ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf143j18 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g66960:12001.t06054:unspliced-genomic selenoprotein precursor, putative, expressed| Length = 3596 Score = 140 bits (301), Expect(4) = 8e-70 Identities = 55/62 (88%), Positives = 60/62 (96%) Frame = +3 / +3 Query: 327 KLVYSGAIIEVCMRKLVFYPEVVGFLEEDKDDFPYVESRYAYGSPPKLIMLDDKGEQKET 506 +L +SGAIIEVCMRKLVFYPE+VGFLEEDKDDFPYVE+RY YGSPPKLIMLDDKG+QKET Sbjct: 1521 QLTFSGAIIEVCMRKLVFYPEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKET 1700 Query: 507 IR 512 IR Sbjct: 1701 IR 1706 Score = 78.5 bits (165), Expect(4) = 8e-70 Identities = 31/32 (96%), Positives = 31/32 (96%) Frame = +3 / +2 Query: 174 ERLGARECEELGFTGLALCSDCNALAEFVKDQ 269 ER GARECEELGFTGLALCSDCNALAEFVKDQ Sbjct: 272 ERFGARECEELGFTGLALCSDCNALAEFVKDQ 367 Score = 60.6 bits (126), Expect(4) = 8e-70 Identities = 25/33 (75%), Positives = 27/33 (81%) Frame = +3 / +3 Query: 504 TIRIDNWKREHIRQFLTEKVKPAKSET*LIVTS 602 T RIDNWKREHIRQFL EKVKP KS++* V S Sbjct: 2142 TCRIDNWKREHIRQFLKEKVKPVKSDS*ATVLS 2240 Score = 52.4 bits (108), Expect(4) = 8e-70 Identities = 19/21 (90%), Positives = 21/21 (100%) Frame = +3 / +1 Query: 270 ELVDDCRKCCTEDSDDSISKL 332 ELV+DCRKCCTEDSDDSISK+ Sbjct: 1099 ELVEDCRKCCTEDSDDSISKV 1161 Score = 112 bits (240), Expect(4) = 2e-49 Identities = 41/56 (73%), Positives = 48/56 (85%) Frame = -3 / -1 Query: 512 PYSLLLFTLVVKHYELWWRAISIPRFYIREVIFVLFEEANDFWIKHQLSHAYFNNC 345 PYSLLL V+KH ELWWRAI I F+IREV+F+LFEEA+DFWIKH+LSHA+ NNC Sbjct: 1706 PYSLLLVAFVIKHNELWWRAIDITSFHIREVVFILFEEAHDFWIKHKLSHAHLNNC 1539 Score = 58.8 bits (122), Expect(4) = 2e-49 Identities = 24/33 (72%), Positives = 28/33 (84%) Frame = -1 / -2 Query: 601 LVTINQVSDFAGFTFSVRNCRICSRFQLSILIV 503 L T+ Q+SDF GFTFS+RNCR+CS FQLSIL V Sbjct: 2239 LRTVAQLSDFTGFTFSLRNCRMCSLFQLSILQV 2141 Score = 46.4 bits (95), Expect(4) = 2e-49 Identities = 19/20 (95%), Positives = 19/20 (95%) Frame = -1 / -3 Query: 268 WSLTNSASALQSEQRARPVN 209 WSLTNSA ALQSEQRARPVN Sbjct: 366 WSLTNSARALQSEQRARPVN 307 Score = 45.5 bits (93), Expect(4) = 2e-49 Identities = 20/21 (95%), Positives = 21/21 (100%) Frame = -1 / -1 Query: 331 SLLIESSESSVQHLRQSSTNS 269 +LLIESSESSVQHLRQSSTNS Sbjct: 1160 TLLIESSESSVQHLRQSSTNS 1098 Score = 84.0 bits (177), Expect(4) = 1e-32 Identities = 39/58 (67%), Positives = 43/58 (74%) Frame = -2 / -3 Query: 513 SL*SPSVHPCRQAL*ALVESHKHTEILHKGSHLCPLRGSQRLLDKTPAFSCILQ*LRR 340 +L*SPS C QA *ALVESH+H E+ HKGS L PLRGS R LDKT AFSC Q*L + Sbjct: 1707 TL*SPSGRLCHQA**ALVESHRHNELPHKGSRLYPLRGSPRFLDKTQAFSCTPQ*LHQ 1534 Score = 45.5 bits (93), Expect(4) = 1e-32 Identities = 20/23 (86%), Positives = 20/23 (86%) Frame = -3 / -2 Query: 269 LVLDELGERVAVGAEGEAGEPQL 201 LVLDEL E VAVGAEGE GEPQL Sbjct: 367 LVLDELREGVAVGAEGETGEPQL 299 Score = 39.1 bits (79), Expect(4) = 1e-32 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = -2 / -3 Query: 594 RLIRSLTSPASPSL*EIAEYAHASSCRS 511 +L+ LTS ASPSL*E AE A +SSCRS Sbjct: 2232 QLLSCLTSLASPSL*ETAECAPSSSCRS 2149 Score = 37.3 bits (75), Expect(4) = 1e-32 Identities = 16/24 (66%), Positives = 17/24 (70%) Frame = -2 / -2 Query: 339 SIQAC**NHLNPPCNIYDSHPPTL 268 S+ C**NHLNP NIY S PP L Sbjct: 1168 SVIPC**NHLNPLYNIYGSPPPIL 1097 Score = 88.6 bits (187), Expect(3) = 4e-28 Identities = 43/61 (70%), Positives = 46/61 (75%) Frame = +2 / +2 Query: 329 ACILRRNY*SMHEKAGVLSRSRWLPRRGQR*LPLCRISVCLWLSTKAHNA*RQG*TEGDY 508 A IL NY* +HEKA VLSR+R LPRRG R LPLC S+CLWLSTKAH A* Q EGDY Sbjct: 1523 AHILWCNY*GVHEKACVLSRNRGLPRRG*RRLPLCGSSLCLWLSTKAHYA**QRRPEGDY 1702 Query: 509 K 511 K Sbjct: 1703 K 1705 Score = 43.7 bits (89), Expect(3) = 4e-28 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +2 / +2 Query: 509 KDRQLEA*AYSAISHREGEAGEVRDLIN 592 +DRQLE A+SA+S REGEA EVR L N Sbjct: 2147 QDRQLEEGAHSAVSQREGEASEVRQLSN 2230 Score = 38.6 bits (78), Expect(3) = 4e-28 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = +1 / +2 Query: 268 KSWWMTVVNVARRIQMILSA 327 ++WW T VNV +RIQMILSA Sbjct: 1097 QNWWRTAVNVVQRIQMILSA 1156 Score = 84.0 bits (177), Expect(3) = 1e-17 Identities = 42/66 (63%), Positives = 47/66 (71%) Frame = +1 / +1 Query: 316 ILSASLYTPAQLLKYA*ESWCFIQKSLASSKRTKMTSLM*NLGMLMALHQSS*CLTTRVN 495 + S ++ QLL+ A*ES CFIQKS ASSKR K TSLM L M MALHQSS CL T+ Sbjct: 1510 VFYCSSHSLVQLLRCA*ESLCFIQKSWASSKRIKTTSLMWKLVMSMALHQSSLCLMTKAT 1689 Query: 496 RRRL*G 513 RRRL*G Sbjct: 1690 RRRL*G 1707 Score = 27.6 bits (54), Expect(3) = 1e-17 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = +2 / +3 Query: 284 LS*MLHGGFR*FYQQ 328 L *ML+ GFR*FYQQ Sbjct: 1113 LP*MLYRGFR*FYQQ 1157 Score = 23.1 bits (44), Expect(3) = 1e-17 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +1 / +1 Query: 511 GSTTGSVSIFGNF 549 GSTTG S FG+F Sbjct: 2149 GSTTGRGSTFGSF 2187 Score = 45.1 bits (92), Expect(4) = 3e-16 Identities = 21/24 (87%), Positives = 21/24 (87%) Frame = -1 / -2 Query: 511 LIVSFCSPLSSSIMSFGGEP*AYR 440 LIVSF SPLSSSIMSFGGEP* R Sbjct: 1705 LIVSFWSPLSSSIMSFGGEP*T*R 1634 Score = 36.8 bits (74), Expect(4) = 3e-16 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = -1 / -2 Query: 382 *NTSFLMHTSIIAPEYTS 329 *NTSFLMHTSIIAPE S Sbjct: 1576 *NTSFLMHTSIIAPENVS 1523 Score = 34.1 bits (68), Expect(4) = 3e-16 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -3 / -3 Query: 329 LADRII*ILRATFTTVIHQ 273 LADRII*IL TFT V+HQ Sbjct: 1158 LADRII*ILCTTFTAVLHQ 1102 Score = 33.6 bits (67), Expect(4) = 3e-16 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 / -1 Query: 551 EKLPNMLTLPVVDPYSLLLF 492 EKLPN+L LPVVDP S + F Sbjct: 2189 EKLPNVLPLPVVDPASSIGF 2130
>LOC_Os01g66970:12001.t06055:unspliced-genomic zinc finger protein, putative, expressed| Length = 4416 Score = 56.5 bits (117), Expect = 2e-07 Identities = 23/30 (76%), Positives = 25/30 (83%) Frame = +3 / -3 Query: 513 IDNWKREHIRQFLTEKVKPAKSET*LIVTS 602 IDNWKREHIRQFL EKVKP KS++* V S Sbjct: 4414 IDNWKREHIRQFLKEKVKPVKSDS*ATVLS 4325 Score = 56.5 bits (117), Expect = 2e-07 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -1 / +3 Query: 601 LVTINQVSDFAGFTFSVRNCRICSRFQLSI 512 L T+ Q+SDF GFTFS+RNCR+CS FQLSI Sbjct: 4326 LRTVAQLSDFTGFTFSLRNCRMCSLFQLSI 4415 Score = 43.2 bits (88), Expect = 0.002 Identities = 19/27 (70%), Positives = 21/27 (77%) Frame = +2 / -2 Query: 512 DRQLEA*AYSAISHREGEAGEVRDLIN 592 DRQLE A+SA+S REGEA EVR L N Sbjct: 4415 DRQLEEGAHSAVSQREGEASEVRQLSN 4335 Score = 39.1 bits (79), Expect = 0.037 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = -2 / +1 Query: 594 RLIRSLTSPASPSL*EIAEYAHASSCRS 511 +L+ LTS ASPSL*E AE A +SSCRS Sbjct: 4333 QLLSCLTSLASPSL*ETAECAPSSSCRS 4416
>LOC_Os01g09252:12001.t06835:unspliced-genomic myosin heavy chain kinase B, putative, expressed| Length = 5007 Score = 34.1 bits (68), Expect = 1.2 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 / +2 Query: 434 YIREVIFVLFEEANDFWIKHQLSHAYFNNCAGVYKLADRI 315 Y + + + +N FW+ + L H YF C+ KL+ R+ Sbjct: 2492 YFLVLNITILQHSNSFWLLNHLGHFYFR*CSN*IKLSLRV 2611
>LOC_Os01g46280:12001.t04079:unspliced-genomic hypothetical protein| Length = 1407 Score = 33.6 bits (67), Expect = 1.7 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -1 / -1 Query: 628 RYMILQGEELVTINQVSDFAGFTFSVRNCRICSRFQLSILIVSFCSPL 485 +Y+ Q L INQV ++ +FS R+ CSR L ++I F + L Sbjct: 1185 KYLARQV*MLTQINQVLNYQYLSFSFRSIPFCSRLILKLVIEFFFNEL 1042
>LOC_Os04g04750:12004.t00359:unspliced-genomic peroxidase precursor, putative, expressed| Length = 3118 Score = 27.6 bits (54), Expect(2) = 4.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 / +3 Query: 348 LRRSIQAC**NHLNPPCNIYDSHPP 274 +RRS AC + PPC + S PP Sbjct: 2970 IRRSATACSRSGRTPPCGRWSSPPP 3044 Score = 25.8 bits (50), Expect(2) = 4.9 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 / +1 Query: 722 C*NSRGVHMLPSLGTDHR*PGFACKISQIHISIY 621 C*N R V +P * GFA K+S +++ Y Sbjct: 1741 C*NFRKVPKIPKFRFYRN*DGFAEKVSPHYVAEY 1842
>LOC_Os04g44780:12004.t04016:unspliced-genomic rare lipoprotein A like double-psi beta-barrel containing protein,| expressed Length = 4610 Score = 31.8 bits (63), Expect = 6.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 / +3 Query: 373 SFLMHTSIIAPEYTSLLIESSESSVQHLRQSSTNSWSLTNSASAL 239 SFL ++ + + + QHLR+S TN + L N++ AL Sbjct: 2859 SFLDQPEVLESHFPQVTGSHIPNQNQHLRRSETNGFQLINASDAL 2993
>LOC_Os02g37280:12002.t03366:unspliced-genomic metal ion binding protein, putative| Length = 580 Score = 31.8 bits (63), Expect = 6.0 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = -1 / -2 Query: 376 TSFLMHTSIIAPEYTSLLIESSESSVQHLRQSSTNSWSLTNSASALQS 233 +SFL ++++ + + L + SS++ +T +WSL + ASA +S Sbjct: 456 SSFLSSPTVMSVAWPTFLRSAVVSSMESTPSPTTTNWSLPSPASATES 313
>LOC_Os12g40530:12012.t03732:unspliced-genomic transposon protein, putative, Mutator sub-class, expressed| Length = 3595 Score = 31.3 bits (62), Expect = 8.2 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 / -3 Query: 41 SQAPNPWSVARWGEGDGS 94 + AP P ARWG GDGS Sbjct: 182 ASAPRPSGAARWGGGDGS 129
>LOC_Os04g58010:12004.t05264:unspliced-genomic B3 DNA binding domain containing protein| Length = 6711 Score = 31.3 bits (62), Expect = 8.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 / -3 Query: 444 TEILHKGSHLCPLRGSQRLLDKTPAFSCIL 355 +E +HK S P RGS R + P + CIL Sbjct: 2614 SEAMHKSSSTQPYRGSSRDQNSFPIYICIL 2525 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 260,234,463 Number of extensions: 3815716 Number of successful extensions: 13504 Number of sequences better than 10.0: 9 Length of query: 255 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 206 Effective length of database: 52,856,264 Effective search space: 10888390384 Effective search space used: 10888390384 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
