ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf148i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9UQ35:SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 -... 32 5.3
2Q6BK66:CCS1_DEBHA Superoxide dismutase 1 copper chaperone - Deba... 32 6.9

>Q9UQ35:SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 - Homo sapiens (Human)|
          Length = 2752
 Score = 32.0 bits (71), Expect = 5.3
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
 Frame = +2

Query: 329 RKPRTKPMMPASLTRXXXXXXXXXXXXXSRATHSLRRQSPRRPPTKRHRRLK-------- 484
           R+ R+    PA  TR             SR+    RR+S  R PT+R  R +        
Sbjct: 558 RRGRSHSRSPA--TRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS 615

Query: 485 KAKSPT-------SPRQRQGRNNHPTRRTGR 556
           ++++P        SP +R+ R+  P RR+GR
Sbjct: 616 RSRTPARRRSRTRSPVRRRSRSRSPARRSGR 646



 Score = 31.6 bits (70), Expect = 6.9
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = +2

Query: 314 QRAKVRKPRTKPMMPASLTRXXXXXXXXXXXXXSRATHSLRRQSPRRPPTKRHRRLK--- 484
           +R++ R P  +     +  R             SR    +RR+S  R P +R  R +   
Sbjct: 592 RRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRT 651

Query: 485 -----KAKSPTSPRQRQGRNNHPTRRTGR 556
                +++S T  R+ + R+  P RR+GR
Sbjct: 652 PARRGRSRSRTPARRGRSRSRTPARRSGR 680



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>Q6BK66:CCS1_DEBHA Superoxide dismutase 1 copper chaperone - Debaryomyces hansenii|
           (Yeast) (Torulaspora hansenii)
          Length = 250

 Score = 31.6 bits (70), Expect = 6.9
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 79  VVLRVSIHCEGCXXXXXXXXXHVDGVFRCDIDARSNRVAVTTSTKIDAGILIARLRKSGK 258
           +V  V + C+ C          ++G+ + DID +SN   VTT   +    ++  ++ +GK
Sbjct: 7   IVFAVPMECQSCVDSVSLSLKSLNGISKYDIDLKSN--LVTTEGSVPPSEIVKAIQSTGK 64


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 142,011,234
Number of extensions: 2316338
Number of successful extensions: 6307
Number of sequences better than 10.0: 2
Number of HSP's gapped: 6288
Number of HSP's successfully gapped: 3
Length of query: 403
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 288
Effective length of database: 69,142,514
Effective search space: 19913044032
Effective search space used: 19913044032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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