| Clone Name | FLbaf134l10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001058393.1| Oryza sativa (japonica cultivar-group) Os03g0842700 (Os03g0842700) mRNA, complete cds Length = 2004 Score = 436 bits (220), Expect = e-118 Identities = 439/512 (85%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacatacccagg 266 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| | Sbjct: 510 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacatacccaag 569 Query: 267 ctcctcaacaacgaggcttcctggctgattgcagttaaagaactacagaagattaattcc 326 || || |||| ||||| | |||||| ||||||||||||| | || |||||||||||| Sbjct: 570 cttctgcacaatgaggcagcgtggctgcttgcagttaaagagttgcaaaagattaattcc 629 Query: 327 ttcaaatcaccgcgggataagcttctctgtatgatgagctgttgccaagtcatcaataac 386 ||||||||||| || || |||||| || || ||||||||||||||||||||||||||| Sbjct: 630 ttcaaatcaccacgagaaaagcttagttgcatcatgagctgttgccaagtcatcaataac 689 Query: 387 ttgctgctaaacgtgtccatgtcgaatgaccgaacaccatctggcgctgatgaattcctt 446 ||||||||||| ||||| ||||| ||||| ||||||| ||| || |||||||| || ||| Sbjct: 690 ttgctgctaaatgtgtcaatgtcaaatgatcgaacactatcaggggctgatgattttctt 749 Query: 447 cccattctcatttatattaccatcaaggccaatcctcctcagctgcactcaaatctaaag 506 || ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 750 cctattcttatttacattacaatcaaggccaatcctcctcagttgcactcaaatctaaag 809 Query: 507 tttgttcagctcttcagaagagaaactaagcttgtttcggaagtcgaatactatctcaca 566 ||| |||||||||||||||||||||| | |||| | || |||||||||||||||||||| Sbjct: 810 tttattcagctcttcagaagagaaacaaggcttatctctgaagtcgaatactatctcacg 869 Query: 567 aacctcatttcagcaaagatgtttataattaatgttaatggccagtcgctatcaatggaa 626 ||||||||||||||||||||||||||||| ||||||||||| || || || || ||||| Sbjct: 870 aacctcatttcagcaaagatgtttataatgaatgttaatggacactcactgtccatggag 929 Query: 627 gaaactgagtttcagaagcatatggaatctgcaaaactaggtaatcaaatgtctgttgct 686 |||| || ||| |||| |||||||| ||||||| ||| ||||| || || ||||||||| Sbjct: 930 gaaagtgtgttccagacacatatggagtctgcaagacttggtaaccacatatctgttgct 989 Query: 687 agtcctagtagtccacaagggttggctacatc 718 || ||| |||| ||||||| |||| |||||| Sbjct: 990 agcactaatagttcacaaggattgggtacatc 1021 Score = 99.6 bits (50), Expect = 5e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 239 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 298 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgagg 123 || |||||| | |||||| | ||||| |||||| |||||||||||| Sbjct: 299 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgagg 344 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 1341 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 1400 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 1401 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 1460 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 1461 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 1509 Score = 42.1 bits (21), Expect = 9.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 121 aggggctcgagaagtacatcatgaccaagctgttcga 157 ||||||| |||||||| ||||||||||| ||||||| Sbjct: 424 aggggcttgagaagtatatcatgaccaaattgttcga 460
>dbj|AK070821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063L20, full insert sequence Length = 2005 Score = 436 bits (220), Expect = e-118 Identities = 439/512 (85%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacatacccagg 266 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| | Sbjct: 511 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacatacccaag 570 Query: 267 ctcctcaacaacgaggcttcctggctgattgcagttaaagaactacagaagattaattcc 326 || || |||| ||||| | |||||| ||||||||||||| | || |||||||||||| Sbjct: 571 cttctgcacaatgaggcagcgtggctgcttgcagttaaagagttgcaaaagattaattcc 630 Query: 327 ttcaaatcaccgcgggataagcttctctgtatgatgagctgttgccaagtcatcaataac 386 ||||||||||| || || |||||| || || ||||||||||||||||||||||||||| Sbjct: 631 ttcaaatcaccacgagaaaagcttagttgcatcatgagctgttgccaagtcatcaataac 690 Query: 387 ttgctgctaaacgtgtccatgtcgaatgaccgaacaccatctggcgctgatgaattcctt 446 ||||||||||| ||||| ||||| ||||| ||||||| ||| || |||||||| || ||| Sbjct: 691 ttgctgctaaatgtgtcaatgtcaaatgatcgaacactatcaggggctgatgattttctt 750 Query: 447 cccattctcatttatattaccatcaaggccaatcctcctcagctgcactcaaatctaaag 506 || ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 751 cctattcttatttacattacaatcaaggccaatcctcctcagttgcactcaaatctaaag 810 Query: 507 tttgttcagctcttcagaagagaaactaagcttgtttcggaagtcgaatactatctcaca 566 ||| |||||||||||||||||||||| | |||| | || |||||||||||||||||||| Sbjct: 811 tttattcagctcttcagaagagaaacaaggcttatctctgaagtcgaatactatctcacg 870 Query: 567 aacctcatttcagcaaagatgtttataattaatgttaatggccagtcgctatcaatggaa 626 ||||||||||||||||||||||||||||| ||||||||||| || || || || ||||| Sbjct: 871 aacctcatttcagcaaagatgtttataatgaatgttaatggacactcactgtccatggag 930 Query: 627 gaaactgagtttcagaagcatatggaatctgcaaaactaggtaatcaaatgtctgttgct 686 |||| || ||| |||| |||||||| ||||||| ||| ||||| || || ||||||||| Sbjct: 931 gaaagtgtgttccagacacatatggagtctgcaagacttggtaaccacatatctgttgct 990 Query: 687 agtcctagtagtccacaagggttggctacatc 718 || ||| |||| ||||||| |||| |||||| Sbjct: 991 agcactaatagttcacaaggattgggtacatc 1022 Score = 99.6 bits (50), Expect = 5e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 240 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 299 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgagg 123 || |||||| | |||||| | ||||| |||||| |||||||||||| Sbjct: 300 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgagg 345 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 1342 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 1401 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 1402 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 1461 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 1462 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 1510 Score = 42.1 bits (21), Expect = 9.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 121 aggggctcgagaagtacatcatgaccaagctgttcga 157 ||||||| |||||||| ||||||||||| ||||||| Sbjct: 425 aggggcttgagaagtatatcatgaccaaattgttcga 461
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 236 bits (119), Expect = 3e-58 Identities = 215/247 (87%) Strand = Plus / Plus Query: 472 aggccaatcctcctcagctgcactcaaatctaaagtttgttcagctcttcagaagagaaa 531 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 123848 aggccaatcctcctcagttgcactcaaatctaaagtttattcagctcttcagaagagaaa 123907 Query: 532 ctaagcttgtttcggaagtcgaatactatctcacaaacctcatttcagcaaagatgttta 591 | | |||| | || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 123908 caaggcttatctctgaagtcgaatactatctcacgaacctcatttcagcaaagatgttta 123967 Query: 592 taattaatgttaatggccagtcgctatcaatggaagaaactgagtttcagaagcatatgg 651 |||| ||||||||||| || || || || ||||| |||| || ||| |||| ||||||| Sbjct: 123968 taatgaatgttaatggacactcactgtccatggaggaaagtgtgttccagacacatatgg 124027 Query: 652 aatctgcaaaactaggtaatcaaatgtctgttgctagtcctagtagtccacaagggttgg 711 | ||||||| ||| ||||| || || ||||||||||| ||| |||| ||||||| |||| Sbjct: 124028 agtctgcaagacttggtaaccacatatctgttgctagcactaatagttcacaaggattgg 124087 Query: 712 ctacatc 718 |||||| Sbjct: 124088 gtacatc 124094 Score = 159 bits (80), Expect = 6e-35 Identities = 155/180 (86%) Strand = Plus / Plus Query: 295 ttgcagttaaagaactacagaagattaattccttcaaatcaccgcgggataagcttctct 354 ||||||||||||| | || ||||||||||||||||||||||| || || |||||| | Sbjct: 122694 ttgcagttaaagagttgcaaaagattaattccttcaaatcaccacgagaaaagcttagtt 122753 Query: 355 gtatgatgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatg 414 | || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 122754 gcatcatgagctgttgccaagtcatcaataacttgctgctaaatgtgtcaatgtcaaatg 122813 Query: 415 accgaacaccatctggcgctgatgaattccttcccattctcatttatattaccatcaagg 474 | ||||||| ||| || |||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct: 122814 atcgaacactatcaggggctgatgattttcttcctattcttatttacattacaatcaagg 122873 Score = 99.6 bits (50), Expect = 5e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 121813 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 121872 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgagg 123 || |||||| | |||||| | ||||| |||||| |||||||||||| Sbjct: 121873 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgagg 121918 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 124414 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 124473 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 124474 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 124533 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 124534 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 124582 Score = 60.0 bits (30), Expect = 4e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacataccca 264 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| Sbjct: 122084 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacataccca 122141 Score = 42.1 bits (21), Expect = 9.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 121 aggggctcgagaagtacatcatgaccaagctgttcga 157 ||||||| |||||||| ||||||||||| ||||||| Sbjct: 121998 aggggcttgagaagtatatcatgaccaaattgttcga 122034
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 236 bits (119), Expect = 3e-58 Identities = 215/247 (87%) Strand = Plus / Plus Query: 472 aggccaatcctcctcagctgcactcaaatctaaagtttgttcagctcttcagaagagaaa 531 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1708 aggccaatcctcctcagttgcactcaaatctaaagtttattcagctcttcagaagagaaa 1767 Query: 532 ctaagcttgtttcggaagtcgaatactatctcacaaacctcatttcagcaaagatgttta 591 | | |||| | || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1768 caaggcttatctctgaagtcgaatactatctcacgaacctcatttcagcaaagatgttta 1827 Query: 592 taattaatgttaatggccagtcgctatcaatggaagaaactgagtttcagaagcatatgg 651 |||| ||||||||||| || || || || ||||| |||| || ||| |||| ||||||| Sbjct: 1828 taatgaatgttaatggacactcactgtccatggaggaaagtgtgttccagacacatatgg 1887 Query: 652 aatctgcaaaactaggtaatcaaatgtctgttgctagtcctagtagtccacaagggttgg 711 | ||||||| ||| ||||| || || ||||||||||| ||| |||| ||||||| |||| Sbjct: 1888 agtctgcaagacttggtaaccacatatctgttgctagcactaatagttcacaaggattgg 1947 Query: 712 ctacatc 718 |||||| Sbjct: 1948 gtacatc 1954 Score = 159 bits (80), Expect = 6e-35 Identities = 155/180 (86%) Strand = Plus / Plus Query: 295 ttgcagttaaagaactacagaagattaattccttcaaatcaccgcgggataagcttctct 354 ||||||||||||| | || ||||||||||||||||||||||| || || |||||| | Sbjct: 554 ttgcagttaaagagttgcaaaagattaattccttcaaatcaccacgagaaaagcttagtt 613 Query: 355 gtatgatgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatg 414 | || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 614 gcatcatgagctgttgccaagtcatcaataacttgctgctaaatgtgtcaatgtcaaatg 673 Query: 415 accgaacaccatctggcgctgatgaattccttcccattctcatttatattaccatcaagg 474 | ||||||| ||| || |||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct: 674 atcgaacactatcaggggctgatgattttcttcctattcttatttacattacaatcaagg 733 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 2274 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 2333 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 2334 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 2393 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 2394 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 2442
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 236 bits (119), Expect = 3e-58 Identities = 215/247 (87%) Strand = Plus / Plus Query: 472 aggccaatcctcctcagctgcactcaaatctaaagtttgttcagctcttcagaagagaaa 531 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 35213019 aggccaatcctcctcagttgcactcaaatctaaagtttattcagctcttcagaagagaaa 35213078 Query: 532 ctaagcttgtttcggaagtcgaatactatctcacaaacctcatttcagcaaagatgttta 591 | | |||| | || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 35213079 caaggcttatctctgaagtcgaatactatctcacgaacctcatttcagcaaagatgttta 35213138 Query: 592 taattaatgttaatggccagtcgctatcaatggaagaaactgagtttcagaagcatatgg 651 |||| ||||||||||| || || || || ||||| |||| || ||| |||| ||||||| Sbjct: 35213139 taatgaatgttaatggacactcactgtccatggaggaaagtgtgttccagacacatatgg 35213198 Query: 652 aatctgcaaaactaggtaatcaaatgtctgttgctagtcctagtagtccacaagggttgg 711 | ||||||| ||| ||||| || || ||||||||||| ||| |||| ||||||| |||| Sbjct: 35213199 agtctgcaagacttggtaaccacatatctgttgctagcactaatagttcacaaggattgg 35213258 Query: 712 ctacatc 718 |||||| Sbjct: 35213259 gtacatc 35213265 Score = 159 bits (80), Expect = 6e-35 Identities = 155/180 (86%) Strand = Plus / Plus Query: 295 ttgcagttaaagaactacagaagattaattccttcaaatcaccgcgggataagcttctct 354 ||||||||||||| | || ||||||||||||||||||||||| || || |||||| | Sbjct: 35211865 ttgcagttaaagagttgcaaaagattaattccttcaaatcaccacgagaaaagcttagtt 35211924 Query: 355 gtatgatgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatg 414 | || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 35211925 gcatcatgagctgttgccaagtcatcaataacttgctgctaaatgtgtcaatgtcaaatg 35211984 Query: 415 accgaacaccatctggcgctgatgaattccttcccattctcatttatattaccatcaagg 474 | ||||||| ||| || |||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct: 35211985 atcgaacactatcaggggctgatgattttcttcctattcttatttacattacaatcaagg 35212044 Score = 99.6 bits (50), Expect = 5e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 35210984 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 35211043 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgagg 123 || |||||| | |||||| | ||||| |||||| |||||||||||| Sbjct: 35211044 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgagg 35211089 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 35213585 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 35213644 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 35213645 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 35213704 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 35213705 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 35213753 Score = 60.0 bits (30), Expect = 4e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacataccca 264 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| Sbjct: 35211255 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacataccca 35211312 Score = 50.1 bits (25), Expect = 0.040 Identities = 31/33 (93%) Strand = Plus / Plus Query: 2456 ttttaagtttgatcatatttgtagagaaacata 2488 |||||||||||||||||||| |||| ||||||| Sbjct: 23704880 ttttaagtttgatcatatttatagaaaaacata 23704912 Score = 42.1 bits (21), Expect = 9.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 121 aggggctcgagaagtacatcatgaccaagctgttcga 157 ||||||| |||||||| ||||||||||| ||||||| Sbjct: 35211169 aggggcttgagaagtatatcatgaccaaattgttcga 35211205
>dbj|AK065755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036A18, full insert sequence Length = 2625 Score = 236 bits (119), Expect = 3e-58 Identities = 215/247 (87%) Strand = Plus / Plus Query: 472 aggccaatcctcctcagctgcactcaaatctaaagtttgttcagctcttcagaagagaaa 531 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2265 aggccaatcctcctcagttgcactcaaatctaaagtttattcagctcttcagaagagaaa 2324 Query: 532 ctaagcttgtttcggaagtcgaatactatctcacaaacctcatttcagcaaagatgttta 591 | | |||| | || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2325 caaggcttatctctgaagtcgaatactatctcacgaacctcatttcagcaaagatgttta 2384 Query: 592 taattaatgttaatggccagtcgctatcaatggaagaaactgagtttcagaagcatatgg 651 |||| ||||||||||| || || || || ||||| |||| || ||| |||| ||||||| Sbjct: 2385 taatgaatgttaatggacactcactgtccatggaggaaagtgtgttccagacacatatgg 2444 Query: 652 aatctgcaaaactaggtaatcaaatgtctgttgctagtcctagtagtccacaagggttgg 711 | ||||||| ||| ||||| || || ||||||||||| ||| |||| ||||||| |||| Sbjct: 2445 agtctgcaagacttggtaaccacatatctgttgctagcactaatagttcacaaggattgg 2504 Query: 712 ctacatc 718 |||||| Sbjct: 2505 gtacatc 2511 Score = 159 bits (80), Expect = 6e-35 Identities = 155/180 (86%) Strand = Plus / Plus Query: 295 ttgcagttaaagaactacagaagattaattccttcaaatcaccgcgggataagcttctct 354 ||||||||||||| | || ||||||||||||||||||||||| || || |||||| | Sbjct: 1111 ttgcagttaaagagttgcaaaagattaattccttcaaatcaccacgagaaaagcttagtt 1170 Query: 355 gtatgatgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatg 414 | || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 1171 gcatcatgagctgttgccaagtcatcaataacttgctgctaaatgtgtcaatgtcaaatg 1230 Query: 415 accgaacaccatctggcgctgatgaattccttcccattctcatttatattaccatcaagg 474 | ||||||| ||| || |||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct: 1231 atcgaacactatcaggggctgatgattttcttcctattcttatttacattacaatcaagg 1290 Score = 99.6 bits (50), Expect = 5e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 231 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 290 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgagg 123 || |||||| | |||||| | ||||| |||||| |||||||||||| Sbjct: 291 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgagg 336 Score = 60.0 bits (30), Expect = 4e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacataccca 264 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| Sbjct: 502 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacataccca 559 Score = 42.1 bits (21), Expect = 9.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 121 aggggctcgagaagtacatcatgaccaagctgttcga 157 ||||||| |||||||| ||||||||||| ||||||| Sbjct: 416 aggggcttgagaagtatatcatgaccaaattgttcga 452
>dbj|AK067436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013101P10, full insert sequence Length = 1954 Score = 159 bits (80), Expect = 6e-35 Identities = 155/180 (86%) Strand = Plus / Plus Query: 295 ttgcagttaaagaactacagaagattaattccttcaaatcaccgcgggataagcttctct 354 ||||||||||||| | || ||||||||||||||||||||||| || || |||||| | Sbjct: 999 ttgcagttaaagagttgcaaaagattaattccttcaaatcaccacgagaaaagcttagtt 1058 Query: 355 gtatgatgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatg 414 | || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct: 1059 gcatcatgagctgttgccaagtcatcaataacttgctgctaaatgtgtcaatgtcaaatg 1118 Query: 415 accgaacaccatctggcgctgatgaattccttcccattctcatttatattaccatcaagg 474 | ||||||| ||| || |||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct: 1119 atcgaacactatcaggggctgatgattttcttcctattcttatttacattacaatcaagg 1178 Score = 135 bits (68), Expect = 9e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 200 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 259 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgaggggctcgagaagtac 137 || |||||| | |||||| | ||||| |||||| |||||||||||||||| |||||||| Sbjct: 260 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgaggggcttgagaagtat 319 Query: 138 atcatgaccaagctgttcga 157 ||||||||||| ||||||| Sbjct: 320 atcatgaccaaattgttcga 339 Score = 60.0 bits (30), Expect = 4e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacataccca 264 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| Sbjct: 389 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacataccca 446
>emb|CT832884.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013J10, full insert sequence Length = 728 Score = 99.6 bits (50), Expect = 5e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 18 gacggcgccagggtccaggccttcttcgcggagatggaggcggccatccgggggcacccg 77 ||||||| |||||||||| |||||||||||||||||||| | |||||| ||| |||||| Sbjct: 198 gacggcggcagggtccagaccttcttcgcggagatggagaccgccatcagggaccacccg 257 Query: 78 ctatgggccgacgccacccaccaggagatcgaccacgcgctcgagg 123 || |||||| | |||||| | ||||| |||||| |||||||||||| Sbjct: 258 ctttgggccaatgccaccaatcaggaaatcgacaacgcgctcgagg 303 Score = 60.0 bits (30), Expect = 4e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 207 tcggacaagatcggcctcctgcagcgctttgtcaggcctcatcacctcgacataccca 264 ||||| ||||| || ||| |||||| ||||||||||||||||||| | |||||||||| Sbjct: 469 tcggagaagattggtctcttgcagcactttgtcaggcctcatcacttggacataccca 526 Score = 42.1 bits (21), Expect = 9.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 121 aggggctcgagaagtacatcatgaccaagctgttcga 157 ||||||| |||||||| ||||||||||| ||||||| Sbjct: 383 aggggcttgagaagtatatcatgaccaaattgttcga 419
>emb|CT832442.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA056F13, full insert sequence Length = 579 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 202 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 261 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 262 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 321 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 322 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 370
>dbj|AK062057.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C06, full insert sequence Length = 925 Score = 97.6 bits (49), Expect = 2e-16 Identities = 139/169 (82%) Strand = Plus / Plus Query: 759 aaattccctttcatggactcagaaatcgaaaatttgacgccagaggaactcaagcagttg 818 |||||||| ||||||||||| |||| |||| ||||| |||| |||| ||||||| ||| Sbjct: 361 aaattcccattcatggactctgaaactgaaagcttgactccagcggaagtcaagcaattg 420 Query: 819 catggactctacaggaagacagtgaccaaatatacactgttgtctaaagccttgagaaag 878 || | ||||||||| | ||| |||| |||||| ||| |||||||||| || |||||| Sbjct: 421 cacgagctctacaggcaagtagtcaccagatatacgctgctgtctaaagctttaagaaag 480 Query: 879 ttatccatagatgaggatcagctgcttgcatcagtagatgattcatgaa 927 ||||| |||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 481 ttatcggtagatgaggatcagctccttaattcagtagatgattgatgaa 529
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 79.8 bits (40), Expect = 4e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 360 atgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatga 415 |||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| Sbjct: 11074165 atgagctgttgccaagtcatcaataacttgctgctagatgtgtcaatgtcaaatga 11074110
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 79.8 bits (40), Expect = 4e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 360 atgagctgttgccaagtcatcaataacttgctgctaaacgtgtccatgtcgaatga 415 |||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| Sbjct: 103047 atgagctgttgccaagtcatcaataacttgctgctagatgtgtcaatgtcaaatga 102992
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 65.9 bits (33), Expect = 7e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 363 agctgttgccaagtcatcaataacttgctgcta 395 ||||||||||||||||||||||||||||||||| Sbjct: 28328031 agctgttgccaagtcatcaataacttgctgcta 28328063 Score = 44.1 bits (22), Expect = 2.5 Identities = 31/34 (91%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaacata 2488 |||||||||||||||| |||| |||| ||||||| Sbjct: 21936111 cttttaagtttgatcaaatttatagaaaaacata 21936144
>emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence Length = 150957 Score = 65.9 bits (33), Expect = 7e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 363 agctgttgccaagtcatcaataacttgctgcta 395 ||||||||||||||||||||||||||||||||| Sbjct: 120339 agctgttgccaagtcatcaataacttgctgcta 120371
>gb|DQ537335.1| Triticum aestivum clones BAC 1031P08; BAC 754K10; BAC 1344C16, complete sequence Length = 292102 Score = 63.9 bits (32), Expect = 3e-06 Identities = 44/48 (91%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||||| ||||||||||||| ||| ||| |||||||||||||| Sbjct: 266048 aagtttgatcaaatttgtagagaaatatatcaatattcataatatcaa 266001
>gb|M22208.2|WHTGLUTA Triticum aestivum HMW glutenin subunit Ax2* gene, complete cds Length = 6837 Score = 63.9 bits (32), Expect = 3e-06 Identities = 44/48 (91%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||||| ||||||||||||| ||| ||| |||||||||||||| Sbjct: 583 aagtttgatcaaatttgtagagaaatatatcaatattcataatatcaa 536
>gb|DQ533690.1| Triticum aestivum high molecular weight glutenin subunit (GluA1) gene, GluA1-2.. allele, promoter region and complete cds Length = 4648 Score = 56.0 bits (28), Expect = 6e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||||| ||||||||||||| ||| ||| || ||||||||||| Sbjct: 382 aagtttgatcaaatttgtagagaaatatatcaatatccataatatcaa 335
>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds Length = 158797 Score = 52.0 bits (26), Expect = 0.010 Identities = 47/54 (87%) Strand = Plus / Plus Query: 3 cccagcgcggaggcggacggcgccagggtccaggccttcttcgcggagatggag 56 |||| ||| |||| ||||||| || ||||||||||||| |||||||||||||| Sbjct: 152008 cccaacgccgaggaggacggcagcaaggtccaggccttcctcgcggagatggag 152061
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 50.1 bits (25), Expect = 0.040 Identities = 31/33 (93%) Strand = Plus / Plus Query: 2456 ttttaagtttgatcatatttgtagagaaacata 2488 |||||||||||||||||||| |||| ||||||| Sbjct: 43906 ttttaagtttgatcatatttatagaaaaacata 43938
>dbj|D38111.1|WHTTFH1B Wheat gene for transcription factor HBP-1a(17), complete cds Length = 7321 Score = 50.1 bits (25), Expect = 0.040 Identities = 46/53 (86%) Strand = Plus / Minus Query: 2457 tttaagtttgatcatatttgtagagaaacataacaaaattcataatatcaaat 2509 |||||||||||||| |||| | ||||| ||| ||||||||||| |||||||| Sbjct: 1221 tttaagtttgatcaaatttagaaagaaatatatcaaaattcatagtatcaaat 1169
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 48.1 bits (24), Expect = 0.16 Identities = 42/48 (87%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||||| ||||||| ||||| ||| ||| || ||||||||||| Sbjct: 247600 aagtttgatcaaatttgtaaagaaatatatcaatatccataatatcaa 247553
>gb|DQ537337.1| Triticum aestivum clone BAC 897M20, complete sequence Length = 152010 Score = 46.1 bits (23), Expect = 0.62 Identities = 47/55 (85%) Strand = Plus / Minus Query: 2453 accttttaagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||| ||||||| ||||||||||||| ||| || || ||||||||||| Sbjct: 79337 accttttaaagttgatcaaatttgtagagaaatatacaaatatccataatatcaa 79283
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 46.1 bits (23), Expect = 0.62 Identities = 47/55 (85%) Strand = Plus / Minus Query: 2453 accttttaagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||| ||||||| ||||||||||||| ||| || || ||||||||||| Sbjct: 59374 accttttaaagttgatcaaatttgtagagaaatatacaaatatccataatatcaa 59320
>gb|AC113192.3| Homo sapiens chromosome 11, clone RP11-646J21, complete sequence Length = 148308 Score = 46.1 bits (23), Expect = 0.62 Identities = 32/35 (91%) Strand = Plus / Plus Query: 2390 aatatcaaatgtagagaaacataacaaaaaatata 2424 ||||||||||||| ||| |||||||||||| |||| Sbjct: 25274 aatatcaaatgtaaagacacataacaaaaagtata 25308
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 46.1 bits (23), Expect = 0.62 Identities = 35/39 (89%) Strand = Plus / Minus Query: 2454 ccttttaagtttgatcatatttgtagagaaacataacaa 2492 ||||||||||||||||| |||||||| ||| ||||||| Sbjct: 18486674 ccttttaagtttgatcaagtttgtagaaaaatataacaa 18486636 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2252 gaggcagtaggagaagcggtc 2272 ||||||||||||||||||||| Sbjct: 20872262 gaggcagtaggagaagcggtc 20872242
>gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, complete sequence Length = 181405 Score = 46.1 bits (23), Expect = 0.62 Identities = 23/23 (100%) Strand = Plus / Plus Query: 130 agaagtacatcatgaccaagctg 152 ||||||||||||||||||||||| Sbjct: 19139 agaagtacatcatgaccaagctg 19161
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 46.1 bits (23), Expect = 0.62 Identities = 35/39 (89%) Strand = Plus / Minus Query: 2454 ccttttaagtttgatcatatttgtagagaaacataacaa 2492 ||||||||||||||||| |||||||| ||| ||||||| Sbjct: 15430 ccttttaagtttgatcaagtttgtagaaaaatataacaa 15392
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_B11 Length = 102824 Score = 46.1 bits (23), Expect = 0.62 Identities = 35/39 (89%) Strand = Plus / Minus Query: 2454 ccttttaagtttgatcatatttgtagagaaacataacaa 2492 ||||||||||||||||| |||||||| ||| ||||||| Sbjct: 78522 ccttttaagtttgatcaagtttgtagaaaaatataacaa 78484
>gb|AC132216.7| Homo sapiens chromosome 11, clone RP13-786C16, complete sequence Length = 174373 Score = 46.1 bits (23), Expect = 0.62 Identities = 32/35 (91%) Strand = Plus / Minus Query: 2390 aatatcaaatgtagagaaacataacaaaaaatata 2424 ||||||||||||| ||| |||||||||||| |||| Sbjct: 5074 aatatcaaatgtaaagacacataacaaaaagtata 5040
>emb|Y08359.1|RPERS1 R.palustris mRNA for ethylene response sensor protein Length = 2421 Score = 46.1 bits (23), Expect = 0.62 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1117 ttccaggaggtaccaaacaatga 1139 ||||||||||||||||||||||| Sbjct: 190 ttccaggaggtaccaaacaatga 168
>emb|X12928.3|TAGL1D1B Triticum aestivum Glu-1D-1d gene for high molecular weight glutenin subunit 5 Length = 8435 Score = 46.1 bits (23), Expect = 0.62 Identities = 47/55 (85%) Strand = Plus / Minus Query: 2453 accttttaagtttgatcatatttgtagagaaacataacaaaattcataatatcaa 2507 ||||||||| ||||||| ||||||||||||| ||| || || ||||||||||| Sbjct: 2055 accttttaaagttgatcaaatttgtagagaaatatacaaatatccataatatcaa 2001
>gb|U63291.1|RPU63291 Rumex palustris ethylene response sensor (RP-ERS1) mRNA, complete cds Length = 2421 Score = 46.1 bits (23), Expect = 0.62 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1117 ttccaggaggtaccaaacaatga 1139 ||||||||||||||||||||||| Sbjct: 190 ttccaggaggtaccaaacaatga 168
>gb|AC122214.4| Mus musculus BAC clone RP23-104J10 from chromosome 7, complete sequence Length = 176054 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1871 gctgtggaagcagacgtggtac 1892 |||||||||||||||||||||| Sbjct: 2387 gctgtggaagcagacgtggtac 2408
>gb|AC099930.11| Mus musculus chromosome 7, clone RP23-17C12, complete sequence Length = 224617 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1871 gctgtggaagcagacgtggtac 1892 |||||||||||||||||||||| Sbjct: 176256 gctgtggaagcagacgtggtac 176277
>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence Length = 197992 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 443 ccttcccattctcatttatatt 464 |||||||||||||||||||||| Sbjct: 196610 ccttcccattctcatttatatt 196631
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaa 2484 |||||||||||||||| |||||||||||| Sbjct: 4669452 cttttaagtttgatcaagtttgtagagaaa 4669481
>gb|AC105415.2| Homo sapiens BAC clone RP11-265O12 from 4, complete sequence Length = 185848 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2453 accttttaagtttgatcatatt 2474 |||||||||||||||||||||| Sbjct: 89317 accttttaagtttgatcatatt 89338
>gb|AC011744.8| Homo sapiens BAC clone RP11-324I10 from 4, complete sequence Length = 191596 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2453 accttttaagtttgatcatatt 2474 |||||||||||||||||||||| Sbjct: 130424 accttttaagtttgatcatatt 130445
>gb|AC040161.5| Homo sapiens chromosome 16 clone CTC-420A11, complete sequence Length = 155279 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 443 ccttcccattctcatttatatt 464 |||||||||||||||||||||| Sbjct: 154846 ccttcccattctcatttatatt 154825
>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete sequence Length = 121130 Score = 44.1 bits (22), Expect = 2.5 Identities = 31/34 (91%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaacata 2488 |||||||||||||||| |||| |||| ||||||| Sbjct: 2033 cttttaagtttgatcaaatttatagaaaaacata 2066
>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090D06 Length = 174500 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaa 2484 |||||||||||||||| |||||||||||| Sbjct: 156816 cttttaagtttgatcaagtttgtagagaaa 156845
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaa 2484 |||||||||||||||| |||||||||||| Sbjct: 32051 cttttaagtttgatcaagtttgtagagaaa 32080
>gb|AC096554.1| Homo sapiens BAC clone RP11-76I14 from 2, complete sequence Length = 144683 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2404 agaaacataacaaaaaatatataatg 2429 ||||||| |||||||||||||||||| Sbjct: 129623 agaaacagaacaaaaaatatataatg 129648
>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20, complete sequence Length = 99855 Score = 44.1 bits (22), Expect = 2.5 Identities = 31/34 (91%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaacata 2488 |||||||||||||||| |||| |||| ||||||| Sbjct: 8682 cttttaagtttgatcaaatttatagaaaaacata 8715
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 44.1 bits (22), Expect = 2.5 Identities = 31/34 (91%) Strand = Plus / Plus Query: 2455 cttttaagtttgatcatatttgtagagaaacata 2488 |||||||||||||||| |||| |||| ||||||| Sbjct: 120812 cttttaagtttgatcaaatttatagaaaaacata 120845
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1027 caagacctggagccgcattcat 1048 |||||||||||||||||||||| Sbjct: 2111283 caagacctggagccgcattcat 2111262
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2396 aaatgtagagaaacataacaaaaaat 2421 ||||||||||||| |||||||||||| Sbjct: 1966112 aaatgtagagaaatataacaaaaaat 1966087
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1942 cggcctgcaccaggaggtcgtacgc 1966 ||||||||||||| ||||||||||| Sbjct: 4931417 cggcctgcaccagcaggtcgtacgc 4931441
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2406 aaacataacaaaaaatatata 2426 ||||||||||||||||||||| Sbjct: 3905468 aaacataacaaaaaatatata 3905448
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1141 aaacaaatctattatcacctg 1161 ||||||||||||||||||||| Sbjct: 5861856 aaacaaatctattatcacctg 5861836
>gb|DQ537336.1| Triticum aestivum clones BAC 1289J04; BAC 1001P20, complete sequence Length = 206063 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaa 2484 ||||||||||| ||||||||||||| Sbjct: 200206 aagtttgatcaaatttgtagagaaa 200182
>dbj|AB216591.1| Equus caballus DNA, microsatellite TKY2648 Length = 302 Score = 42.1 bits (21), Expect = 9.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 964 ttgaacaaaaacaaggcaggtggaggaga 992 |||| |||||||||||||| ||||||||| Sbjct: 150 ttgagcaaaaacaaggcagctggaggaga 178
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2197 acacgtcggcgccgaaccggaggaa 2221 |||||||||||||||||||| |||| Sbjct: 1835248 acacgtcggcgccgaaccggcggaa 1835224
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaa 2484 ||||||||||| ||||||||||||| Sbjct: 181247 aagtttgatcaaatttgtagagaaa 181223
>gb|U42842.1| Caenorhabditis elegans cosmid EGAP2, complete sequence Length = 6757 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 959 accgtttgaacaaaaacaagg 979 ||||||||||||||||||||| Sbjct: 6291 accgtttgaacaaaaacaagg 6311
>gb|AC129220.3| Mus musculus BAC clone RP24-475J22 from chromosome 5, complete sequence Length = 140359 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2416 aaaaatatataatgtattaca 2436 ||||||||||||||||||||| Sbjct: 95564 aaaaatatataatgtattaca 95584
>gb|AC116842.6| Mus musculus, clone RP24-390P7, complete sequence Length = 132907 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2499 taatatcaaatctgcatgatc 2519 ||||||||||||||||||||| Sbjct: 58969 taatatcaaatctgcatgatc 58989
>gb|DQ119142.1| Triticum aestivum HMW glutenin x-type subunit Bx7 precursor (Glu-B1al) gene, complete cds Length = 4392 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaa 2484 ||||||||||| ||||||||||||| Sbjct: 366 aagtttgatcaaatttgtagagaaa 342
>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete sequence Length = 400029 Score = 42.1 bits (21), Expect = 9.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1084 ctctttggaaacaatatcaaaattcaaga 1112 ||||||| ||||||| ||||||||||||| Sbjct: 306041 ctctttgtaaacaatgtcaaaattcaaga 306013
>ref|XM_754005.1| Ustilago maydis 521 hypothetical protein (UM02951.1) partial mRNA Length = 3756 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2199 acgtcggcgccgaaccggaggaagc 2223 |||||||||||||||| |||||||| Sbjct: 2374 acgtcggcgccgaacctgaggaagc 2398
>emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chromosome 14, complete sequence Length = 209623 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2499 taatatcaaatctgcatgatc 2519 ||||||||||||||||||||| Sbjct: 198031 taatatcaaatctgcatgatc 198011
>emb|X13927.2|TAGLB11B Triticum aestivum Glu-B1-1b gene for HMW glutenin subunit Length = 20425 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2460 aagtttgatcatatttgtagagaaa 2484 ||||||||||| ||||||||||||| Sbjct: 14568 aagtttgatcaaatttgtagagaaa 14544
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2456 ttttaagtttgatcatatttgtaga 2480 ||||||||||||||| ||||||||| Sbjct: 14604183 ttttaagtttgatcaaatttgtaga 14604207
>gb|AC097492.6| Homo sapiens BAC clone RP11-264A4 from 4, complete sequence Length = 142890 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2463 tttgatcatatttgtagagaaacat 2487 ||||||||||||| ||||||||||| Sbjct: 66018 tttgatcatatttttagagaaacat 66042
>emb|AL450423.9| Human DNA sequence from clone RP11-190J12 on chromosome 13, complete sequence Length = 116969 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2478 agagaaacataacaaaattca 2498 ||||||||||||||||||||| Sbjct: 105841 agagaaacataacaaaattca 105821
>gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, complete sequence Length = 205015 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1631 gcctgccatgtcgtcatggca 1651 ||||||||||||||||||||| Sbjct: 53444 gcctgccatgtcgtcatggca 53424
>gb|AC084838.7| Homo sapiens chromosome 8, clone CTD-2023J5, complete sequence Length = 183693 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 gcttctctgtatgatgagctgttgc 371 ||||||||||| ||||||||||||| Sbjct: 32941 gcttctctgtaagatgagctgttgc 32965
>gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 235639 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1631 gcctgccatgtcgtcatggca 1651 ||||||||||||||||||||| Sbjct: 27983 gcctgccatgtcgtcatggca 27963
>gb|AC099011.1| Drosophila melanogaster, chromosome 2L, region 24C-24D, BAC clone BACR22M14, complete sequence Length = 173380 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2406 aaacataacaaaaaatatata 2426 ||||||||||||||||||||| Sbjct: 38776 aaacataacaaaaaatatata 38756
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cgcggccgacgccgaggtctcggac 212 ||||||||||||| ||||||||||| Sbjct: 83405 cgcggccgacgccaaggtctcggac 83429
>gb|BC036963.1| Mus musculus brain-specific angiogenesis inhibitor 1, mRNA (cDNA clone IMAGE:4505539), with apparent retained intron Length = 2421 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1662 gcgaagaggatcctgcccgct 1682 ||||||||||||||||||||| Sbjct: 585 gcgaagaggatcctgcccgct 565
>gb|BC042211.1| Mus musculus lanosterol synthase, mRNA (cDNA clone IMAGE:4504361), with apparent retained intron Length = 4900 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1631 gcctgccatgtcgtcatggca 1651 ||||||||||||||||||||| Sbjct: 571 gcctgccatgtcgtcatggca 591
>gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197426 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1631 gcctgccatgtcgtcatggca 1651 ||||||||||||||||||||| Sbjct: 66330 gcctgccatgtcgtcatggca 66350
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2252 gaggcagtaggagaagcggtc 2272 ||||||||||||||||||||| Sbjct: 83052 gaggcagtaggagaagcggtc 83032
>gb|AC009183.5|AC009183 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR39F04, complete sequence Length = 192055 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1141 aaacaaatctattatcacctg 1161 ||||||||||||||||||||| Sbjct: 57567 aaacaaatctattatcacctg 57547
>gb|AC144896.3| Homo sapiens BAC clone RP11-1129K24 from 2, complete sequence Length = 161471 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1610 gaaagggaaagttcaattctg 1630 ||||||||||||||||||||| Sbjct: 69923 gaaagggaaagttcaattctg 69903
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 gcggagatggaggcggccatccggg 69 |||| |||||||||||||||||||| Sbjct: 4626745 gcggtgatggaggcggccatccggg 4626769
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 acgccgcggccgacgccgagg 204 ||||||||||||||||||||| Sbjct: 8859811 acgccgcggccgacgccgagg 8859831
>emb|BX897662.16| Zebrafish DNA sequence from clone DKEYP-118G6, complete sequence Length = 171928 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2406 aaacataacaaaaaatatata 2426 ||||||||||||||||||||| Sbjct: 14412 aaacataacaaaaaatatata 14432
>dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1131_E05 Length = 122216 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2252 gaggcagtaggagaagcggtc 2272 ||||||||||||||||||||| Sbjct: 177 gaggcagtaggagaagcggtc 157
>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0075E08 Length = 130947 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2456 ttttaagtttgatcatatttgtaga 2480 ||||||||||||||| ||||||||| Sbjct: 108199 ttttaagtttgatcaaatttgtaga 108223
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 42.1 bits (21), Expect = 9.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2456 ttttaagtttgatcatatttgtaga 2480 |||||||||||||||||||| |||| Sbjct: 129772 ttttaagtttgatcatatttataga 129748
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgtcgtcgccggaggacgccg 189 ||||||||||||||||||||| Sbjct: 206850 cgtcgtcgccggaggacgccg 206830
>gb|AC005732.1|AC005732 Drosophila melanogaster DNA sequence (P1s DS03998 (D223), DS01595 (D161), and DS00065 (D263)), complete sequence Length = 127039 Score = 42.1 bits (21), Expect = 9.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2406 aaacataacaaaaaatatata 2426 ||||||||||||||||||||| Sbjct: 15330 aaacataacaaaaaatatata 15350
>gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, complete sequence Length = 172271 Score = 42.1 bits (21), Expect = 9.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1084 ctctttggaaacaatatcaaaattcaaga 1112 ||||||| ||||||| ||||||||||||| Sbjct: 26481 ctctttgtaaacaatgtcaaaattcaaga 26453 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 450,651,606 Number of extensions: 25765047 Number of successful extensions: 147682 Number of sequences better than 10.0: 85 Number of HSP's gapped: 147682 Number of HSP's successfully gapped: 114 Length of query: 2535 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2512 Effective length of database: 18,503,978,556 Effective search space: 46481994132672 Effective search space used: 46481994132672 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)