| Clone Name | FLbaf134l21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone mth2-62p11, complete sequence Length = 95165 Score = 50.1 bits (25), Expect = 0.048 Identities = 25/25 (100%) Strand = Plus / Plus Query: 918 tggatgaaaatatgaatccaaaaat 942 ||||||||||||||||||||||||| Sbjct: 61284 tggatgaaaatatgaatccaaaaat 61308
>ref|XM_682582.1| PREDICTED: Danio rerio similar to Phosphorylase b kinase gamma catalytic chain, skeletal muscle isoform (Phosphorylase kinase gamma subunit 1) (LOC559261), partial mRNA Length = 1323 Score = 48.1 bits (24), Expect = 0.19 Identities = 48/56 (85%) Strand = Plus / Plus Query: 878 aatattgttcacctggatcttaagccggagaacatactgatggatgaaaatatgaa 933 |||||||| ||| |||||| |||||||||||||| || ||||||| |||||||| Sbjct: 271 aatattgtacacagggatctgaagccggagaacatccttctggatgacaatatgaa 326
>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15, complete sequence Length = 205794 Score = 48.1 bits (24), Expect = 0.19 Identities = 48/56 (85%) Strand = Plus / Minus Query: 878 aatattgttcacctggatcttaagccggagaacatactgatggatgaaaatatgaa 933 |||||||| ||| |||||| |||||||||||||| || ||||||| |||||||| Sbjct: 64998 aatattgtacacagggatctgaagccggagaacatccttctggatgacaatatgaa 64943
>gb|AC192328.2| Medicago truncatula chromosome 2 BAC clone mth2-55p8, complete sequence Length = 116090 Score = 46.1 bits (23), Expect = 0.75 Identities = 32/35 (91%) Strand = Plus / Plus Query: 920 gatgaaaatatgaatccaaaaataaccgactttgg 954 |||||||| ||||||||||||||| | |||||||| Sbjct: 79391 gatgaaaacatgaatccaaaaatatctgactttgg 79425
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 46.1 bits (23), Expect = 0.75 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1795 ttgaagttggtcttgttcggtatttat 1821 |||||||||||||||||| |||||||| Sbjct: 13739249 ttgaagttggtcttgttcagtatttat 13739275
>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 87778 Score = 46.1 bits (23), Expect = 0.75 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1795 ttgaagttggtcttgttcggtatttat 1821 |||||||||||||||||| |||||||| Sbjct: 2558 ttgaagttggtcttgttcagtatttat 2584
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 46.1 bits (23), Expect = 0.75 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1795 ttgaagttggtcttgttcggtatttat 1821 |||||||||||||||||| |||||||| Sbjct: 72850 ttgaagttggtcttgttcagtatttat 72876
>emb|BX005286.6| Zebrafish DNA sequence from clone DKEY-237I9, complete sequence Length = 178225 Score = 46.1 bits (23), Expect = 0.75 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1838 ttgtttttgatttgatgatgtgtgttt 1864 ||||||||||||||||||||| ||||| Sbjct: 43990 ttgtttttgatttgatgatgtttgttt 44016
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 46.1 bits (23), Expect = 0.75 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1795 ttgaagttggtcttgttcggtatttat 1821 |||||||||||||||||| |||||||| Sbjct: 54908 ttgaagttggtcttgttcagtatttat 54934
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2181 tccaagcactggcggttcaccc 2202 |||||||||||||||||||||| Sbjct: 1965554 tccaagcactggcggttcaccc 1965575
>ref|NM_001077612.1| Danio rerio zgc:153009 (zgc:153009), mRNA gb|BC125847.1| Danio rerio zgc:153009, mRNA (cDNA clone MGC:153009 IMAGE:7086317), complete cds Length = 2775 Score = 44.1 bits (22), Expect = 2.9 Identities = 37/42 (88%) Strand = Plus / Plus Query: 892 ggatcttaagccggagaacatactgatggatgaaaatatgaa 933 |||||| |||||||||||||| || ||||||| |||||||| Sbjct: 613 ggatctgaagccggagaacatccttctggatgacaatatgaa 654
>gb|AC189524.1| Brassica rapa subsp. pekinensis clone KBrB092B15, complete sequence Length = 119944 Score = 44.1 bits (22), Expect = 2.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 918 tggatgaaaatatgaatccaaaaata 943 |||||||||| ||||||||||||||| Sbjct: 87370 tggatgaaaagatgaatccaaaaata 87345
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2181 tccaagcactggcggttcaccc 2202 |||||||||||||||||||||| Sbjct: 1473603 tccaagcactggcggttcaccc 1473624
>ref|NM_118461.2| Arabidopsis thaliana kinase (AT4G23320) mRNA, complete cds Length = 1251 Score = 44.1 bits (22), Expect = 2.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1003 agtagttggaacaatgggatacatgccacc 1032 ||||||||||||||| || ||||||||||| Sbjct: 939 agtagttggaacaatcggttacatgccacc 968
>ref|NM_123189.1| Arabidopsis thaliana PR5K; kinase/ transmembrane receptor protein serine/threonine kinase (PR5K) mRNA, complete cds Length = 2316 Score = 44.1 bits (22), Expect = 2.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 899 aagccggagaacatactgatggatgaaaat 928 |||||| |||||||||||||||| |||||| Sbjct: 1483 aagccgcagaacatactgatggacgaaaat 1512
>gb|AC164116.4| Mus musculus BAC clone RP24-242F4 from chromosome 13, complete sequence Length = 155449 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 922 tgaaaatatgaatccaaaaata 943 |||||||||||||||||||||| Sbjct: 120905 tgaaaatatgaatccaaaaata 120884
>ref|XM_532569.2| PREDICTED: Canis familiaris similar to cardiac-MyBP-C associated Ca/CaM kinase (LOC475345), mRNA Length = 3114 Score = 44.1 bits (22), Expect = 2.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 887 cacctggatcttaagccggagaacatactg 916 |||||||| || |||||||||||||||||| Sbjct: 2491 cacctggacctcaagccggagaacatactg 2520
>ref|XM_384230.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04054.1) partial mRNA Length = 1500 Score = 44.1 bits (22), Expect = 2.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 887 cacctggatcttaagccggagaacat 912 |||| ||||||||||||||||||||| Sbjct: 550 caccgggatcttaagccggagaacat 575
>gb|AC148335.4| Mus musculus BAC clone RP23-103H10 from chromosome 10, complete sequence Length = 210685 Score = 44.1 bits (22), Expect = 2.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1821 ttccctgttttaacattttgtttttgattt 1850 ||||||||||| |||||||||| ||||||| Sbjct: 161526 ttccctgttttgacattttgttgttgattt 161555
>ref|XM_658500.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5988.2) partial mRNA Length = 3429 Score = 44.1 bits (22), Expect = 2.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1495 tttcatcggcaaactctcgaagcttt 1520 ||||||||||||| |||||||||||| Sbjct: 2179 tttcatcggcaaagtctcgaagcttt 2154
>gb|AC023085.7| Homo sapiens chromosome 11, clone RP11-513I7, complete sequence Length = 175063 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1827 gttttaacattttgtttttgat 1848 |||||||||||||||||||||| Sbjct: 109978 gttttaacattttgtttttgat 109999
>gb|AC133096.3| Mus musculus BAC clone RP23-271C13 from chromosome 1, complete sequence Length = 195512 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gatgaaatcacatgtggtttct 485 |||||||||||||||||||||| Sbjct: 116240 gatgaaatcacatgtggtttct 116261
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 203 cgccgtggccgggctgcgcggc 224 |||||||||||||||||||||| Sbjct: 1742225 cgccgtggccgggctgcgcggc 1742204
>dbj|AB005247.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXA21 Length = 87841 Score = 44.1 bits (22), Expect = 2.9 Identities = 28/30 (93%) Strand = Plus / Minus Query: 899 aagccggagaacatactgatggatgaaaat 928 |||||| |||||||||||||||| |||||| Sbjct: 81551 aagccgcagaacatactgatggacgaaaat 81522
>emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chromosome 2, complete sequence Length = 77156 Score = 44.1 bits (22), Expect = 2.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1057 cacacgcacacatgacatatatagtc 1082 ||||| |||||||||||||||||||| Sbjct: 12632 cacacacacacatgacatatatagtc 12657
>gb|AC159264.3| Mus musculus BAC clone RP24-67G10 from chromosome 13, complete sequence Length = 164748 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 922 tgaaaatatgaatccaaaaata 943 |||||||||||||||||||||| Sbjct: 155205 tgaaaatatgaatccaaaaata 155226
>gb|U48698.1|ATU48698 Arabidopsis thaliana putative receptor serine/threonine kinase PR5K (PR5K) mRNA, complete cds Length = 2316 Score = 44.1 bits (22), Expect = 2.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 899 aagccggagaacatactgatggatgaaaat 928 |||||| |||||||||||||||| |||||| Sbjct: 1483 aagccgcagaacatactgatggacgaaaat 1512
>emb|CT476825.1| S.lycopersicum DNA sequence from clone LE_HBa-198L24 on chromosome 4, complete sequence Length = 160432 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2736 atatagtatatgttaagagcat 2757 |||||||||||||||||||||| Sbjct: 87537 atatagtatatgttaagagcat 87516 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 549,208,306 Number of extensions: 29273520 Number of successful extensions: 157578 Number of sequences better than 10.0: 28 Number of HSP's gapped: 157578 Number of HSP's successfully gapped: 28 Length of query: 3033 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 3010 Effective length of database: 18,503,978,556 Effective search space: 55696975453560 Effective search space used: 55696975453560 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)