>LOC_Os03g04750:12003.t00351:unspliced-genomic 60S ribosomal protein L21, putative, expressed|
Length = 2005
Score = 194 bits (419), Expect(3) = e-106
Identities = 79/93 (84%), Positives = 86/93 (92%)
Frame = +3 / +3
Query: 327 QVGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPG 506
QVGNRII+KRIHVRVEHVQPSRC EE RK+ ND+LKA+AKARGEVISTKRQP GPKPG
Sbjct: 1374 QVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPG 1553
Query: 507 FMVEGTTIETVTPIPYDVVNDLKGGY*SACFLS 605
FMVEG T+ETVTPIPYDVVNDLKGGY*+ACFL+
Sbjct: 1554 FMVEGATLETVTPIPYDVVNDLKGGY*NACFLN 1652
Score = 191 bits (412), Expect(3) = e-106
Identities = 75/80 (93%), Positives = 79/80 (98%)
Frame = +3 / +1
Query: 93 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGR 272
MPAGHGLR+RTRDLFARPFRKKGYI LTTYLRTYK+G++VDVKVNGAVHKGMPHKFYHGR
Sbjct: 79 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 258
Query: 273 TGRVWNVTKRAIGVEINKQV 332
TGRVWNVTKRAIGVEINKQV
Sbjct: 259 TGRVWNVTKRAIGVEINKQV 318
Score = 45.1 bits (92), Expect(3) = e-106
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1 / +2
Query: 664 SSFCSVESELLCG*H*RFCVVGFILVL 744
S FC +ESE LCG*H*RF +V FILV+
Sbjct: 1703 SPFCCLESEPLCG*H*RFAMVEFILVM 1783
Score = 165 bits (355), Expect(5) = 3e-74
Identities = 72/82 (87%), Positives = 72/82 (87%)
Frame = -2 / -3
Query: 331 TCLLISTPMARLVTFQTRPVRPW*NLCGMPLWTAPFTLTSTCSPTL*VRR*VVSAMYPFF 152
TCLLISTPMARLVTFQTRPVRPW*NLCGMPL TAPFTLTST SP L V R*VVS M PF
Sbjct: 317 TCLLISTPMARLVTFQTRPVRPW*NLCGMPLCTAPFTLTST*SPILYVLR*VVSGM*PFL 138
Query: 151 RNGRANRSRVRDRSPCPAGIFP 86
RNGRA RSRVR RSPCPAGIFP
Sbjct: 137 RNGRAKRSRVRARSPCPAGIFP 72
Score = 77.1 bits (162), Expect(5) = 3e-74
Identities = 31/37 (83%), Positives = 33/37 (89%)
Frame = -2 / -1
Query: 568 SLTTSYGMGVTVSMVVPSTMNPGLGPAGCLFVLMTSP 458
SLTTSYGMGVTVS V PSTM PGLGP+GCL VL+TSP
Sbjct: 1615 SLTTSYGMGVTVSSVAPSTMKPGLGPSGCLLVLITSP 1505
Score = 53.8 bits (111), Expect(5) = 3e-74
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -2 / -1
Query: 394 HLDGCTCSTRTWILFLMIRLPT 329
HLDG TCSTRTWILFLM+RLPT
Sbjct: 1441 HLDGWTCSTRTWILFLMMRLPT 1376
Score = 35.0 bits (70), Expect(5) = 3e-74
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -3 / -1
Query: 741 DENETDHTKSLMLTTEKFRLHRAKR 667
+E+E +H+KSLMLTT +FR KR
Sbjct: 1780 NEDEFNHSKSLMLTT*RFRFQTTKR 1706
Score = 32.7 bits (65), Expect(5) = 3e-74
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3 / -2
Query: 417 SSGGTPHCTWMAARA 373
SSGG P CTWMA A
Sbjct: 1464 SSGGAPRCTWMAGHA 1420
Score = 107 bits (229), Expect(2) = 2e-27
Identities = 46/81 (56%), Positives = 60/81 (74%)
Frame = -1 / -3
Query: 602 QETSALVTTLEIVDDIVRDGCDCLNGGALHHEPGLGPCWLPLCADDLTTGLGLRLQLVIV 423
QETS LVTTLEI+D I+R+G + L L+HE G L L AD+LTTGLG+ L+L+++
Sbjct: 1649 QETSILVTTLEIIDHIIRNGGNSLQRSTLNHETRFGSLGLSLGADNLTTGLGISLELIVL 1470
Query: 422 EFPLEELLIAPGWLHVLNTDM 360
+FP ELL APGWL +L+TDM
Sbjct: 1469 DFPQAELLGAPGWLDMLHTDM 1407
Score = 35.0 bits (70), Expect(2) = 2e-27
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1 / -2
Query: 740 TRMKPTTQNL*C*PQRSSDSTEQ 672
TRM T NL*C*P R SDS +Q
Sbjct: 1779 TRMNSTIANL*C*PHRGSDSRQQ 1711
Score = 40.5 bits (82), Expect(5) = 3e-19
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +2 / +2
Query: 338 PDHQEEDPCPC*ARAAIQVQ*G 403
P HQEEDPCPC A AIQV G
Sbjct: 1385 PHHQEEDPCPCGACPAIQVHRG 1450
Score = 37.3 bits (75), Expect(5) = 3e-19
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2 / +3
Query: 245 HAAQVLPRPHGPRLE 289
HAAQVLPRPH PRLE
Sbjct: 231 HAAQVLPRPHRPRLE 275
Score = 36.8 bits (74), Expect(5) = 3e-19
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2 / +2
Query: 473 HKEAASRAQARVXXXXXXXXDSHTHPVRCRQRSQGWLLERLFPE 604
H+E A Q D + H V C Q SQGWLLE LF E
Sbjct: 1520 HQETARGTQTWFHG*GCYAGDCYPHSV*CGQ*SQGWLLECLFLE 1651
Score = 35.9 bits (72), Expect(5) = 3e-19
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3 / +1
Query: 672 LLCGV*TSLWLTLKILCGRFHSR 740
LL G+*TS+WLTLKI G H R
Sbjct: 1711 LLSGI*TSMWLTLKICYG*IHPR 1779
Score = 24.4 bits (47), Expect(5) = 3e-19
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 152 EEGVHRTHHLP 184
+EG+H HHLP
Sbjct: 138 QEGLHPAHHLP 170
Score = 33.6 bits (67), Expect(3) = 9e-08
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +1 / +1
Query: 472 AQRGSQQGPSPGSWWRAPPLRQSHPSRTMSSTISRVVTR 588
A R S + P+ SW R R P R M S ISRVVTR
Sbjct: 1519 APRDSPRDPNLVSWLRVLRWRLLPPFRMMWSMISRVVTR 1635
Score = 30.4 bits (60), Expect(3) = 9e-08
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1 / +1
Query: 361 MSVLSTCSHPGAMRSSSRGNS 423
MSV S SHPGA RSS+ G S
Sbjct: 1408 MSVWSMSSHPGAPRSSA*GKS 1470
Score = 28.6 bits (56), Expect(3) = 9e-08
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 671 FALWSLNFSVVNIKD 715
F +W+LN VVNIKD
Sbjct: 1710 FVVWNLNLYVVNIKD 1754
Score = 36.8 bits (74), Expect(2) = 1e-05
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = -3 / -2
Query: 603 SGNKRSSNHP*DR*RHRTGWV*LSQWWCPPP*TR 502
S NK SSNHP*D * H T W * S P P* +
Sbjct: 1650 SRNKHSSNHP*DH*PHHTEWG*QSPA*HPQP*NQ 1549
Score = 31.8 bits (63), Expect(2) = 1e-05
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -2 / -3
Query: 739 RE*NRPHKIFNVNHREVQTPQSK 671
R * +P +IFNVNH EVQ P +K
Sbjct: 1778 RG*IQP*QIFNVNHIEVQIPDNK 1710
>LOC_Os10g32820:12010.t02590:unspliced-genomic 60S ribosomal protein L21, putative, expressed|
Length = 1541
Score = 195 bits (421), Expect(2) = 3e-97
Identities = 77/80 (96%), Positives = 79/80 (98%)
Frame = +3 / +1
Query: 93 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGR 272
MPAGHGLR+RTRDLFARPFRKKGYI LTTYLRTYK+GEHVDVKVNGAVHKGMPHKFYHGR
Sbjct: 94 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 273
Query: 273 TGRVWNVTKRAIGVEINKQV 332
TGRVWNVTKRAIGVEINKQV
Sbjct: 274 TGRVWNVTKRAIGVEINKQV 333
Score = 183 bits (395), Expect(2) = 3e-97
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +3 / +1
Query: 330 VGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGF 509
VGNRII+KRIHVRVEHVQPSRC EEF RK+ ND+LKA+AKARGEVISTKRQP GPKPGF
Sbjct: 1066 VGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGF 1245
Query: 510 MVEGTTIETVTPIPYDVVNDLKGGY* 587
MVEG T+ETVTPIPYDVVNDLKGGY*
Sbjct: 1246 MVEGATLETVTPIPYDVVNDLKGGY* 1323
Score = 172 bits (370), Expect(4) = 8e-75
Identities = 77/92 (83%), Positives = 78/92 (84%)
Frame = -2 / -1
Query: 331 TCLLISTPMARLVTFQTRPVRPW*NLCGMPLWTAPFTLTSTCSPTL*VRR*VVSAMYPFF 152
TCLLISTPMARLVTFQTRPVRPW*NLCG+PL TAPFTLTSTCSP L*VRR*VVS MYPFF
Sbjct: 332 TCLLISTPMARLVTFQTRPVRPW*NLCGIPLCTAPFTLTSTCSPIL*VRR*VVSGMYPFF 153
Query: 151 RNGRANRSRVRDRSPCPAGIFPFLLAFSLPAA 56
NGRANRSRVR RSP PAGI SL AA
Sbjct: 152 LNGRANRSRVRARSPWPAGILAAPPPASLRAA 57
Score = 81.3 bits (171), Expect(4) = 8e-75
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -2 / -1
Query: 568 SLTTSYGMGVTVSMVVPSTMNPGLGPAGCLFVLMTSP 458
SLTTSYGMGVTVS V PSTM PGLGP GCLFVLMTSP
Sbjct: 1304 SLTTSYGMGVTVSSVAPSTMKPGLGPCGCLFVLMTSP 1194
Score = 55.1 bits (114), Expect(4) = 8e-75
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -2 / -1
Query: 394 HLDGCTCSTRTWILFLMIRLPT 329
HLDGCTCSTRTWILFL++R PT
Sbjct: 1130 HLDGCTCSTRTWILFLIMRFPT 1065
Score = 36.8 bits (74), Expect(4) = 8e-75
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 417 SSGGTPHCTWMAARA 373
SSGGTP CTWMAA A
Sbjct: 1153 SSGGTPQCTWMAAHA 1109
Score = 111 bits (238), Expect(3) = 6e-25
Identities = 50/84 (59%), Positives = 59/84 (70%)
Frame = -1 / -3
Query: 611 ASAQETSALVTTLEIVDDIVRDGCDCLNGGALHHEPGLGPCWLPLCADDLTTGLGLRLQL 432
A A LVTTLEI+D IVRDG D L L+HE GL LPL ADDLTT LG+ L+L
Sbjct: 1347 AQADRLKILVTTLEIIDHIVRDGGDSLQCCTLNHEAGLRTLRLPLRADDLTTSLGICLEL 1168
Query: 431 VIVEFPLEELLIAPGWLHVLNTDM 360
V+++ P ELL APGWLH+L+TDM
Sbjct: 1167 VVLDLPQAELLSAPGWLHMLHTDM 1096
Score = 23.5 bits (45), Expect(3) = 6e-25
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / -3
Query: 185 QVGGECDVPLL 153
+VGGE DVPLL
Sbjct: 186 EVGGERDVPLL 154
Score = 22.1 bits (42), Expect(3) = 6e-25
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1 / -3
Query: 272 AAVVELVRH 246
AAVVELVRH
Sbjct: 273 AAVVELVRH 247
Score = 79.0 bits (166), Expect(3) = 3e-21
Identities = 40/76 (52%), Positives = 45/76 (59%)
Frame = +1 / +2
Query: 361 MSVLSTCSHPGAMRSSSRGNSTMTXXXXXXXXXXXXXAQRGSQQGPSPGSWWRAPPLRQS 540
MSV S CSHPGA+RSS+ G S T A+RGS++ SP SW R R S
Sbjct: 1097 MSVWSMCSHPGALRSSA*GRSRTTSSRQMPRLVVRSSARRGSRRVLSPASWLRVQHWRLS 1276
Query: 541 HPSRTMSSTISRVVTR 588
PSRTM S ISRVVTR
Sbjct: 1277 PPSRTMWSMISRVVTR 1324
Score = 33.6 bits (67), Expect(3) = 3e-21
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2 / +3
Query: 248 AAQVLPRPHGPRLE 289
AAQVLPRPH PRLE
Sbjct: 249 AAQVLPRPHRPRLE 290
Score = 32.2 bits (64), Expect(3) = 3e-21
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 152 EEGVHRTHHLPAHL 193
EEGVH HHLP HL
Sbjct: 153 EEGVHPAHHLPPHL 194
Score = 46.4 bits (95), Expect(2) = 5e-12
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2 / +3
Query: 473 HKEAASRAQARVXXXXXXXXDSHTHPVRCRQRSQGWLL 586
H+EAA+ + AR+ D H HPVRC Q SQGWLL
Sbjct: 1209 HEEAAAGS*ARLHG*GCNTGDCHPHPVRCGQ*SQGWLL 1322
Score = 44.1 bits (90), Expect(2) = 5e-12
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +2 / +3
Query: 338 PDHQEEDPCPC*ARAAIQVQ*GV 406
P +QEEDPCPC A AAIQV *GV
Sbjct: 1074 PHYQEEDPCPCGACAAIQVH*GV 1142
Score = 38.2 bits (77), Expect = 0.072
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -3 / -2
Query: 585 SNHP*DR*RHRTGWV*LSQWWCPPP*TR 502
SNHP*D * HRTGW * S P P*+R
Sbjct: 1321 SNHP*DH*PHRTGWG*QSPVLHPQP*SR 1238
>LOC_Os05g36010:12005.t03194:unspliced-genomic subtilisin-like protease precursor, putative, expressed|
Length = 2797
Score = 28.6 bits (56), Expect(2) = 3.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3 / +1
Query: 447 AKARGEVISTKRQPAGPKPGFMVEGT 524
A RG +ST GP PGF+ GT
Sbjct: 970 AMQRGVFVSTSAGNDGPDPGFLHNGT 1047
Score = 25.4 bits (49), Expect(2) = 3.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 99 AGHGLRSRTRDL 134
AGHG R RTRDL
Sbjct: 45 AGHGDRRRTRDL 80
>LOC_Os07g44280:12007.t04068:unspliced-genomic disease resistance response protein 206, putative, expressed|
Length = 901
Score = 26.3 bits (51), Expect(2) = 8.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2 / -1
Query: 548 PVRCRQRSQGWLLERLFP 601
P CR+RS+GW R P
Sbjct: 349 PPSCRRRSRGWTRRRSAP 296
Score = 22.1 bits (42), Expect(2) = 8.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3 / -2
Query: 360 HVRVEHVQPSRCNEEFLQRKLNNDKLK 440
H+ V V+P R + LQR+ L+
Sbjct: 447 HLAVVEVEPLRPHHRLLQRRRQRPPLR 367
>LOC_Os03g62690:12003.t05495:unspliced-genomic pentatricopeptide repeat protein PPR1106-17, putative, expressed|
Length = 5887
Score = 25.8 bits (50), Expect(2) = 9.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1 / +1
Query: 511 WWRAPPLRQSHP 546
WWRAP L +S P
Sbjct: 364 WWRAPTLARSAP 399
Score = 22.1 bits (42), Expect(2) = 9.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1 / +1
Query: 367 VLSTCSHPGAMRSSSRG 417
+LSTCS R+SSRG
Sbjct: 199 MLSTCSTECRGRTSSRG 249
>LOC_Os04g56030:12004.t05075:unspliced-genomic expressed protein|
Length = 862
Score = 26.7 bits (52), Expect(2) = 9.8
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3 / -3
Query: 528 WWCPPP 511
WWCPPP
Sbjct: 605 WWCPPP 588
Score = 24.0 bits (46), Expect(2) = 9.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = -2 / -3
Query: 277 PVRPW*NLCGMPLWTAPFTLTSTC 206
P PW C P W P L+ C
Sbjct: 596 PPPPWSPPCPWPWWWCPPPLSPPC 525
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 239,940,869
Number of extensions: 3540766
Number of successful extensions: 18491
Number of sequences better than 10.0: 37
Length of query: 261
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 212
Effective length of database: 52,856,264
Effective search space: 11205527968
Effective search space used: 11205527968
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)