ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf137e18 |
|---|---|
| Clone Library Name | barley_pub |
>Q6L3Z7:R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 - Solanum| demissum (Wild potato) Length = 1317 Score = 41.6 bits (96), Expect = 0.010 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 5/77 (6%) Frame = +3 Query: 132 EMTKDEDFKLVKIQTHVLRVNIHCDGCKHKVK--KLLQKIEGVYSVAIDVDNHKVTVTGS 305 E ++ +FKLV I+ VL+ +I+ + K +++ K L + GV SV D+D KVTVTG Sbjct: 1239 EDNQNTNFKLVIIKKMVLKFDIYQNHDKGRLETFKKLVPLPGVKSVRFDMDEKKVTVTGV 1298 Query: 306 VDS---EALIRKLTRGG 347 +D+ + ++ KL + G Sbjct: 1299 MDANEVQLVVSKLRKRG 1315
>Q8ZCA7:ATCU_YERPE Copper-transporting P-type ATPase - Yersinia pestis| Length = 961 Score = 40.4 bits (93), Expect = 0.022 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = +3 Query: 180 VLRVNIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTRGGKHAE 359 +L + C C KV+ LQ+++GV +++ VTG+ ++EALI + G AE Sbjct: 230 LLLTGMSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAE 289 Query: 360 L 362 + Sbjct: 290 I 290 Score = 35.0 bits (79), Expect = 0.91 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +3 Query: 168 IQTHVLRVN-IHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTRG 344 +QT +L + + C C +VK L+ E V+ ++V H VTG D+ ALI + + Sbjct: 2 LQTTLLALQGLSCMNCAQRVKAALESREDVHHAEVNV--HYAKVTGEADTHALIETIKQT 59 Query: 345 GKHA 356 G A Sbjct: 60 GYQA 63
>Q6L403:R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 - Solanum| demissum (Wild potato) Length = 1312 Score = 39.3 bits (90), Expect = 0.048 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Frame = +3 Query: 132 EMTKDEDFKLVKIQTHVLRVNIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVD 311 E ++ +FKLV I+ + +V++ + + + K L + G+ SVA D + K+TVTG +D Sbjct: 1236 EDNQNTNFKLVVIKKMMWKVDVGVNKGRLETFKRLAPLPGIKSVAFDFNKKKLTVTGDMD 1295 Query: 312 S---EALIRKLTRGG 347 + + ++ KL + G Sbjct: 1296 ANEVQLVVSKLRKRG 1310
>P04129:MERP_SHIFL Mercuric transport protein periplasmic component precursor -| Shigella flexneri Length = 91 Score = 35.4 bits (80), Expect = 0.70 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +3 Query: 171 QTHVLRV-NIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTR 341 QT L V + C C VKK L K+EGV V + + + VT D++A ++KLT+ Sbjct: 22 QTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTK 78
>P13113:MERP_SERMA Mercuric transport protein periplasmic component precursor -| Serratia marcescens Length = 91 Score = 34.7 bits (78), Expect = 1.2 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 171 QTHVLRV-NIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTRGG 347 QT L V + C C VKK + K+EGV V + + + VT D++ ++KLT+ Sbjct: 22 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVNVTFETREAVVTFD-DAKTSVQKLTKAT 80 Query: 348 KHA 356 + A Sbjct: 81 EDA 83
>Q6FU61:CCS1_CANGA Superoxide dismutase 1 copper chaperone - Candida glabrata (Yeast)| (Torulopsis glabrata) Length = 239 Score = 33.9 bits (76), Expect = 2.0 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = +3 Query: 189 VNIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTRGGKHA 356 V +HC C +KK L I G+ + D+ ++V V +I L G+ A Sbjct: 14 VPMHCTDCTDDIKKCLNGITGIKDLQFDISQQMMSVNSCVAPSVIINALRDCGRDA 69
>Q6L3Z4:R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 - Solanum| demissum (Wild potato) Length = 1348 Score = 33.5 bits (75), Expect = 2.7 Identities = 21/81 (25%), Positives = 42/81 (51%) Frame = +3 Query: 75 SSSILSSQRKLANSGGSAQEMTKDEDFKLVKIQTHVLRVNIHCDGCKHKVKKLLQKIEGV 254 S S++ S R + + E +++ +FKLV ++ VL+ + + K L + G+ Sbjct: 1256 SESVVKSARNIQET---QVEDSQNNNFKLVIVKKMVLKFDTSNEKEISKAFDRLLSLPGI 1312 Query: 255 YSVAIDVDNHKVTVTGSVDSE 317 S+A+D + K V G +D++ Sbjct: 1313 QSIAVDSNEKKFIVIGDMDAD 1333
>Q51770:MERP_PSEFL Mercuric transport protein periplasmic component precursor -| Pseudomonas fluorescens Length = 91 Score = 33.5 bits (75), Expect = 2.7 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 171 QTHVLRV-NIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTRGG 347 QT L V + C C VKK + K++GV V + + + VT D++ ++KLT+ Sbjct: 22 QTVTLSVPGMTCSACPITVKKAISKVDGVSKVDVTFETREAVVTFD-DAKTSVQKLTKAT 80 Query: 348 KHA 356 + A Sbjct: 81 EDA 83
>Q6C961:XRN2_YARLI 5'-3' exoribonuclease 2 - Yarrowia lipolytica (Candida lipolytica)| Length = 1010 Score = 32.7 bits (73), Expect = 4.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 999 GIQGYTGGGFSHPSSYGAAGYGG 1067 G QGY GGG+ YG GYGG Sbjct: 969 GGQGYGGGGYGGGQGYGGGGYGG 991
>Q8A988:SYP_BACTN Prolyl-tRNA synthetase - Bacteroides thetaiotaomicron| Length = 497 Score = 32.7 bits (73), Expect = 4.5 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 195 IHCDGCKHKVKKLLQKIE-GVYSVAIDVDNHKVTVTGSVDSEALIRKLTRGG 347 + CDG + V+KLL++I+ +Y A+D N K+T + E K+ GG Sbjct: 389 VTCDGIETYVQKLLEEIQANIYKKALDYRNSKITTVDTY--EEFKEKIEEGG 438
>P94186:MERP_ALCSP Mercuric transport protein periplasmic component precursor -| Alcaligenes sp. Length = 91 Score = 32.7 bits (73), Expect = 4.5 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +3 Query: 171 QTHVLRV-NIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTR 341 QT L V + C C VKK + K+EGV + + + + VT D++ ++KLT+ Sbjct: 22 QTVTLSVPGMTCSTCPITVKKAISKVEGVSKIDVTFETREAVVTFD-DAKTSVQKLTK 78
>P04131:MERP_PSEAE Mercuric transport protein periplasmic component precursor -| Pseudomonas aeruginosa Length = 91 Score = 32.3 bits (72), Expect = 5.9 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +3 Query: 171 QTHVLRV-NIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTR 341 QT L V + C C VKK + ++EGV V + + + VT D++ ++KLT+ Sbjct: 22 QTVTLSVPGMTCSACPITVKKAISEVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTK 78
>Q60048:CADA2_LISMO Probable cadmium-transporting ATPase - Listeria monocytogenes| Length = 711 Score = 32.3 bits (72), Expect = 5.9 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +3 Query: 180 VLRVN-IHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVTVTGSVDSEALIRKLTRGGKHA 356 V RV+ + C C K ++ +++IEGV ++ K+TVTG EA I+++ + G Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG----EASIQQVEQAGAFE 61 Query: 357 EL 362 L Sbjct: 62 HL 63
>P14728:YAV2_XANCV Hypothetical 82 kDa avirulence protein in avrBs3 region -| Xanthomonas campestris pv. vesicatoria Length = 784 Score = 32.0 bits (71), Expect = 7.7 Identities = 23/85 (27%), Positives = 35/85 (41%) Frame = -3 Query: 361 SSACLPPLVSFLMSASESTLPVTVTLWLSTSMATE*TPSIFWSSFLTLCLQPSQCMFTLR 182 SSACLPPL+ + + P W ST + ++ + L L + +R Sbjct: 314 SSACLPPLLLAMATTCSGVRPWA---WHSTGNSA---CTVSSACLPPLLLAMATTCSGVR 367 Query: 181 TWVWILTSLKSSSLVISCAEPPLFA 107 W W T ++ +C PPL A Sbjct: 368 PWAWHSTGNSRCTVSSACLPPPLLA 392
>Q9D3R3:CEP72_MOUSE Centrosomal protein of 72 kDa - Mus musculus (Mouse)| Length = 646 Score = 32.0 bits (71), Expect = 7.7 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Frame = +2 Query: 125 CTRDDQRRGFQAGQDPDPCPEGEHTLRRLQAQGQEAAPEDRRCLLGGHRCGQPQGHGD-- 298 C Q+ + + +P P E +R G+ P DR CL R P D Sbjct: 306 CASSAQKSSLSSQKTVNPLPVPEKYRKRRMPGGRFQVPSDRECLSFLERADGPSSLEDSL 365 Query: 299 -RQRGLRGAHQEA 334 RQ GL G Q A Sbjct: 366 SRQDGLEGQSQVA 378 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 151,490,783 Number of extensions: 2578274 Number of successful extensions: 7374 Number of sequences better than 10.0: 15 Number of HSP's gapped: 7358 Number of HSP's successfully gapped: 16 Length of query: 544 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 426 Effective length of database: 68,319,629 Effective search space: 29104161954 Effective search space used: 29104161954 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
