ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf148e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P47656:RS9_MYCGE 30S ribosomal protein S9 - Mycoplasma genitalium 30 4.5
2Q2T0M6:PDXH_BURTA Pyridoxamine 5'-phosphate oxidase - Burkholder... 30 4.5
3Q63WN7:PDXH_BURPS Pyridoxamine 5'-phosphate oxidase - Burkholder... 30 7.6
4Q3JVD0:PDXH_BURP1 Pyridoxamine 5'-phosphate oxidase - Burkholder... 30 7.6
5Q62M91:PDXH_BURMA Pyridoxamine 5'-phosphate oxidase - Burkholder... 30 7.6
6P03517:VGLM_PTPV Envelope glycoprotein precursor - Punta toro ph... 29 10.0

>P47656:RS9_MYCGE 30S ribosomal protein S9 - Mycoplasma genitalium|
          Length = 132
 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 274 MGRHKSTPEQLYLQQSKEKS*LQFDQVVQDHQKLSAYFQNE 396
           +GR KS+  ++YL QSK+K      ++  +H+  S YF N+
Sbjct: 9   LGRRKSSTAKVYLYQSKDKG-----KITINHRNPSDYFPNK 44



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>Q2T0M6:PDXH_BURTA Pyridoxamine 5'-phosphate oxidase - Burkholderia thailandensis|
           (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
          Length = 214

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 237 RRISSRCGARMTDGST*INSRAALLAAKQREELATVRSGSPRPP 368
           R + SR GA  ++ S  I SRA LL A+++E  A      PRPP
Sbjct: 127 RPLGSRIGAWASEQSAVIESRA-LLEAREKEISARFGENPPRPP 169



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>Q63WN7:PDXH_BURPS Pyridoxamine 5'-phosphate oxidase - Burkholderia pseudomallei|
           (Pseudomonas pseudomallei)
          Length = 214

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 237 RRISSRCGARMTDGST*INSRAALLAAKQREELATVRSGSPRPP 368
           R + SR GA  ++ S  I SRA LL A+++E  A      PRPP
Sbjct: 127 RPLGSRIGAWASEQSAVIESRA-LLEAREKEIGARFGENPPRPP 169



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>Q3JVD0:PDXH_BURP1 Pyridoxamine 5'-phosphate oxidase - Burkholderia pseudomallei|
           (strain 1710b)
          Length = 214

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 237 RRISSRCGARMTDGST*INSRAALLAAKQREELATVRSGSPRPP 368
           R + SR GA  ++ S  I SRA LL A+++E  A      PRPP
Sbjct: 127 RPLGSRIGAWASEQSAVIESRA-LLEAREKEIGARFGENPPRPP 169



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>Q62M91:PDXH_BURMA Pyridoxamine 5'-phosphate oxidase - Burkholderia mallei|
           (Pseudomonas mallei)
          Length = 214

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 237 RRISSRCGARMTDGST*INSRAALLAAKQREELATVRSGSPRPP 368
           R + SR GA  ++ S  I SRA LL A+++E  A      PRPP
Sbjct: 127 RPLGSRIGAWASEQSAVIESRA-LLEAREKEIGARFGENPPRPP 169



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>P03517:VGLM_PTPV Envelope glycoprotein precursor - Punta toro phlebovirus|
          Length = 1313

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 195 QGRLFCFRPHGQRHRWSSQEHRRCRVREPE 106
           +G ++ +  H +RH +  QE +RCRV + +
Sbjct: 41  EGLVYYWETHSKRHDYKKQESQRCRVGDSD 70


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 100,429,747
Number of extensions: 2153024
Number of successful extensions: 5369
Number of sequences better than 10.0: 6
Number of HSP's gapped: 5369
Number of HSP's successfully gapped: 6
Length of query: 188
Length of database: 100,686,439
Length adjustment: 107
Effective length of query: 81
Effective length of database: 71,336,874
Effective search space: 5778286794
Effective search space used: 5778286794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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