ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf143f08 |
|---|---|
| Clone Library Name | barley_pub |
>Q9DDD7:SX19B_DANRE Transcription factor Sox-19b - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 292 Score = 32.3 bits (72), Expect = 2.5 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 23 LLPNQRPTVETAHGVLQAPGCSPPRRGAGSHCHVRRRAGPP 145 ++ ++ T H + +PG SPP G G+ HV + A PP Sbjct: 4 MMEHELKTAGPPHTLQHSPGMSPPGSGVGNAHHVSKTACPP 44
>Q5H2R3:SYE_XANOR Glutamyl-tRNA synthetase - Xanthomonas oryzae pv. oryzae| Length = 467 Score = 31.2 bits (69), Expect = 5.7 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -1 Query: 192 CRTGSAPSRCGSAYSSGGPARRRTWQWLPAPRRGGE 85 CRT APS G Y G AR + WL A RRGG+ Sbjct: 3 CRTRFAPSPTG--YLHIGGARTALYCWLEARRRGGQ 36
>Q2P5M8:SYE_XANOM Glutamyl-tRNA synthetase - Xanthomonas oryzae pv. oryzae (strain| MAFF 311018) Length = 467 Score = 31.2 bits (69), Expect = 5.7 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -1 Query: 192 CRTGSAPSRCGSAYSSGGPARRRTWQWLPAPRRGGE 85 CRT APS G Y G AR + WL A RRGG+ Sbjct: 3 CRTRFAPSPTG--YLHIGGARTALYCWLEARRRGGQ 36
>Q9UKR0:KLK12_HUMAN Kallikrein-12 precursor - Homo sapiens (Human)| Length = 248 Score = 30.8 bits (68), Expect = 7.4 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Frame = +3 Query: 258 LRQGTHVSFTVCSWTGRVKVQDAVVTEFHLGYDGGAW---YQVSTDQSRMPIRVSITPHG 428 +R G H S + WT +++ VT H GY G + + + + R+P+RV+ + Sbjct: 70 VRLGEH-SLSQLDWTEQIRHSGFSVT--HPGYLGASTSHEHDLRLLRLRLPVRVTSSVQP 126 Query: 429 HPLKDHCPTAG 461 PL + C TAG Sbjct: 127 LPLPNDCATAG 137
>Q6CAB8:GPI10_YARLI GPI mannosyltransferase 3 - Yarrowia lipolytica (Candida| lipolytica) Length = 510 Score = 30.8 bits (68), Expect = 7.4 Identities = 20/71 (28%), Positives = 33/71 (46%) Frame = +2 Query: 629 AAWRILVVLHAAASWFILSRRVGFAVQLGVAVVDVWLEMFHGRAMNCMSSALYPSLVWGV 808 A W + V L +A +WF L+R + ++ + V + F+G+ +N L +L G Sbjct: 126 APWALFVSLLSAFNWFFLTRTFSNSAEMVLTAVALNYWSFNGKEVN--FKRLSVALFIGA 183 Query: 809 CVCVCSSLNQI 841 CV N I Sbjct: 184 ISCVLRPTNAI 194
>Q9STJ9:SAP10_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein| 10 - Arabidopsis thaliana (Mouse-ear cress) Length = 130 Score = 30.4 bits (67), Expect = 9.7 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -3 Query: 541 KTILISSTPWHLPPGTECSKHLPPLVQPAVGQWSFRGWPCGVMETRMGM 395 K++L S P TE S+ PP PAV + + CG+ + ++GM Sbjct: 32 KSVLQHSPALRFEPETEQSQCCPPTNSPAVEEEPVKKRRCGICKRKVGM 80
>P27957:POLG_HCVTH Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus| (isolate TH) (HCV) Length = 321 Score = 30.4 bits (67), Expect = 9.7 Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +2 Query: 29 PNQRPTVETAHGVLQAPGCSP-PRRGAGSHCHVRRRAGPPEL*AEPQRDGAEPVRQGPLP 205 PN E A +L APGC P R G S C V A P + RDG P Q L Sbjct: 92 PNSSIVYEAADAILHAPGCVPCVREGNASRCWV---AMTPTV---ATRDGRLPTTQ--LR 143 Query: 206 RH 211 RH Sbjct: 144 RH 145
>P27955:POLG_HCVH7 Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus| (isolate HCT27) (HCV) Length = 309 Score = 30.4 bits (67), Expect = 9.7 Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Frame = +2 Query: 29 PNQRPTVETAHGVLQAPGCSP-PRRGAGSHCHVRRRAGPPEL*AEPQRDGAEPVRQGPLP 205 PN ETA +L +PGC P R G S C V P RDG P Q L Sbjct: 80 PNSSIVYETADTILHSPGCVPCVREGNASKCWV------PVAPTVATRDGNLPATQ--LR 131 Query: 206 RH 211 RH Sbjct: 132 RH 133
>P19832:HBA_TRIOC Hemoglobin subunit alpha-A - Trigonoceps occipitalis (White-headed| vulture) Length = 141 Score = 30.4 bits (67), Expect = 9.7 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Frame = -2 Query: 401 GHARLVGAHLVPRPAVV--PEVELRHHGVLHLHASSPRAHGERNVGALAE------QVAG 246 GHA GA + R + P H LH ++ +AHG++ VGAL E +AG Sbjct: 19 GHAEDYGAETLERMFITYPPTKTYFPHFDLHHGSAQIKAHGKKVVGALIEAVNHIDDIAG 78 Query: 245 AVEELA 228 A+ +L+ Sbjct: 79 ALSKLS 84
>P07417:HBA_AEGMO Hemoglobin subunit alpha-A - Aegypius monachus (Black vulture)| Length = 142 Score = 30.4 bits (67), Expect = 9.7 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Frame = -2 Query: 401 GHARLVGAHLVPRPAVV--PEVELRHHGVLHLHASSPRAHGERNVGALAE------QVAG 246 GHA GA + R + P H LH ++ +AHG++ VGAL E +AG Sbjct: 20 GHAEDYGAETLERMFITYPPTKTYFPHFDLHHGSAQIKAHGKKVVGALIEAVNHIDDIAG 79 Query: 245 AVEELA 228 A+ +L+ Sbjct: 80 ALSKLS 85
>Q61091:FZD8_MOUSE Frizzled-8 precursor - Mus musculus (Mouse)| Length = 685 Score = 30.4 bits (67), Expect = 9.7 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Frame = +2 Query: 11 LTSPLLPNQRPTVETAHGVLQAPGCSPPRRGAGSHCHVRRRAGPPEL--*AEPQRDGAEP 184 L P P ++P + H + PG PP RG S A PP A P GA P Sbjct: 167 LPPPPPPGEQPPSGSGHS--RPPGARPPHRGGSSRGSGDAAAAPPSRGGKARPPGGGAAP 224 Query: 185 VRQG 196 G Sbjct: 225 CEPG 228 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 125,649,751 Number of extensions: 2619021 Number of successful extensions: 7960 Number of sequences better than 10.0: 11 Number of HSP's gapped: 7956 Number of HSP's successfully gapped: 11 Length of query: 291 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 179 Effective length of database: 69,965,399 Effective search space: 12523806421 Effective search space used: 12523806421 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
