| Clone Name | FLbaf140e21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000453.1| Alkalilimnicola ehrlichei MLHE-1, complete genome Length = 3275944 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 354 gtcaggaaggtcacgccgccggcaga 379 ||||||||||| |||||||||||||| Sbjct: 1370885 gtcaggaaggtgacgccgccggcaga 1370910
>gb|AC122562.8| Mus musculus chromosome 5, clone RP24-103L16, complete sequence Length = 172210 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 194 tggttataatttgattgattgattga 219 ||||| |||||||||||||||||||| Sbjct: 46664 tggttttaatttgattgattgattga 46689
>emb|AL646103.3| Human DNA sequence from clone RP11-165L6 on chromosome 13, complete sequence Length = 56712 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 188 gtttattggttataatttgattgatt 213 |||||||||||||| ||||||||||| Sbjct: 15883 gtttattggttatattttgattgatt 15858
>emb|AL356288.15| Human DNA sequence from clone RP11-6E3 on chromosome 1, complete sequence Length = 184469 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1023 ttgtaatagacaaaattcaaga 1044 |||||||||||||||||||||| Sbjct: 60404 ttgtaatagacaaaattcaaga 60425
>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the Chd3 gene for chromodomain helicase DNA binding protein 3, five novel genes, the 3' end of the gene for a novel protein similar to dynein and four CpG islands, complete sequence Length = 165212 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 194 tggttataatttgattgattgattga 219 ||||| |||||||||||||||||||| Sbjct: 107634 tggttttaatttgattgattgattga 107659
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 tataatttgattgattgattga 219 |||||||||||||||||||||| Sbjct: 28288 tataatttgattgattgattga 28267
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 tataatttgattgattgattga 219 |||||||||||||||||||||| Sbjct: 7196 tataatttgattgattgattga 7175
>emb|BX470235.7| Zebrafish DNA sequence from clone DKEY-22N8 in linkage group 1, complete sequence Length = 111247 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tataatttgattgattgattga 219 |||||||||||||||||||||| Sbjct: 71717 tataatttgattgattgattga 71738
>gb|AY557343.2| Penicillium nordicum alkaline serine protease (asp) and ochratoxin A non-ribosomal peptide synthetase (nps) genes, complete cds; and ochratoxin A polyketide synthase gene, partial cds Length = 10258 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1404 cttgcttcatctcttcacatggcctg 1429 ||||||||||||||||| |||||||| Sbjct: 10045 cttgcttcatctcttcaaatggcctg 10020
>emb|AM167904.1| Bordetella avium 197N complete genome Length = 3732255 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 622 agtggtcgatcaacaaggatg 642 ||||||||||||||||||||| Sbjct: 2278577 agtggtcgatcaacaaggatg 2278597
>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197962 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 195976 ataatttgattgattgattga 195956
>ref|NM_012952.1| Rattus norvegicus fibroblast growth factor 9 (Fgf9), mRNA Length = 1065 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 643 ttcacaataaatgaagcaagtggcc 667 |||||||||||| |||||||||||| Sbjct: 1013 ttcacaataaatcaagcaagtggcc 989
>gb|BC078699.1| Rattus norvegicus fibroblast growth factor 9, mRNA (cDNA clone IMAGE:7124006) Length = 1963 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 643 ttcacaataaatgaagcaagtggcc 667 |||||||||||| |||||||||||| Sbjct: 1617 ttcacaataaatcaagcaagtggcc 1593
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete sequence Length = 138345 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 gctggtcggtgggtggcgagg 33 ||||||||||||||||||||| Sbjct: 131598 gctggtcggtgggtggcgagg 131578
>gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosome 19, complete sequence Length = 162238 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 140946 ataatttgattgattgattga 140926
>gb|AC123786.6| Homo sapiens chromosome 18, clone RP11-63N3, complete sequence Length = 136551 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1312 gtctgcttttgtatcctgtttcctg 1336 ||||||||||| ||||||||||||| Sbjct: 134498 gtctgcttttgaatcctgtttcctg 134474
>gb|AC076971.25| Homo sapiens 3 BAC RP11-525O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75323 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 954 atgactatgaaacaagaaagt 974 ||||||||||||||||||||| Sbjct: 73005 atgactatgaaacaagaaagt 73025
>gb|AC166247.3| Mus musculus BAC RP23-426E9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191393 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 113120 ataatttgattgattgattga 113100
>gb|AC124254.5| Homo sapiens chromosome 18, clone RP11-176N18, complete sequence Length = 208155 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1312 gtctgcttttgtatcctgtttcctg 1336 ||||||||||| ||||||||||||| Sbjct: 166030 gtctgcttttgaatcctgtttcctg 166054
>dbj|AK028655.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732427L16 product:alpha glucosidase 2, alpha neutral subunit, full insert sequence Length = 3799 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 tgaaggcaatggagccccagc 421 ||||||||||||||||||||| Sbjct: 616 tgaaggcaatggagccccagc 636
>emb|CR932377.17| Zebrafish DNA sequence from clone DKEY-238H15 in linkage group 13, complete sequence Length = 100320 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 taatttgattgattgattgac 220 ||||||||||||||||||||| Sbjct: 79142 taatttgattgattgattgac 79122
>gb|AC105752.2| Homo sapiens chromosome 3 clone RP11-45K8, complete sequence Length = 142525 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 tgcatgcatagttcagtggtc 628 ||||||||||||||||||||| Sbjct: 30875 tgcatgcatagttcagtggtc 30895
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 gctggtcggtgggtggcgagg 33 ||||||||||||||||||||| Sbjct: 27522714 gctggtcggtgggtggcgagg 27522694
>gb|AC093415.2| Homo sapiens chromosome 3 clone RP11-586N22, complete sequence Length = 196641 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 608 tgcatgcatagttcagtggtc 628 ||||||||||||||||||||| Sbjct: 7872 tgcatgcatagttcagtggtc 7852
>emb|AL357872.23| Human DNA sequence from clone RP11-308P9 on chromosome 9 Contains a CpG island, complete sequence Length = 93172 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1054 ttttgaatctgaagacacaat 1074 ||||||||||||||||||||| Sbjct: 4356 ttttgaatctgaagacacaat 4376
>gb|AC090493.4| Genomic sequence for Mus musculus, clone RP23-201D19,, complete sequence Length = 208651 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1144 cactgctgggttccttccagc 1164 ||||||||||||||||||||| Sbjct: 149281 cactgctgggttccttccagc 149261
>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19, complete sequence Length = 182182 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 856 ataatttgattgattgattga 836
>emb|BX663503.10| Zebrafish DNA sequence from clone CH211-136A13 in linkage group 18, complete sequence Length = 176960 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 114282 ataatttgattgattgattga 114302
>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a novel gene, complete sequence Length = 189495 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1539 gtttgtttcttgcctccaaga 1559 ||||||||||||||||||||| Sbjct: 96231 gtttgtttcttgcctccaaga 96251
>emb|AL596256.14| Mouse DNA sequence from clone RP23-259D24 on chromosome 11, complete sequence Length = 169405 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 27093 ataatttgattgattgattga 27113
>emb|CR385069.8| Zebrafish DNA sequence from clone DKEY-22C20 in linkage group 13, complete sequence Length = 68470 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 40235 ataatttgattgattgattga 40255
>emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 in linkage group 19, complete sequence Length = 137958 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 136814 ataatttgattgattgattga 136794
>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains the gene for a novel protein (zgc:63880), the 3' end of the gene for a novel protein similar to vertebrate KCND2, the 5' end of the ing3 gene for inhibitor of growth family member 3 and a CpG island, complete sequence Length = 200582 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 182108 ataatttgattgattgattga 182088
>gb|AC069027.9|AC069027 Homo sapiens chromosome 18 clone RP11-63N3, complete sequence Length = 144631 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1312 gtctgcttttgtatcctgtttcctg 1336 ||||||||||| ||||||||||||| Sbjct: 133836 gtctgcttttgaatcctgtttcctg 133812
>gb|AC156280.5| Mus musculus 6 BAC RP24-314B4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 194695 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 42375 ataatttgattgattgattga 42355
>emb|BX950205.10| Zebrafish DNA sequence from clone CH211-226H8 in linkage group 22, complete sequence Length = 198379 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 75533 ataatttgattgattgattga 75513
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 gctggtcggtgggtggcgagg 33 ||||||||||||||||||||| Sbjct: 119123 gctggtcggtgggtggcgagg 119143
>gb|AC073043.5| Homo sapiens BAC clone RP11-15N15 from 2, complete sequence Length = 165854 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1515 aggggtttcatctcagaacaa 1535 ||||||||||||||||||||| Sbjct: 51024 aggggtttcatctcagaacaa 51044
>dbj|AP006242.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-713K14, complete sequence Length = 167380 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 tgcatgcatagttcagtggtc 628 ||||||||||||||||||||| Sbjct: 43190 tgcatgcatagttcagtggtc 43210
>dbj|AP003472.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB173C10, complete sequence Length = 103804 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 201 aatttgattgattgattgacgagcc 225 |||||||||||||||||||| |||| Sbjct: 59671 aatttgattgattgattgaccagcc 59695
>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228652 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 608 tgcatgcatagttcagtggtc 628 ||||||||||||||||||||| Sbjct: 183699 tgcatgcatagttcagtggtc 183679
>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence Length = 222061 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ataatttgattgattgattga 219 ||||||||||||||||||||| Sbjct: 114479 ataatttgattgattgattga 114499
>emb|Z46795.1|CET19E10 Caenorhabditis elegans Cosmid T19E10, complete sequence Length = 19463 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1779 ctacggacctcagtctgaaac 1799 ||||||||||||||||||||| Sbjct: 1720 ctacggacctcagtctgaaac 1700
>emb|AL589650.20| Mouse DNA sequence from clone RP23-81H23 on chromosome 15, complete sequence Length = 197660 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1144 cactgctgggttccttccagc 1164 ||||||||||||||||||||| Sbjct: 58165 cactgctgggttccttccagc 58145
>dbj|D14839.1|RATFGF Rat mRNA for FGF-9, complete cds Length = 1084 Score = 42.1 bits (21), Expect = 7.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 643 ttcacaataaatgaagcaagtggcc 667 |||||||||||| |||||||||||| Sbjct: 1032 ttcacaataaatcaagcaagtggcc 1008
>dbj|AP000496.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308, anti-oncogene region, section 4/5 Length = 100000 Score = 42.1 bits (21), Expect = 7.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 tgcatgcatagttcagtggtc 628 ||||||||||||||||||||| Sbjct: 70357 tgcatgcatagttcagtggtc 70377 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 333,482,949 Number of extensions: 17465170 Number of successful extensions: 404504 Number of sequences better than 10.0: 46 Number of HSP's gapped: 404504 Number of HSP's successfully gapped: 46 Length of query: 1837 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1814 Effective length of database: 18,503,978,556 Effective search space: 33566217100584 Effective search space used: 33566217100584 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)