas syringae pv.|
            syringae (strain B728a)
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q889X7:RPOC_PSESM DNA-directed RNA polymerase beta' chain - Pseudomonas syringae pv.|
            tomato
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q88QP1:RPOC_PSEPK DNA-directed RNA polymerase beta' chain - Pseudomonas putida (strain|
            KT2440)
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q3K5Y2:RPOC_PSEPF DNA-directed RNA polymerase beta' chain - Pseudomonas fluorescens|
            (strain PfO-1)
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q4K527:RPOC_PSEF5 DNA-directed RNA polymerase beta' chain - Pseudomonas fluorescens|
            (strain Pf-5 / ATCC BAA-477)
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q9HWC9:RPOC_PSEAE DNA-directed RNA polymerase beta' chain - Pseudomonas aeruginosa|
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q48D30:RPOC_PSE14 DNA-directed RNA polymerase beta' chain - Pseudomonas syringae pv.|
            phaseolicola (strain 1448A / Race 6)
          Length = 1399

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D  + V  +  VL +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTLEAQ 477

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>Q47UW0:RPOC_COLP3 DNA-directed RNA polymerase beta' chain - Colwellia psychrerythraea|
            (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
          Length = 1406

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 1184 TTVEAVK---QREEEESEDTCSAVCSQ--VLQDEGPVLQDFAIEVAQPVTLFGRARFGLP 1348
            TT++A K   +RE  E  D    V  +  V+ +  P L    I+  +PV + G+A    P
Sbjct: 392  TTIKAAKKLVEREGAEVWDVLDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIHLHP 451

Query: 1349 QDCELWKDEYESVQVAEEVKFEEELQ 1426
              C  +  +++  Q+A  V    E Q
Sbjct: 452  LVCAAYNADFDGDQMAVHVPLTIEAQ 477

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>P81472:PYHD_NPVAG Polyhedrin - Anticarsia gemmatalis nuclear polyhedrosis virus|
           (AgMNPV)
          Length = 245

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 572 IWEHPNAPTVYLVSDMLGQEEILIEVSRAFGSK 670
           IWE+   P VY+ +D   +EEILIEVS  F  K
Sbjct: 199 IWENFYKPIVYIGTDSGEEEEILIEVSLVFKVK 231

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>Q9UKX3:MYH13_HUMAN Myosin-13 - Homo sapiens (Human)|
          Length = 1938

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 52/258 (20%), Positives = 106/258 (41%), Gaps = 17/258 (6%)
 Frame = +2

Query: 1157 VTGSPQAAITTVEAVKQREEEESE-DTCSAVCSQVLQDEGPVLQDFAIEVAQPVTLFGRA 1333
            +T S QA    +E +K++ EEE++     A   Q  + +  +L++   E  +      RA
Sbjct: 1305 LTKSKQALTQQLEELKRQMEEETKAKNAMAHALQSSRHDCDLLREQYEEEQEAKAELQRA 1364

Query: 1334 RFGLPQDCELWKDEYE--SVQVAEEV---------KFEEELQNSDTKSSKLWSYVKFDKG 1480
                  +   WK +YE  ++Q  EE+         + +E  + ++T +SK  S  K  + 
Sbjct: 1365 LSKANSEVAQWKTKYETDAIQRTEELEEAKKKLAQRLQEAEEKTETANSKCASLEKTKQR 1424

Query: 1481 IAGVIDSTQAATEELHGSVLEPEFQNDYESIDGIRVDISEDEVHEYSSITEGYAELAKDA 1660
            + G ++      E  H +           ++D  + +  +        + E  AEL    
Sbjct: 1425 LQGEVEDLMRDLERSHTAC---------ATLDKKQRNFDKVLAEWKQKLDESQAELEAAQ 1475

Query: 1661 KCNEGTK----RIRLSRFEVKEESSTARSKFLEVCKP-RESVKLIAETVGKQAKVEATEE 1825
            K +        ++R +  EV ++  T R +   + +   +  + IAET     + E T++
Sbjct: 1476 KESRSLSTELFKMRNAYEEVVDQLETLRRENKNLQEEISDLTEQIAETGKNLQEAEKTKK 1535

Query: 1826 LLSEDRTLLSDISNRSEG 1879
            L+ ++++ L       EG
Sbjct: 1536 LVEQEKSDLQVALEEVEG 1553

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>Q3MHC2:INT11_RAT Integrator complex subunit 11 - Rattus norvegicus (Rat)|
          Length = 600

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 287 DGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPD 406
           D +  + A+ A H  GA MF  +    + ++TGD  +TPD
Sbjct: 145 DDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184

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>Q5NVE6:INT11_PONPY Integrator complex subunit 11 - Pongo pygmaeus (Orangutan)|
          Length = 600

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 287 DGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPD 406
           D +  + A+ A H  GA MF  +    + ++TGD  +TPD
Sbjct: 145 DDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184

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>Q9CWS4:INT11_MOUSE Integrator complex subunit 11 - Mus musculus (Mouse)|
          Length = 600

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 287 DGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPD 406
           D +  + A+ A H  GA MF  +    + ++TGD  +TPD
Sbjct: 145 DDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184

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>Q5TA45:INT11_HUMAN Integrator complex subunit 11 - Homo sapiens (Human)|
          Length = 600

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 287 DGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPD 406
           D +  + A+ A H  GA MF  +    + ++TGD  +TPD
Sbjct: 145 DDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184

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>Q2YDM2:INT11_BOVIN Integrator complex subunit 11 - Bos taurus (Bovine)|
          Length = 599

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 287 DGDFTVTAFDANHCPGAVMFLFEGAFGNALHTGDCRLTPD 406
           D +  + A+ A H  GA MF  +    + ++TGD  +TPD
Sbjct: 145 DDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPD 184

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>Q9VYB0:BTHD_DROME Selenoprotein BthD precursor - Drosophila melanogaster (Fruit fly)|
          Length = 249

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +2

Query: 1643 ELAKDAKCNEGTKRIRLSRFEVKEESSTARSKFLEVCKPRESVKLIAETVG--KQAKVEA 1816
            E A++ K    T   R S+ E K E    +    E  + +E VK   +     KQAK   
Sbjct: 155  EEAQENKAPTSTSTSRKSKKEQKSEEEPTQVDSKEAKQSKELVKTKRQPKAQKKQAKASE 214

Query: 1817 TEELLSEDRTLLSDISNRSEGPDTDRADTAG 1909
            ++E ++ED+   S    R+    TD A TAG
Sbjct: 215  SQEEVAEDKPPSSQKRKRTTRSSTDEA-TAG 244

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>Q2UN27:PTPA1_ASPOR Serine/threonine-protein phosphatase 2A activator 1 - Aspergillus|
           oryzae
          Length = 478

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 417 PWMQSGVRRQSPVCRALPKAPSNRNITAPGQWLASKAVTVKSPSGSGTRTGAPSSISTNA 238
           PW  S   R+ P    +P A  + +   PG    ++A    S       TG P+ I+T A
Sbjct: 415 PWATSRAGREPPTTSRIPSALPDTSRLPPGPMAPTRAPWASSQPAGPAPTGDPNDITTKA 474


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 380,442,834
Number of extensions: 8637420
Number of successful extensions: 27285
Number of sequences better than 10.0: 95
Number of HSP's gapped: 27223
Number of HSP's successfully gapped: 95
Length of query: 734
Length of database: 100,686,439
Length adjustment: 121
Effective length of query: 613
Effective length of database: 67,496,744
Effective search space: 41375504072
Effective search space used: 41375504072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result