ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf148e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os07g0537200:Os07g0537200 30 1.4
2AK101142:Os09g0555600 29 1.9
3AB159444:Os09g0555600 29 1.9
4Os05g0440000:Os05g0440000 23 5.4
5AK070262:Os02g0282600 27 7.1
6Os02g0811400:Os02g0811400 27 9.2
7AK119586:Os06g0636600 27 9.2
8AK106007:Os09g0509000 27 9.2

>Os07g0537200:Os07g0537200 |
          Length = 678
 Score = 29.6 bits (65), Expect = 1.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 463 MFAPRSDIHSMQALTLQHAESSFHSENKLIAFGGLGLPDRTVASSSLC 320
           +FAPRS   S  AL       +  +   L A GG+G P  TV   +LC
Sbjct: 35  VFAPRSTYQSNLALLSAGLAKNASASPALFAAGGVGDPPDTVYGLALC 82



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>AK101142:Os09g0555600 |
          Length = 740

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   SRGMTPGPKERRSHGVRVVRFGPGFIPHDSIMVQVHGLG 125
           SR + P P+ R  +GVRV     G  P  S  V+V G+G
Sbjct: 24  SRRLVPSPRSRSGYGVRVAAAADG-APRPSDPVEVVGVG 61



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>AB159444:Os09g0555600 |
          Length = 740

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   SRGMTPGPKERRSHGVRVVRFGPGFIPHDSIMVQVHGLG 125
           SR + P P+ R  +GVRV     G  P  S  V+V G+G
Sbjct: 24  SRRLVPSPRSRSGYGVRVAAAADG-APRPSDPVEVVGVG 61



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>Os05g0440000:Os05g0440000 |
          Length = 327

 Score = 23.5 bits (49), Expect(2) = 5.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 358 GLPDRTVASSSLCFAASRAALELIYVDPSVMRAPHLEEILLYS---NHHQPWLAAGRPGS 188
           G+   T AS+ L      AA +     P+      ++  LLY+   NHHQP +A    G+
Sbjct: 133 GMAGSTAASAGLGEQPGVAAPD---EKPAAADGSTIDLALLYAKFLNHHQPTMAEQGGGA 189

Query: 187 SV 182
           +V
Sbjct: 190 AV 191



 Score = 22.7 bits (47), Expect(2) = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 164 DRGTGGAHKNTGDAESVNLNHDGVMGNEAWSETHHAHAM 48
           DR T  A      A +     DG++G    +E H A AM
Sbjct: 204 DRTTSPAAAQPAAAAAYGPGQDGLVGEPISTEEHGAAAM 242



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>AK070262:Os02g0282600 |
          Length = 190

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 192 GRLFCFRPHGQRHRWSSQEHRRCR 121
           GR    RP  +RHRW    HRRCR
Sbjct: 3   GRWDSSRPARRRHRWG---HRRCR 23



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>Os02g0811400:Os02g0811400 |
          Length = 384

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 313 ASRAALELIYVDPSVMRAPHLEEILLYSNHH 221
           A++  LEL  V PS+   P L++ L +S++H
Sbjct: 179 AAKRGLELAVVVPSMTMGPMLQQTLNFSSNH 209



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>AK119586:Os06g0636600 |
          Length = 398

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 215 LASCRQARVVCFVSDHMDRGTGGAHKNTGDAESVN 111
           +A+C++  V C ++++M +GT   + N  D  S++
Sbjct: 165 IAACKKPPVYCIITEYMSQGTLRMYLNKKDPYSLS 199



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>AK106007:Os09g0509000 |
          Length = 396

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 346 RTVASSSLCFAASRAALELIYVDPSVMRAPHLEEILLYSNHHQPWLAAGRP 194
           R  A+++ CFA   A   L    P+    P  E ILL     + WL    P
Sbjct: 45  RAAAAAARCFATQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVVEP 95


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 17,241,636
Number of extensions: 394842
Number of successful extensions: 1101
Number of sequences better than 10.0: 8
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 9
Length of query: 188
Length of database: 15,399,855
Length adjustment: 95
Effective length of query: 93
Effective length of database: 11,595,960
Effective search space: 1078424280
Effective search space used: 1078424280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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