ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf137c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os09g38400:12009.t03308:unspliced-genomic zinc finger pr... 28 0.024
2LOC_Os08g23720:12008.t02143:unspliced-genomic glucan endo-1,... 33 2.5
3LOC_Os06g43060:12006.t03996:unspliced-genomic expressed protein 33 3.5
4LOC_Os01g27150:12001.t02419:unspliced-genomic cullin-1, puta... 32 4.7
5LOC_Os05g33400:12005.t02935:unspliced-genomic basic 7S globu... 31 9.0

>LOC_Os09g38400:12009.t03308:unspliced-genomic zinc finger protein hangover, putative, expressed|
          Length = 2233
 Score = 27.6 bits (54), Expect(3) = 0.024
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3 / -2

                          
Query: 224  ISCWPSLKISAPLF 183
            I+CW SL ISAP F
Sbjct: 1545 IACWSSLNISAPPF 1504



 Score = 26.7 bits (52), Expect(3) = 0.024
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3 / -2

                     
Query: 569  HFFFLAGGW 543
            HFFFL GGW
Sbjct: 1968 HFFFLEGGW 1942



 Score = 25.8 bits (50), Expect(3) = 0.024
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3 / -2

                           
Query: 272  LFSGTVSDLILPNCL 228
            LFSG  SDLILP+ L
Sbjct: 1683 LFSGVDSDLILPSSL 1639



 Score = 27.2 bits (53), Expect(2) = 0.32
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1 / +2

                        
Query: 238  GRIKSETVPENK 273
            GRIKSE+ PENK
Sbjct: 1649 GRIKSESTPENK 1684



 Score = 26.3 bits (51), Expect(2) = 0.32
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1 / +2

                            
Query: 184  NNGADIFNDGQQEIIK 231
            N GADIFN+ Q  I K
Sbjct: 1505 NGGADIFNEDQHAIYK 1552



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>LOC_Os08g23720:12008.t02143:unspliced-genomic glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed|
          Length = 5263

 Score = 33.1 bits (66), Expect = 2.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2 / -2

                                     
Query: 569  DLVPSSCCVSVR*FICCLDHD*AGL 643
            D+ PS     V  F+CCL HD*+GL
Sbjct: 4269 DIHPSEAPQDVEEFLCCLKHD*SGL 4195



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>LOC_Os06g43060:12006.t03996:unspliced-genomic expressed protein|
          Length = 610

 Score = 32.7 bits (65), Expect = 3.5
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -2 / -2

                                                             
Query: 735 HNAGNNIRSSMFYSMRHQTTTTQKLHRSVCTRPAQS*SRQQIN*RTETQQ 586
           HN  +   + +  S  HQTT+T K++ +V T+P +S + Q I+    T++
Sbjct: 540 HNI*STTNNQLPSS*IHQTTSTHKINPTVSTQPMRSIADQSIDHNQTTRR 391



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>LOC_Os01g27150:12001.t02419:unspliced-genomic cullin-1, putative, expressed|
          Length = 8746

 Score = 32.2 bits (64), Expect = 4.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3 / +2

                                           
Query: 681  FGVS*SRTLNF*CCFLRCASSLNISLLMCLL 773
            + V *  ++NF*CC +  A +  ISL+ C++
Sbjct: 7352 YSVV*YESVNF*CCIINYACTFLISLVQCII 7444



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>LOC_Os05g33400:12005.t02935:unspliced-genomic basic 7S globulin precursor, putative, expressed|
          Length = 1482

 Score = 31.3 bits (62), Expect = 9.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2 / +2

                               
Query: 819 FFFGVTRIRLNGITAPINTS 760
           +F G+TRI++NG   P+NT+
Sbjct: 830 YFVGLTRIKVNGRAVPLNTT 889


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 195,075,529
Number of extensions: 2486724
Number of successful extensions: 8874
Number of sequences better than 10.0: 5
Length of query: 275
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 226
Effective length of database: 52,856,264
Effective search space: 11945515664
Effective search space used: 11945515664
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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