>O80934:Y2766_ARATH Protein At2g37660, chloroplast precursor - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 325
 Score = 86.7 bits (213), Expect = 3e-16
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
 Frame = +1

Query: 817  QVYEGDTRNADDLNPEMFEGVTHVICTTGTTAF------PSKR------WDGDNTPERVD 960
            +V+ GD R+   + P + EG+  ++  T           PSK       +D    PE+VD
Sbjct: 123  EVFIGDIRDTASIAPAV-EGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVD 181

Query: 961  WDGVRNFVSAMPQT-IKRLVLVSSIGVTKYNEIPWSIMNLFGVLKYKKMAEDFVRNSGIP 1137
            W G +N + A     +K++VLV S+G T  N    SI N   +L +K+ AE ++ +SGIP
Sbjct: 182  WIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNA-NILVWKRKAEQYLADSGIP 240

Query: 1138 FTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQGDKLVGEASRLV----VAEACIQ 1305
            +TIIR G L D                G  R + +G+ D+L+   +R +    VAE C+Q
Sbjct: 241  YTIIRAGGLQD--------------KDGGIRELLVGKDDELLETETRTIARADVAEVCVQ 286

Query: 1306 ALDIESTQGKIYEISSVKGEGPGSDQEKWKQLF 1404
            AL +E  + K  +++S K EG G+  + +K LF
Sbjct: 287  ALQLEEAKFKALDLAS-KPEGTGTPTKDFKALF 318

>Q94EG6:Y5224_ARATH Protein At5g02240 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 253

 Score = 82.8 bits (203), Expect = 4e-15
 Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 19/219 (8%)
 Frame = +1

Query: 820  VYEGDTRNADDLNPEMFEGVTHVICTTGTTAFPSKRWDGDNT--------------PERV 957
            V+ GD  +AD +NP  F+G+  ++  T  +A P  +   D T              PE+V
Sbjct: 52   VFIGDITDADSINPA-FQGIDALVILT--SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQV 108

Query: 958  DWDGVRNFVSAMPQT-IKRLVLVSSIGVTKYNEIPWSIMNLFGVLKYKKMAEDFVRNSGI 1134
            DW G +N + A     +K +V+V S+G T  +  P + +    +L +K+ AE ++ +SG 
Sbjct: 109  DWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH-PLNKLGNGNILVWKRKAEQYLADSGT 167

Query: 1135 PFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQGDKLVGEASRLV----VAEACI 1302
            P+TIIR G L D                G  R + +G+ D+L+   ++ V    VAE CI
Sbjct: 168  PYTIIRAGGLLD--------------KEGGVRELLVGKDDELLQTDTKTVPRADVAEVCI 213

Query: 1303 QALDIESTQGKIYEISSVKGEGPGSDQEKWKQLFAAAES 1419
            QAL  E  + K +++ S K EG  +  + +K LF+   S
Sbjct: 214  QALLFEEAKNKAFDLGS-KPEGTSTPTKDFKALFSQVTS 251

>Q8H124:Y2446_ARATH Protein At2g34460, chloroplast precursor - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 280

 Score = 68.6 bits (166), Expect = 8e-11
 Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 8/238 (3%)
 Frame = +1

Query: 727  LLSREIKTRLLLRNPGKAASLFGKQDESVLQVYEGD-TRNADDLNPEMFEGVTHVICTTG 903
            LLSR    +  +R+  KA + F  +D+  LQ+   D T   D L   + +    VIC TG
Sbjct: 66   LLSRGFAVKAGVRDVEKAKTSF--KDDPSLQIVRADVTEGPDKLAEVIGDDSQAVICATG 123

Query: 904  TTAFPSKRWDGDNTPERVDWDGVRNFVSAM-PQTIKRLVLVSSIGVT-----KYNEIPWS 1065
                  +      TP +VD  G  N V A   Q +++ VLVSSI V      +     + 
Sbjct: 124  F-----RPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYL 178

Query: 1066 IMNLFGV-LKYKKMAEDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEI 1242
             +NLFG+ L  K  AE +++ SGI +TI+RPG L + P T                 V  
Sbjct: 179  FLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTG--------------NVVME 224

Query: 1243 GQGDKLVGEASRLVVAEACIQALDIESTQGKIYEISSVKGEGPGSDQEKWKQLFAAAE 1416
             +     G  SR +VAE  ++AL  E +  K+ EI + + E P   +  +K LFA+ +
Sbjct: 225  PEDTLYEGSISRDLVAEVAVEALLQEESSFKVVEIVA-RAEAP---KRSYKDLFASVK 278

>P01738:TVA1_MOUSE T-cell receptor alpha chain V region PHDS58 precursor - Mus musculus|
            (Mouse)
          Length = 130

 Score = 35.4 bits (80), Expect = 0.73
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 1471 LLPSYGIHYSLRQSATSSIQQLQIAASISPGRSRVLRPSPN*SRI-FFLG*IQYPKLGYM 1295
            LLP  GIH+ LR +   S+ Q     ++S G S  LR   + S   +    +QYP+ G  
Sbjct: 5    LLPVLGIHFVLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQ 64

Query: 1294 LL 1289
            LL
Sbjct: 65   LL 66

>P39315:YTFG_ECOLI Uncharacterized oxidoreductase ytfG - Escherichia coli|
          Length = 286

 Score = 35.4 bits (80), Expect = 0.73
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +1

Query: 1108 EDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQ-GDKLVGEASRLV 1284
            E  + +SGI +T++R G         Y  N L  A A     V IG  GD  +  A+R  
Sbjct: 122  EKMLADSGIVYTLLRNGW--------YSENYLASAPAALEHGVFIGAAGDGKIASATRAD 173

Query: 1285 VAEACIQALDIESTQGKIYEIS 1350
             A A  + +     +GK+YE++
Sbjct: 174  YAAAAARVISEAGHEGKVYELA 195

>P48279:YCF39_CYAPA Uncharacterized protein ycf39 - Cyanophora paradoxa|
          Length = 321

 Score = 35.4 bits (80), Expect = 0.73
 Identities = 42/209 (20%), Positives = 89/209 (42%), Gaps = 1/209 (0%)
 Frame = +1

Query: 724  SLLSREIKTRLLLRNPGKAASLFGKQDESVLQVYEGDTRNADDLNPEMFEGVTHVICTTG 903
            S L    + R L+RN  KAA L     E   ++  GD    + L P +  G+  +I T+ 
Sbjct: 19   SALDEGYQVRCLVRNLRKAAFL----KEWGAKLIWGDLSQPESLLPAL-TGIRVIIDTS- 72

Query: 904  TTAFPSKRWDGDNTPERVDWDGVRNFV-SAMPQTIKRLVLVSSIGVTKYNEIPWSIMNLF 1080
                 + R        +VD  G +  + +A    I++ +  S +   KY+++P       
Sbjct: 73   -----TSRPTDPAGVYQVDLKGKKALIDAAKAMKIEKFIFFSILNSEKYSQVP------- 120

Query: 1081 GVLKYKKMAEDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQGDKL 1260
             +++ K + E+ ++ SG+ +TI +      G    Y +  L      +++ V I      
Sbjct: 121  -LMRIKTVTEELLKESGLNYTIFKLCGFFQGLIGQYAVPIL------DQQTVWITTESTS 173

Query: 1261 VGEASRLVVAEACIQALDIESTQGKIYEI 1347
            +     + +A   +++L ++ T  +++ +
Sbjct: 174  IAYMDTIDIARFTLRSLVLKETNNRVFPL 202

>Q04304:YMY0_YEAST Uncharacterized protein YMR090W - Saccharomyces cerevisiae (Baker's|
            yeast)
          Length = 227

 Score = 34.7 bits (78), Expect = 1.2
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
 Frame = +1

Query: 955  VDWDGVRNFVSAMPQT-IKRLVLVSSIGVTKYNEIPWSIMNLFGVLKY---KKMAEDFVR 1122
            VD DG    V A  +  IKR V+VS++     +   W   N+ G+ +Y   K+ A+  VR
Sbjct: 93   VDLDGCIKVVEACEKAGIKRFVVVSALKAEDRDF--W--YNIKGLREYYIAKRSADREVR 148

Query: 1123 NSGIPFTIIRPGRL 1164
            NS + +TI++PG L
Sbjct: 149  NSNLDYTILQPGSL 162

>Q91660:GLI3_XENLA Zinc finger protein GLI3 - Xenopus laevis (African clawed frog)|
          Length = 1569

 Score = 32.7 bits (73), Expect = 4.7
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -2

Query: 1364 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 1215
            SPF+    YI P++D I    +H+S + +++++   LSP  +  A +SPA
Sbjct: 189  SPFSPPHPYISPYMDYIRS--LHSSPSLSMISAARGLSPTDVPHAGISPA 236

>Q24238:APH4_DROME Alkaline phosphatase 4 precursor - Drosophila melanogaster (Fruit|
            fly)
          Length = 596

 Score = 32.3 bits (72), Expect = 6.2
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
 Frame = +1

Query: 841  NADDLNPEMFEGVTHVICTTGTTAFPSKRWDGDNTPERVDWDGVRNFVSAMPQTIKRLVL 1020
            NA ++   +FEG T  ICT G        W   +  + V    V N    +   +K++  
Sbjct: 262  NASEVKTTIFEGPTETICTRGDNRNLPAEWLAHHANDTVPPALVHNRKDLLNVNVKKVDH 321

Query: 1021 VSSIGVTKYNEIPWSIMNLFGVLKYKKMAEDFV-------RNSGIPFTIIRPGRLTDGPY 1179
            +  +G+ + N I +SI    G    ++M E  +        ++G    ++  GR+  G +
Sbjct: 322  L--MGLFRNNHITYSIAREAGEPSLQEMTETALGILERGDESNGF-VLLVEGGRIDQGHH 378

Query: 1180 TSY 1188
             +Y
Sbjct: 379  MNY 381

>P08800:UGPA_DICDI UTP--glucose-1-phosphate uridylyltransferase - Dictyostelium|
            discoideum (Slime mold)
          Length = 511

 Score = 32.0 bits (71), Expect = 8.1
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = +2

Query: 1199 HLLRLQLEKDEQLR*AKVTSLWEKRADWWWQKHVSKL---------WILNLPKEKYTRLV 1351
            HLL L   K E+L+  K   LW     W   K VS L         WI+N P E +  +V
Sbjct: 310  HLLELSQVKPEKLKIFKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMV 369

Query: 1352 R 1354
            +
Sbjct: 370  Q 370

>O84304:SYV_CHLTR Valyl-tRNA synthetase - Chlamydia trachomatis|
          Length = 939

 Score = 32.0 bits (71), Expect = 8.1
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
 Frame = +1

Query: 1174 PYTSYDLNTLVKATAGERRAVEIGQGDKLVGEASRLVVAEACIQA-----LDIESTQG-- 1332
            PY +  L   +KAT G    VE G+GD + G A  ++ +EAC+ A     + +   QG  
Sbjct: 732  PYITETLFQKLKATLG---TVENGKGDSVTGHAVSMLRSEACMVAEYPKPIHVAFPQGLR 788

Query: 1333 --------KIYEISSVKGE 1365
                     +Y I +++GE
Sbjct: 789  ESFGIAERLVYTIRNIRGE 807


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 287,877,749
Number of extensions: 6316679
Number of successful extensions: 17983
Number of sequences better than 10.0: 11
Number of HSP's gapped: 17959
Number of HSP's successfully gapped: 11
Length of query: 565
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 446
Effective length of database: 68,045,334
Effective search space: 30348218964
Effective search space used: 30348218964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)