ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf137d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O46503:ST1C1_RABIT Sulfotransferase 1C1 - Oryctolagus cuniculus ... 32 1.1
2O69407:GRDH_EUBAC Betaine reductase complex component B subunit ... 32 1.1
3O00338:ST1C1_HUMAN Sulfotransferase 1C1 - Homo sapiens (Human) 30 2.2
4Q9P1Y6:K1542_HUMAN RING and PHD-finger domain-containing protein... 31 2.3
5Q9D939:ST1C2_MOUSE Sulfotransferase 1C2 - Mus musculus (Mouse) 29 2.8
6P18834:COL14_CAEEL Cuticle collagen 14 - Caenorhabditis elegans 31 3.1
7P98157:LRP1_CHICK Low-density lipoprotein receptor-related prote... 31 3.1
8O12972:RFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase radic... 30 4.0
9Q60875:ARHG2_MOUSE Rho/Rac guanine nucleotide exchange factor 2 ... 30 5.2
10Q5DRD6:PCDBD_PANTR Protocadherin beta 13 precursor - Pan troglod... 30 6.8
11Q9WTL4:INSRR_MOUSE Insulin receptor-related protein precursor - ... 30 6.8
12Q3J8R1:EFG_NITOC Elongation factor G - Nitrosococcus oceani (str... 30 6.8
13P98163:YL_DROME Putative vitellogenin receptor precursor - Droso... 30 6.9
14P25567:SRO9_YEAST RNA-binding protein SRO9 - Saccharomyces cerev... 29 8.9
15P41229:JAD1C_HUMAN Histone demethylase JARID1C - Homo sapiens (H... 29 8.9
16O44502:COG8_CAEEL Putative conserved oligomeric Golgi complex co... 29 8.9
17P41698:BUD8_YEAST Bud site selection protein 8 - Saccharomyces c... 29 8.9

>O46503:ST1C1_RABIT Sulfotransferase 1C1 - Oryctolagus cuniculus (Rabbit)|
          Length = 296
 Score = 32.3 bits (72), Expect = 1.1
 Identities = 10/29 (34%), Positives = 23/29 (79%)
 Frame = +3

Query: 432 SKCKFVYVWRLL*DCVLCHFYYEKSNEVI 518
           + CKF+YV R + DC++ ++++++ N+V+
Sbjct: 122 NNCKFLYVARNVKDCMVSYYHFQRMNQVL 150



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>O69407:GRDH_EUBAC Betaine reductase complex component B subunit beta - Eubacterium|
           acidaminophilum
          Length = 437

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 2   GGQPGVRLRRDG---VEICRRPLAGDPARPAPPRCFLPRGPLHEELQDDG 142
           GG    R+R+D     ++  + +AG+   PA    F PRG  H+  ++DG
Sbjct: 134 GGNNAGRMRQDMSAMAKVANKIIAGEKIGPADEEGFFPRGKRHQHWREDG 183



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>O00338:ST1C1_HUMAN Sulfotransferase 1C1 - Homo sapiens (Human)|
          Length = 296

 Score = 29.6 bits (65), Expect(2) = 2.2
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +3

Query: 432 SKCKFVYVWRLL*DCVLCHFYYEKSNEVI 518
           + CKF+YV R   DC++ ++++++ N ++
Sbjct: 122 NNCKFLYVARNAKDCMVSYYHFQRMNHML 150



 Score = 20.4 bits (41), Expect(2) = 2.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 257 LPWFRPKRPSHSQGARDMIMP 319
           + W RP +PS  + A+ M  P
Sbjct: 83  IEWARPPQPSGVEKAKAMPSP 103



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>Q9P1Y6:K1542_HUMAN RING and PHD-finger domain-containing protein KIAA1542 - Homo|
           sapiens (Human)
          Length = 1649

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  RDGVEICRRPLAGDPARPAPPRCFLPRGPLHEELQDDGGGG 151
           RD    CR  + G P +PAP R  +   P   +++ D GGG
Sbjct: 652 RDSKPPCRSVVPGPPLKPAPRRTDISELPRIPKIRRDDGGG 692



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>Q9D939:ST1C2_MOUSE Sulfotransferase 1C2 - Mus musculus (Mouse)|
          Length = 296

 Score = 29.3 bits (64), Expect(2) = 2.8
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 432 SKCKFVYVWRLL*DCVLCHFYYEKSNEVIRE 524
           + CKF+YV R   DC++ ++++ + ++V+ E
Sbjct: 122 NNCKFLYVARNAKDCMVSYYHFYRMSQVLPE 152



 Score = 20.4 bits (41), Expect(2) = 2.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 257 LPWFRPKRPSHSQGARDMIMP 319
           + W RP +PS    A +M  P
Sbjct: 83  IEWARPPQPSGVDKANEMPAP 103



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>P18834:COL14_CAEEL Cuticle collagen 14 - Caenorhabditis elegans|
          Length = 345

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 62  AGDPARPAPPRCFLPRGPLHEELQDDGGGGSGVP 163
           AG P RP PP    P GP  E  +  G G SG+P
Sbjct: 273 AGAPGRPGPPGQPGPAGPPGENGKGGGQGPSGLP 306



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>P98157:LRP1_CHICK Low-density lipoprotein receptor-related protein 1 precursor - Gallus|
            gallus (Chicken)
          Length = 4543

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 321  HGMIMSRAPWECDGRLGLNQGSRLSAEPSFRTSPPQSRCCPSY 193
            +G  +S + WECDG    +  S   A  + R S P+S+C  S+
Sbjct: 2865 NGRCLSNSQWECDGEFDCHDHSD-EAPKNPRCSSPESKCNDSF 2906



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>O12972:RFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase radical fringe - Gallus|
           gallus (Chicken)
          Length = 372

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 50  RRPLAGDPARPAPPRCFLPRGPLHEELQDDGGGGSG 157
           RRP    P+RP+P R   P G    ++  D GGGSG
Sbjct: 38  RRPPPAGPSRPSPKREARPAG---SDVPGDRGGGSG 70



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>Q60875:ARHG2_MOUSE Rho/Rac guanine nucleotide exchange factor 2 - Mus musculus (Mouse)|
          Length = 985

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = -2

Query: 155  RSLHRHHPVAPREAGRVGESNEEVQDEQD-----RQQAAGGRSPPHHDVD 21
            RSLHR  P   REA  +G   + +QD  D      ++ +   SPPH   D
Sbjct: 915  RSLHR--PFDDREAQELGSPEDRLQDSSDPDTGSEEEVSSRLSPPHSPRD 962



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>Q5DRD6:PCDBD_PANTR Protocadherin beta 13 precursor - Pan troglodytes (Chimpanzee)|
          Length = 798

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 38  VEICRRPLAGDPARPAPPRCFLPRGPLHEELQDDGGGGS 154
           V +CRR  A    R     C +P GPL   L D GG G+
Sbjct: 711 VRLCRRSRAASVGR-----CLVPEGPLPGHLVDMGGTGT 744



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>Q9WTL4:INSRR_MOUSE Insulin receptor-related protein precursor - Mus musculus (Mouse)|
          Length = 1300

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 230 EHLLHNRVAVPPIALS*ITSNATERRSLHRHHPVAPREAG--RVGESNEEVQDEQDR 66
           E+ LH+ + +P       + N   +R   RH     REAG  R+G++N + + ++D+
Sbjct: 714 ENFLHHAITIPKAPWKVTSINKNPQRDSERHR----REAGLLRLGKNNSDFEIQEDK 766



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>Q3J8R1:EFG_NITOC Elongation factor G - Nitrosococcus oceani (strain ATCC 19707 /|
           NCIMB 11848)
          Length = 697

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 126 SYRMMAVEAPAFRGVRGDSGEGNRRDSNAIVEEMFGRMALQTTDYPGSG 272
           SY    VE P  +GV+ D  EG R  S+   EE F  +A +    P  G
Sbjct: 284 SYMPSPVEVPPIKGVQKDETEGERHASD---EEPFAALAFKIASDPYVG 329



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>P98163:YL_DROME Putative vitellogenin receptor precursor - Drosophila melanogaster|
            (Fruit fly)
          Length = 1984

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 294  WECDGRLGLNQGSRLSAEPSFRTSPPQSRCC 202
            WECDGR+  + GS    +   R+ PP  + C
Sbjct: 1175 WECDGRIDCSDGSDEHDKCVHRSCPPDMQRC 1205



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>P25567:SRO9_YEAST RNA-binding protein SRO9 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 434

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 176 TSNATERRSLHRHHPVAPREAGR------VGESNEEVQDEQDRQQAAGGRSPPHH 30
           +SNA  ++  H+H+    ++  +      VGE + +    Q+  Q+   + PPHH
Sbjct: 121 SSNANRKKKHHQHNAKKQQQMKKDGFESAVGEEDSKDATSQENGQSTQQQQPPHH 175



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>P41229:JAD1C_HUMAN Histone demethylase JARID1C - Homo sapiens (Human)|
          Length = 1560

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 125  PREAGRVGESNEEVQDEQDRQQAAGGRSPP 36
            P+     G   EEVQ+E++ ++  GG  PP
Sbjct: 1479 PKRVRSSGPEAEEVQEEEELEEETGGEGPP 1508



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>O44502:COG8_CAEEL Putative conserved oligomeric Golgi complex component 8 -|
           Caenorhabditis elegans
          Length = 743

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 170 NATERRSLHRHHPVAPREAGRVGESNEEVQDEQDRQQAAGGRSPPHHDVDV 18
           N  E  +   H+P A  E G   E N+E+++++ ++       P  H++D+
Sbjct: 629 NFGESEAKAAHNPEAHLELGETSE-NQEIREQEHKEVVITSTEPEFHEIDL 678



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>P41698:BUD8_YEAST Bud site selection protein 8 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 603

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
 Frame = +3

Query: 174 GDSGEGNRRDS-----NAIVEEMFGRMALQTTDYPGS----GPNDRHTPKAPGT*SCHVK 326
           G  GEG   D        + E  F    L+  +  GS      +D H+P APGT +  +K
Sbjct: 252 GSKGEGETEDEVIDQYEPVNESKFIPHKLKIPEKAGSIKSSTSDDSHSPGAPGTSARKIK 311

Query: 327 VQMLSSLTRNIQYMYRRFISSSSN*NLEPIKMGDYSKCKF 446
           +    SL  NI  +     S SSN +     +G  ++ KF
Sbjct: 312 IPQSPSLIGNI--LIPSHNSDSSNESSPKDHIGHNNEEKF 349


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 93,545,212
Number of extensions: 2036648
Number of successful extensions: 5138
Number of sequences better than 10.0: 17
Number of HSP's gapped: 5130
Number of HSP's successfully gapped: 19
Length of query: 179
Length of database: 100,686,439
Length adjustment: 106
Effective length of query: 73
Effective length of database: 71,611,169
Effective search space: 5227615337
Effective search space used: 5227615337
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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