| Clone Name | FLbaf143f08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT831490.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA013K10, full insert sequence Length = 807 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377 |||||||||| |||| ||||||||| ||||||||||||||| Sbjct: 300 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 342
>emb|CT831257.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA005C22, full insert sequence Length = 1155 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 87 ctcctcctcgccgtggcgctggc 109
>emb|CT831256.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109J22, full insert sequence Length = 1300 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 129 ctcctcctcgccgtggcgctggc 151
>ref|NM_001073604.1| Oryza sativa (japonica cultivar-group) Os12g0569100 (Os12g0569100) mRNA, complete cds Length = 800 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Minus Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377 |||||||||| |||| ||||||||| ||||||||||||||| Sbjct: 495 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 453
>ref|NM_001073603.1| Oryza sativa (japonica cultivar-group) Os12g0569200 (Os12g0569200) mRNA, complete cds Length = 495 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377 |||||||||| |||| ||||||||| ||||||||||||||| Sbjct: 276 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 318
>ref|NM_001052928.1| Oryza sativa (japonica cultivar-group) Os02g0236800 (Os02g0236800) mRNA, complete cds Length = 1228 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 124 ctcctcctcgccgtggcgctggc 146
>tpe|BN000555.1| TPA_inf: Oryza sativa (japonica cultivar-group) prx26 gene for class III peroxidase 26 precursor, exons 1-3 Length = 1175 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 46 ctcctcctcgccgtggcgctggc 68
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377 |||||||||| |||| ||||||||| ||||||||||||||| Sbjct: 23453990 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 23454032
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 7760216 ctcctcctcgccgtggcgctggc 7760238
>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0006L10 Length = 171115 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 579 ctcctcctcgccgtggcgctggc 601
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 96481 ctcctcctcgccgtggcgctggc 96503
>dbj|AK107485.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C08, full insert sequence Length = 800 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377 |||||||||| |||| ||||||||| ||||||||||||||| Sbjct: 306 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 348
>dbj|AK104670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A04, full insert sequence Length = 1184 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 97 ctcctcctcgccgtggcgctggc 119
>dbj|AK099886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B18, full insert sequence Length = 1230 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 125 ctcctcctcgccgtggcgctggc 147
>dbj|AK068642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D18, full insert sequence Length = 1171 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 87 ctcctcctcgccgtggcgctggc 109 ||||||||||||||||||||||| Sbjct: 98 ctcctcctcgccgtggcgctggc 120
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Minus Query: 335 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 377 |||||||||| |||| ||||||||| ||||||||||||||| Sbjct: 48169 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 48127
>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a ribosomal protein S6 (Rps6) pseudogene, a novel gene, the gene for a novel immunoglobulin domain containing protein and two CpG islands, complete sequence Length = 219893 Score = 44.1 bits (22), Expect = 0.83 Identities = 28/30 (93%) Strand = Plus / Plus Query: 255 ctgctccgccagggcacccacgtttcgttc 284 |||||| |||||||||||||||||| |||| Sbjct: 120600 ctgctctgccagggcacccacgtttggttc 120629
>gb|DQ245184.1| Zea mays clone 13591 mRNA sequence Length = 946 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 gtgacggtgcagaacctgtgc 188 ||||||||||||||||||||| Sbjct: 197 gtgacggtgcagaacctgtgc 217
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 acggcgtcgacgagatcaaga 534 ||||||||||||||||||||| Sbjct: 6236318 acggcgtcgacgagatcaaga 6236338
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 acggcgtcgacgagatcaaga 534 ||||||||||||||||||||| Sbjct: 5963104 acggcgtcgacgagatcaaga 5963124
>gb|DQ398049.1| Mycobacteriophage Pipefish, complete genome Length = 69059 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 caggacgccgtggtgacggagttcc 342 ||||||| ||||||||||||||||| Sbjct: 39711 caggacgacgtggtgacggagttcc 39735
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 ccctcggcatcgagccgctgg 222 ||||||||||||||||||||| Sbjct: 189142 ccctcggcatcgagccgctgg 189122
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 acggcgtcgacgagatcaaga 534 ||||||||||||||||||||| Sbjct: 6187949 acggcgtcgacgagatcaaga 6187969
>gb|BT016251.1| Zea mays clone Contig84 mRNA sequence Length = 943 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 gtgacggtgcagaacctgtgc 188 ||||||||||||||||||||| Sbjct: 187 gtgacggtgcagaacctgtgc 207
>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete sequence Length = 190328 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 gctggccaacagcaagctcct 238 ||||||||||||||||||||| Sbjct: 1826 gctggccaacagcaagctcct 1806
>gb|BC114062.1| Bos taurus cDNA clone MGC:137539 IMAGE:8161659, complete cds Length = 1626 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 ccggctgcaccagcggcggca 477 ||||||||||||||||||||| Sbjct: 262 ccggctgcaccagcggcggca 282
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 acggcgtcgacgagatcaaga 534 ||||||||||||||||||||| Sbjct: 6852731 acggcgtcgacgagatcaaga 6852751
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226538 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 gctggccaacagcaagctcct 238 ||||||||||||||||||||| Sbjct: 114179 gctggccaacagcaagctcct 114199
>gb|U07832.1|PAU07832 Pseudomonas aeruginosa helicase I (helA) gene, partial cds Length = 2122 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 acggcgtcgacgagatcaaga 534 ||||||||||||||||||||| Sbjct: 1016 acggcgtcgacgagatcaaga 1036
>emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 in linkage group 2, complete sequence Length = 148854 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 587 gagtagctaggttgctgctgg 607 ||||||||||||||||||||| Sbjct: 18883 gagtagctaggttgctgctgg 18903
>gb|AY104505.1| Zea mays PCO140706 mRNA sequence Length = 933 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 gtgacggtgcagaacctgtgc 188 ||||||||||||||||||||| Sbjct: 185 gtgacggtgcagaacctgtgc 205
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tcgccgtggcgctggcagcca 114 ||||||||||||||||||||| Sbjct: 3851261 tcgccgtggcgctggcagcca 3851281
>gb|AC167817.4| Mus musculus BAC clone RP23-146N9 from chromosome 17, complete sequence Length = 213670 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 cctcacctctccactcctacc 30 ||||||||||||||||||||| Sbjct: 63915 cctcacctctccactcctacc 63935
>ref|XM_719837.1| Plasmodium yoelii yoelii str. 17XNL ubiquitin carboxyl-terminal hydrolase family 2 (PY04608) partial mRNA Length = 3519 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 829 tttaaatcagatttaaaattt 849 ||||||||||||||||||||| Sbjct: 413 tttaaatcagatttaaaattt 393
>gb|AC118547.41| Mus musculus strain C57BL/6J clone rp23-3g4 map 17, complete sequence Length = 234061 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 cctcacctctccactcctacc 30 ||||||||||||||||||||| Sbjct: 99887 cctcacctctccactcctacc 99867
>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete sequence Length = 142000 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 tctccaagcccctggctgctctcct 91 ||||||||||||||||| ||||||| Sbjct: 117436 tctccaagcccctggcttctctcct 117412
>ref|NM_174757.2| Bos taurus aspartate beta-hydroxylase (ASPH), mRNA gb|M91213.1|BOVASBHY Bos taurus aspartyl (asparaginyl) beta hydroxylase mRNA, complete cds Length = 2739 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 ccggctgcaccagcggcggca 477 ||||||||||||||||||||| Sbjct: 256 ccggctgcaccagcggcggca 276 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 123,173,693 Number of extensions: 6471611 Number of successful extensions: 129977 Number of sequences better than 10.0: 37 Number of HSP's gapped: 129977 Number of HSP's successfully gapped: 37 Length of query: 873 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 851 Effective length of database: 18,508,616,841 Effective search space: 15750832931691 Effective search space used: 15750832931691 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)