ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf134j05 |
|---|---|
| Clone Library Name | barley_pub |
>Q6TAW2:RMP42_MOUSE Putative ribosome-associated membrane protein RAMP4-2 - Mus| musculus (Mouse) Length = 65 Score = 55.1 bits (131), Expect = 1e-07 Identities = 26/52 (50%), Positives = 36/52 (69%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYPVGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T + YPVGP +L F+FVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64
>Q8N6R1:RMP42_HUMAN Putative ribosome-associated membrane protein RAMP4-2 - Homo| sapiens (Human) Length = 65 Score = 55.1 bits (131), Expect = 1e-07 Identities = 26/52 (50%), Positives = 36/52 (69%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYPVGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T + YPVGP +L F+FVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64
>Q3T073:RMP42_BOVIN Putative ribosome-associated membrane protein RAMP4-2 - Bos taurus| (Bovine) Length = 65 Score = 55.1 bits (131), Expect = 1e-07 Identities = 26/52 (50%), Positives = 36/52 (69%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYPVGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T + YPVGP +L F+FVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64
>Q5REZ1:RAMP4_PONPY Ribosome-attached membrane protein 4 - Pongo pygmaeus (Orangutan)| Length = 66 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKK-GNDYPVGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T+ G VGP +L FIFVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTSRNAPGEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65
>Q9R2C1:RAMP4_RAT Ribosome-attached membrane protein 4 - Rattus norvegicus (Rat)| Length = 66 Score = 45.8 bits (107), Expect = 7e-05 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYP-VGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T+ + VGP +L FIFVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65
>Q9Z1W5:RAMP4_MOUSE Ribosome-attached membrane protein 4 - Mus musculus (Mouse)| Length = 66 Score = 45.8 bits (107), Expect = 7e-05 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYP-VGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T+ + VGP +L FIFVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65
>Q9Y6X1:RAMP4_HUMAN Ribosome-attached membrane protein 4 - Homo sapiens (Human)| Length = 66 Score = 45.8 bits (107), Expect = 7e-05 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYP-VGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T+ + VGP +L FIFVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65
>Q3ZBR1:RAMP4_BOVIN Ribosome-attached membrane protein 4 - Bos taurus (Bovine)| Length = 66 Score = 45.8 bits (107), Expect = 7e-05 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +1 Query: 130 KFQKNITKRGSVPETTVKKGNDYP-VGPIVLGFFIFVVIGSSLFQIIRTASSG 285 K KNIT+RG+V +T+ + VGP +L FIFVV GS++FQII++ G Sbjct: 13 KHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65
>P07228:ITB1_CHICK Integrin beta-1 precursor - Gallus gallus (Chicken)| Length = 803 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/67 (23%), Positives = 31/67 (46%) Frame = +3 Query: 72 DTAQSQDDHFQAPC*QEDGKVPEEHHQEGFSA*NHCEEGE*LSCWTYSSWILHLCGHRII 251 +T + HF + GK+P+ H + S HC+E + CW Y ++ ++ G + Sbjct: 664 ETCSQECMHFNMTRVESRGKLPQPVHPDPLS---HCKEKDVGDCWFYFTYSVNSNGEASV 720 Query: 252 SVSDNQD 272 V + + Sbjct: 721 HVVETPE 727
>Q7VP66:CARA_HAEDU Carbamoyl-phosphate synthase small chain - Haemophilus ducreyi| Length = 389 Score = 29.6 bits (65), Expect = 4.9 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = -2 Query: 246 SDDHKDEESKNYRSNRIV--IPLLHSGFRH*TPLGDVLLE 133 ++D +E ++ Y S I+ +PLLHS FR + L D L++ Sbjct: 68 TNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQ 107
>Q84TX2:SCRL1_ORYSJ SCAR-like protein 1 - Oryza sativa subsp. japonica (Rice)| Length = 2097 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +3 Query: 9 NIKPKLPTGCTSSHSLPASLPDTAQS--QDDHFQAPC*QEDGKVPE 140 N K P G TS+H LP L S + D APC D KV E Sbjct: 1494 NDKTNEPDGATSTHVLPVELEQEVCSFPELDSLVAPCSLNDDKVCE 1539
>Q8WY36:BBX_HUMAN HMG box transcription factor BBX - Homo sapiens (Human)| Length = 941 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 142 SSGTLPSSCQQGAWKWSSWLWAVSGKLAGKEWELVQP 32 SSG SS +G W SW ++ SG K+++ +P Sbjct: 642 SSGKGNSSDHEGCWNEESWTFSQSGTSGSKKFKKTKP 678 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 79,080,360 Number of extensions: 1805611 Number of successful extensions: 4198 Number of sequences better than 10.0: 12 Number of HSP's gapped: 4191 Number of HSP's successfully gapped: 12 Length of query: 154 Length of database: 100,686,439 Length adjustment: 103 Effective length of query: 51 Effective length of database: 72,434,054 Effective search space: 3694136754 Effective search space used: 3694136754 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
