ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf143f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT831490.1| Oryza sativa (indica cultivar-group) cDNA clone:... 46 0.21
2emb|CT831257.1| Oryza sativa (indica cultivar-group) cDNA clone:... 46 0.21
3emb|CT831256.1| Oryza sativa (indica cultivar-group) cDNA clone:... 46 0.21
4ref|NM_001073604.1| Oryza sativa (japonica cultivar-group) Os12g... 46 0.21
5ref|NM_001073603.1| Oryza sativa (japonica cultivar-group) Os12g... 46 0.21
6ref|NM_001052928.1| Oryza sativa (japonica cultivar-group) Os02g... 46 0.21
7tpe|BN000555.1| TPA_inf: Oryza sativa (japonica cultivar-group) ... 46 0.21
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.21
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.21
10dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.21
11dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.21
12dbj|AK107485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.21
13dbj|AK104670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.21
14dbj|AK099886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.21
15dbj|AK068642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.21
16emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.21
17emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on ch... 44 0.83
18gb|DQ245184.1| Zea mays clone 13591 mRNA sequence 42 3.3
19gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome 42 3.3
20gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome 42 3.3
21gb|DQ398049.1| Mycobacteriophage Pipefish, complete genome 42 3.3
22gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 3.3
23gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 3.3
24gb|BT016251.1| Zea mays clone Contig84 mRNA sequence 42 3.3
25gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 3.3
26gb|BC114062.1| Bos taurus cDNA clone MGC:137539 IMAGE:8161659, c... 42 3.3
27gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 3.3
28gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Canc... 42 3.3
29gb|U07832.1|PAU07832 Pseudomonas aeruginosa helicase I (helA) ge... 42 3.3
30emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 i... 42 3.3
31gb|AY104505.1| Zea mays PCO140706 mRNA sequence 42 3.3
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 3.3
33gb|AC167817.4| Mus musculus BAC clone RP23-146N9 from chromosome... 42 3.3
34ref|XM_719837.1| Plasmodium yoelii yoelii str. 17XNL ubiquitin c... 42 3.3
35gb|AC118547.41| Mus musculus strain C57BL/6J clone rp23-3g4 map ... 42 3.3
36dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 3.3
37ref|NM_174757.2| Bos taurus aspartate beta-hydroxylase (ASPH), m... 42 3.3

>emb|CT831490.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA013K10, full
           insert sequence
          Length = 807
 Score = 46.1 bits (23), Expect = 0.21
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377
           |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 300 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 342



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>emb|CT831257.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA005C22, full
           insert sequence
          Length = 1155

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 87  ctcctcctcgccgtggcgctggc 109



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>emb|CT831256.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109J22, full
           insert sequence
          Length = 1300

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 129 ctcctcctcgccgtggcgctggc 151



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>ref|NM_001073604.1| Oryza sativa (japonica cultivar-group) Os12g0569100 (Os12g0569100)
           mRNA, complete cds
          Length = 800

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377
           |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 495 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 453



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>ref|NM_001073603.1| Oryza sativa (japonica cultivar-group) Os12g0569200 (Os12g0569200)
           mRNA, complete cds
          Length = 495

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377
           |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 276 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 318



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>ref|NM_001052928.1| Oryza sativa (japonica cultivar-group) Os02g0236800 (Os02g0236800)
           mRNA, complete cds
          Length = 1228

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 124 ctcctcctcgccgtggcgctggc 146



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>tpe|BN000555.1| TPA_inf: Oryza sativa (japonica cultivar-group) prx26 gene for
           class III peroxidase 26 precursor, exons 1-3
          Length = 1175

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 46  ctcctcctcgccgtggcgctggc 68



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 335      ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377
                |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 23453990 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 23454032



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 87      ctcctcctcgccgtggcgctggc 109
               |||||||||||||||||||||||
Sbjct: 7760216 ctcctcctcgccgtggcgctggc 7760238



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>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OSJNBb0006L10
          Length = 171115

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 579 ctcctcctcgccgtggcgctggc 601



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>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_A12
          Length = 149089

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 87    ctcctcctcgccgtggcgctggc 109
             |||||||||||||||||||||||
Sbjct: 96481 ctcctcctcgccgtggcgctggc 96503



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>dbj|AK107485.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C08, full
           insert sequence
          Length = 800

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377
           |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 306 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 348



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>dbj|AK104670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A04, full
           insert sequence
          Length = 1184

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 97  ctcctcctcgccgtggcgctggc 119



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>dbj|AK099886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B18, full
           insert sequence
          Length = 1230

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 125 ctcctcctcgccgtggcgctggc 147



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>dbj|AK068642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D18, full
           insert sequence
          Length = 1171

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  ctcctcctcgccgtggcgctggc 109
           |||||||||||||||||||||||
Sbjct: 98  ctcctcctcgccgtggcgctggc 120



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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 335   ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377
             |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 48169 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 48127



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>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a
              ribosomal protein S6 (Rps6) pseudogene, a novel gene, the
              gene for a novel immunoglobulin domain containing protein
              and two CpG islands, complete sequence
          Length = 219893

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 255    ctgctccgccagggcacccacgtttcgttc 284
              |||||| |||||||||||||||||| ||||
Sbjct: 120600 ctgctctgccagggcacccacgtttggttc 120629



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>gb|DQ245184.1| Zea mays clone 13591 mRNA sequence
          Length = 946

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 gtgacggtgcagaacctgtgc 188
           |||||||||||||||||||||
Sbjct: 197 gtgacggtgcagaacctgtgc 217



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>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome
          Length = 6537648

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 514     acggcgtcgacgagatcaaga 534
               |||||||||||||||||||||
Sbjct: 6236318 acggcgtcgacgagatcaaga 6236338



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>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome
          Length = 6264404

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 514     acggcgtcgacgagatcaaga 534
               |||||||||||||||||||||
Sbjct: 5963104 acggcgtcgacgagatcaaga 5963124



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>gb|DQ398049.1| Mycobacteriophage Pipefish, complete genome
          Length = 69059

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 318   caggacgccgtggtgacggagttcc 342
             ||||||| |||||||||||||||||
Sbjct: 39711 caggacgacgtggtgacggagttcc 39735



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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    ccctcggcatcgagccgctgg 222
              |||||||||||||||||||||
Sbjct: 189142 ccctcggcatcgagccgctgg 189122



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 514     acggcgtcgacgagatcaaga 534
               |||||||||||||||||||||
Sbjct: 6187949 acggcgtcgacgagatcaaga 6187969



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>gb|BT016251.1| Zea mays clone Contig84 mRNA sequence
          Length = 943

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 gtgacggtgcagaacctgtgc 188
           |||||||||||||||||||||
Sbjct: 187 gtgacggtgcagaacctgtgc 207



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>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete
            sequence
          Length = 190328

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 218  gctggccaacagcaagctcct 238
            |||||||||||||||||||||
Sbjct: 1826 gctggccaacagcaagctcct 1806



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>gb|BC114062.1| Bos taurus cDNA clone MGC:137539 IMAGE:8161659, complete cds
          Length = 1626

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 457 ccggctgcaccagcggcggca 477
           |||||||||||||||||||||
Sbjct: 262 ccggctgcaccagcggcggca 282



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 514     acggcgtcgacgagatcaaga 534
               |||||||||||||||||||||
Sbjct: 6852731 acggcgtcgacgagatcaaga 6852751



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>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226538

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    gctggccaacagcaagctcct 238
              |||||||||||||||||||||
Sbjct: 114179 gctggccaacagcaagctcct 114199



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>gb|U07832.1|PAU07832 Pseudomonas aeruginosa helicase I (helA) gene, partial cds
          Length = 2122

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 514  acggcgtcgacgagatcaaga 534
            |||||||||||||||||||||
Sbjct: 1016 acggcgtcgacgagatcaaga 1036



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>emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 in linkage group 2,
             complete sequence
          Length = 148854

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 587   gagtagctaggttgctgctgg 607
             |||||||||||||||||||||
Sbjct: 18883 gagtagctaggttgctgctgg 18903



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>gb|AY104505.1| Zea mays PCO140706 mRNA sequence
          Length = 933

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 gtgacggtgcagaacctgtgc 188
           |||||||||||||||||||||
Sbjct: 185 gtgacggtgcagaacctgtgc 205



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 94      tcgccgtggcgctggcagcca 114
               |||||||||||||||||||||
Sbjct: 3851261 tcgccgtggcgctggcagcca 3851281



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>gb|AC167817.4| Mus musculus BAC clone RP23-146N9 from chromosome 17, complete sequence
          Length = 213670

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    cctcacctctccactcctacc 30
             |||||||||||||||||||||
Sbjct: 63915 cctcacctctccactcctacc 63935



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>ref|XM_719837.1| Plasmodium yoelii yoelii str. 17XNL ubiquitin carboxyl-terminal
           hydrolase family 2 (PY04608) partial mRNA
          Length = 3519

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 829 tttaaatcagatttaaaattt 849
           |||||||||||||||||||||
Sbjct: 413 tttaaatcagatttaaaattt 393



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>gb|AC118547.41| Mus musculus strain C57BL/6J clone rp23-3g4 map 17, complete sequence
          Length = 234061

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    cctcacctctccactcctacc 30
             |||||||||||||||||||||
Sbjct: 99887 cctcacctctccactcctacc 99867



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>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete
              sequence
          Length = 142000

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 67     tctccaagcccctggctgctctcct 91
              ||||||||||||||||| |||||||
Sbjct: 117436 tctccaagcccctggcttctctcct 117412



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>ref|NM_174757.2| Bos taurus aspartate beta-hydroxylase (ASPH), mRNA
 gb|M91213.1|BOVASBHY Bos taurus aspartyl (asparaginyl) beta hydroxylase mRNA, complete
           cds
          Length = 2739

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 457 ccggctgcaccagcggcggca 477
           |||||||||||||||||||||
Sbjct: 256 ccggctgcaccagcggcggca 276


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 123,173,693
Number of extensions: 6471611
Number of successful extensions: 129977
Number of sequences better than 10.0: 37
Number of HSP's gapped: 129977
Number of HSP's successfully gapped: 37
Length of query: 873
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 851
Effective length of database: 18,508,616,841
Effective search space: 15750832931691
Effective search space used: 15750832931691
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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