ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf134k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q6INV8:Z652B_XENLA Zinc finger protein 652-B - Xenopus laevis (A... 32 4.8
2Q9V853:SMUF1_DROME E3 ubiquitin-protein ligase Smurf1 - Drosophi... 32 4.8
3Q9NZ56:FMN2_HUMAN Formin-2 - Homo sapiens (Human) 32 4.8
4Q1IX66:RS12_DEIGD 30S ribosomal protein S12 - Deinococcus geothe... 32 4.8
5Q5JVS0:HABP4_HUMAN Intracellular hyaluronan-binding protein 4 - ... 31 8.2

>Q6INV8:Z652B_XENLA Zinc finger protein 652-B - Xenopus laevis (African clawed frog)|
          Length = 602
 Score = 31.6 bits (70), Expect = 4.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 525 SSHRQETLPSALPGETS*QGGEQSS-LRHREAVGRHGSLWDGG----GRGGEGPVTKRKK 689
           S   +E  P  L G+T+ Q G Q     + + VG  G++        G+GGE P  K+K 
Sbjct: 161 SHEDEENNPLPLDGQTNMQHGNQDQKTENSDMVGGDGTIPANSTKEQGKGGEAPKRKKKP 220

Query: 690 DSPT 701
            SP+
Sbjct: 221 KSPS 224



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>Q9V853:SMUF1_DROME E3 ubiquitin-protein ligase Smurf1 - Drosophila melanogaster (Fruit|
           fly)
          Length = 1061

 Score = 31.6 bits (70), Expect = 4.8
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +3

Query: 552 SALPGE-----TS*QGGEQSSLRHREAVG-RHGSLWDGGGRGGEG 668
           +A PG+     +S Q GE+SS R R + G R+G    GGG GG G
Sbjct: 450 AATPGQRSQRRSSRQQGEESSTRRRSSRGTRNGGTSGGGGGGGSG 494



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>Q9NZ56:FMN2_HUMAN Formin-2 - Homo sapiens (Human)|
          Length = 1865

 Score = 31.6 bits (70), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 609 REAVGRHGSLWDGGGRGGEGPVTKRKKDS 695
           ++A+G+HG    GGG GGE    K K DS
Sbjct: 185 KKALGKHGKGGGGGGGGGESGKKKSKSDS 213



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>Q1IX66:RS12_DEIGD 30S ribosomal protein S12 - Deinococcus geothermalis (strain DSM|
           11300)
          Length = 134

 Score = 31.6 bits (70), Expect = 4.8
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 523 DLPIARRHSLQRFLEKR--RDRVVSKAPYGTGKPSEGMGASG 642
           DLP  R H ++  L+ +  +DR  S++ YGT KP  G  A+G
Sbjct: 89  DLPGVRYHIVRGSLDTQGVKDRNKSRSKYGTKKPKAGAAAAG 130



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>Q5JVS0:HABP4_HUMAN Intracellular hyaluronan-binding protein 4 - Homo sapiens (Human)|
          Length = 413

 Score = 30.8 bits (68), Expect = 8.2
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +1

Query: 535 ARRHSLQRFLEKRRDRVVSKAPYGTGKPSEGMGASGMEAVAEGKAQ*PKGRKIAP 699
           A R   Q+   KRRD   + A  G        GASG  A A G+ +  K RK  P
Sbjct: 45  AERRRQQQLQRKRRDEAAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLP 99


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 161,040,598
Number of extensions: 3565743
Number of successful extensions: 9955
Number of sequences better than 10.0: 5
Number of HSP's gapped: 9924
Number of HSP's successfully gapped: 5
Length of query: 311
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 198
Effective length of database: 69,691,104
Effective search space: 13798838592
Effective search space used: 13798838592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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