ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf137c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ175838.1| Hordeum vulgare clone DsB41 Ds insertion site flanking region genomic sequence Length = 575 Score = 404 bits (204), Expect = e-109 Identities = 206/207 (99%) Strand = Plus / Minus Query: 543 ccagccgccggccaagaagaagaaatgatcttgtgccttccagctgttgtgtttcagtcc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 ccagccgccggccaagaagaagaaatgatcttgtgccttccagctgttgtgtttcagtcc 148 Query: 603 gttagtttatctgctgtctagatcatgattgagcgggtctggtacacaccgacctatgta 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 gttagtttatctgctgtctagatcatgattgagcgggtctggtacacaccgacctatgta 88 Query: 663 gcttctgtgtcgtggtggtttggtgtctcatagagtagaacattgaacttctgatgttgt 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 gcttctgtgtcgtggtggtttggtgtctcatagagtagaacattgaacttctgatgttgt 28 Query: 723 ttcctgcgttgtgcaagtagtcttaac 749 ||| ||||||||||||||||||||||| Sbjct: 27 ttcntgcgttgtgcaagtagtcttaac 1 Score = 168 bits (85), Expect = 2e-38 Identities = 85/85 (100%) Strand = Plus / Minus Query: 356 gggaggacttctctggtgaagaaggcgaggatgatgatgaggacgatgaccctgaggcaa 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 gggaggacttctctggtgaagaaggcgaggatgatgatgaggacgatgaccctgaggcaa 335 Query: 416 atggcgatgatgcaggcgcagggag 440 ||||||||||||||||||||||||| Sbjct: 334 atggcgatgatgcaggcgcagggag 310 Score = 83.8 bits (42), Expect = 9e-13 Identities = 79/85 (92%), Gaps = 5/85 (5%) Strand = Plus / Minus Query: 205 aatgatggccag-caagaaattatc-aagcaatttggcagaa-tcaaatct-gagactgt 260 |||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||| Sbjct: 550 aatgatggccaggcaagaaattatccaagcaatttggcagaantcaaatcttgagactgt 491 Query: 261 tccggagaac-aaggatgcagggtc 284 ||||| |||| |||||||||||||| Sbjct: 490 tccggngaacaaaggatgcagggtc 466
>ref|NM_113196.2| Arabidopsis thaliana pyruvate kinase (AT3G22960) mRNA, complete cds Length = 2139 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 380 gcgaggatgatgatgaggacgatga 404 ||||||||||||||||||||||||| Sbjct: 336 gcgaggatgatgatgaggacgatga 312
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 50.1 bits (25), Expect = 0.013 Identities = 31/33 (93%) Strand = Plus / Plus Query: 373 gaagaaggcgaggatgatgatgaggacgatgac 405 ||||| || |||||||||||||||||||||||| Sbjct: 1658043 gaagagggagaggatgatgatgaggacgatgac 1658075
>gb|AC183495.1| Brassica oleracea Contig A, complete sequence Length = 356505 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 374 aagaaggcgaggatgatgatgagga 398 ||||||||||||||||||||||||| Sbjct: 3277 aagaaggcgaggatgatgatgagga 3253
>gb|AF475105.1| Triticum aestivum apomixis-associated protein mRNA, partial cds Length = 435 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgag 396 ||||||||||||||||||||||||| Sbjct: 39 tgaagaaggcgaggatgatgatgag 63
>gb|AY058084.1| Arabidopsis thaliana AT3g22960/F5N5_15 mRNA, complete cds Length = 2124 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 380 gcgaggatgatgatgaggacgatga 404 ||||||||||||||||||||||||| Sbjct: 337 gcgaggatgatgatgaggacgatga 313
>gb|AY056793.1| Arabidopsis thaliana AT3g22960/F5N5_15 mRNA, complete cds Length = 2096 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 380 gcgaggatgatgatgaggacgatga 404 ||||||||||||||||||||||||| Sbjct: 310 gcgaggatgatgatgaggacgatga 286
>gb|AY085149.1| Arabidopsis thaliana clone 13351 mRNA, complete sequence Length = 2118 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 380 gcgaggatgatgatgaggacgatga 404 ||||||||||||||||||||||||| Sbjct: 332 gcgaggatgatgatgaggacgatga 308
>dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5 Length = 71327 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 380 gcgaggatgatgatgaggacgatga 404 ||||||||||||||||||||||||| Sbjct: 51511 gcgaggatgatgatgaggacgatga 51487
>gb|BT002329.1| Arabidopsis thaliana clone C104993 putative pyruvate kinase (At3g22960) mRNA, complete cds Length = 1822 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 380 gcgaggatgatgatgaggacgatga 404 ||||||||||||||||||||||||| Sbjct: 202 gcgaggatgatgatgaggacgatga 178
>ref|XM_569760.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC05550) partial mRNA Length = 2268 Score = 50.1 bits (25), Expect = 0.013 Identities = 31/33 (93%) Strand = Plus / Plus Query: 373 gaagaaggcgaggatgatgatgaggacgatgac 405 ||||| || |||||||||||||||||||||||| Sbjct: 1894 gaagagggagaggatgatgatgaggacgatgac 1926
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 48.1 bits (24), Expect = 0.050 Identities = 30/32 (93%) Strand = Plus / Plus Query: 388 gatgatgaggacgatgaccctgaggcaaatgg 419 |||||||| || |||||||||||||||||||| Sbjct: 10708 gatgatgatgatgatgaccctgaggcaaatgg 10739
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 48.1 bits (24), Expect = 0.050 Identities = 30/32 (93%) Strand = Plus / Plus Query: 388 gatgatgaggacgatgaccctgaggcaaatgg 419 |||||||| || |||||||||||||||||||| Sbjct: 21805274 gatgatgatgatgatgaccctgaggcaaatgg 21805305
>gb|DQ323065.1| Triticum aestivum cadmium tolerance factor mRNA, complete cds Length = 2998 Score = 48.1 bits (24), Expect = 0.050 Identities = 27/28 (96%) Strand = Plus / Minus Query: 379 ggcgaggatgatgatgaggacgatgacc 406 ||||||||||| |||||||||||||||| Sbjct: 386 ggcgaggatgaggatgaggacgatgacc 359
>gb|AC189368.1| Brassica rapa subsp. pekinensis clone KBrB047A09, complete sequence Length = 142540 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Minus Query: 382 gaggatgatgatgaggacgatga 404 ||||||||||||||||||||||| Sbjct: 48969 gaggatgatgatgaggacgatga 48947
>gb|BC072226.1| Xenopus laevis hypothetical protein MGC81455, mRNA (cDNA clone MGC:81455 IMAGE:6636028), complete cds Length = 5120 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Minus Query: 382 gaggatgatgatgaggacgatga 404 ||||||||||||||||||||||| Sbjct: 4045 gaggatgatgatgaggacgatga 4023
>gb|AE012340.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 248 of 460 of the complete genome Length = 10821 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 108 ggcgggcgcgtccgcggcggtggccgt 134 ||||||||||||| ||||||||||||| Sbjct: 7602 ggcgggcgcgtccacggcggtggccgt 7576
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 108 ggcgggcgcgtccgcggcggtggccgt 134 ||||||||||||| ||||||||||||| Sbjct: 2175914 ggcgggcgcgtccacggcggtggccgt 2175940
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Minus Query: 382 gaggatgatgatgaggacgatga 404 ||||||||||||||||||||||| Sbjct: 129112 gaggatgatgatgaggacgatga 129090
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Minus Query: 379 ggcgaggatgatgatgaggacgatga 404 |||||||||||| ||||||||||||| Sbjct: 6163338 ggcgaggatgattatgaggacgatga 6163313
>gb|BT026587.1| Gasterosteus aculeatus clone CEC10-H04 mRNA sequence Length = 1641 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 376 gaaggcgaggatgatgatgaggacga 401 ||||||||||| |||||||||||||| Sbjct: 831 gaaggcgaggacgatgatgaggacga 856
>ref|NM_118433.3| Arabidopsis thaliana unknown protein (AT4G23040) mRNA, complete cds Length = 1819 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 892 gatgatgatgatgacgatgaccctga 917
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 agaaattatcaagcaatttggc 240 |||||||||||||||||||||| Sbjct: 3100347 agaaattatcaagcaatttggc 3100326
>ref|NM_139776.2| Drosophila melanogaster CG10289-RA (CG10289), mRNA Length = 3433 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 ggcgaggatgatgatgaggacgatga 404 |||||||||||| ||||||||||||| Sbjct: 2935 ggcgaggatgattatgaggacgatga 2960
>gb|AY142615.1| Arabidopsis thaliana unknown protein (At4g23040) mRNA, complete cds Length = 1609 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 772 gatgatgatgatgacgatgaccctga 797
>gb|AF360264.1| Arabidopsis thaliana unknown protein (At4g23040) mRNA, complete cds Length = 1832 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 889 gatgatgatgatgacgatgaccctga 914
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 ggcggtggccgtcgccgcgcag 144 |||||||||||||||||||||| Sbjct: 952577 ggcggtggccgtcgccgcgcag 952556
>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174551 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Minus Query: 379 ggcgaggatgatgatgaggacgatga 404 |||||||||||| ||||||||||||| Sbjct: 92185 ggcgaggatgattatgaggacgatga 92160
>emb|Z49910.1|CEF44G4 Caenorhabditis elegans Cosmid F44G4, complete sequence Length = 22545 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 373 gaagaaggcgaggatgatgatgagga 398 ||||||||||| |||||||||||||| Sbjct: 16645 gaagaaggcgatgatgatgatgagga 16670
>gb|AY061576.1| Drosophila melanogaster SD02803 full length cDNA Length = 3419 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 ggcgaggatgatgatgaggacgatga 404 |||||||||||| ||||||||||||| Sbjct: 2921 ggcgaggatgattatgaggacgatga 2946
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 gacggcgggcgcgtccgcggcg 126 |||||||||||||||||||||| Sbjct: 942586 gacggcgggcgcgtccgcggcg 942607
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58 Length = 193550 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Minus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 119269 gatgatgatgatgacgatgaccctga 119244
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project) Length = 139316 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Minus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 90182 gatgatgatgatgacgatgaccctga 90157
>emb|BX828365.1|CNS0A3YR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1783 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 892 gatgatgatgatgacgatgaccctga 917
>emb|BX827495.1|CNS0A3M1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS64ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1768 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgaccctga 410 ||||||||||| |||||||||||||| Sbjct: 864 gatgatgatgatgacgatgaccctga 889
>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252), and DS08881 (D260)), complete sequence Length = 196672 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 ggcgaggatgatgatgaggacgatga 404 |||||||||||| ||||||||||||| Sbjct: 148369 ggcgaggatgattatgaggacgatga 148394
>gb|EF058907.1| Synthetic construct Saccharomyces cerevisiae clone FLH202816.01X SPT5, complete sequence Length = 3192 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 475 gatgatgatgaggacgatgac 495
>gb|AC138065.26| Pan troglodytes clone rp43-11g4, complete sequence Length = 173247 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 556 aagaagaagaaatgatcttgt 576 ||||||||||||||||||||| Sbjct: 134175 aagaagaagaaatgatcttgt 134155
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 cgcggcggtggccgtcgccgc 140 ||||||||||||||||||||| Sbjct: 532315 cgcggcggtggccgtcgccgc 532295
>ref|NM_001055808.1| Oryza sativa (japonica cultivar-group) Os03g0197700 (Os03g0197700) mRNA, complete cds Length = 735 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 cagccgccggccaagaagaag 564 ||||||||||||||||||||| Sbjct: 182 cagccgccggccaagaagaag 202
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 4999755 tgaagaagacgaagatgaggatgaggacgatga 4999723
>gb|AC186561.1| Gasterosteus aculeatus clone VMRC28-125N12, complete sequence Length = 147166 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 373 gaagaaggcgaggatgatgatgaggacgatgac 405 ||||| |||| |||||||||||| ||||||||| Sbjct: 70205 gaagagggcgcggatgatgatgatgacgatgac 70173
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 3534943 gatgatgatgaggacgatgac 3534923
>ref|XM_965173.1| PREDICTED: Tribolium castaneum similar to CG33304-PA (LOC658816), mRNA Length = 4461 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ctgctgcttctcctcgctctc 168 ||||||||||||||||||||| Sbjct: 2313 ctgctgcttctcctcgctctc 2293
>gb|BC108539.1| Xenopus laevis hypothetical protein MGC130995, mRNA (cDNA clone MGC:130995 IMAGE:7977994), complete cds Length = 1546 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 1221 gatgatgatgaggacgatgac 1201
>ref|NM_104346.2| Arabidopsis thaliana unknown protein (AT1G54710) mRNA, complete cds Length = 3335 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 3027 gatgatgatgaggacgatgac 3047
>ref|NM_001008110.1| Xenopus tropicalis stx4a protein (stx4a), mRNA gb|BC081314.1| Xenopus tropicalis stx4a protein, mRNA (cDNA clone MGC:89357 IMAGE:6988076), complete cds Length = 1423 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 atgatgatgaggacgatgacc 406 ||||||||||||||||||||| Sbjct: 979 atgatgatgaggacgatgacc 959
>gb|AC123713.13| Mus musculus chromosome 7, clone RP23-391D20, complete sequence Length = 183590 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 375 agaaggcgaggatgatgatgaggacgatg 403 |||||| |||||||||||||| ||||||| Sbjct: 42907 agaaggagaggatgatgatgatgacgatg 42935
>gb|AC160540.7| Mus musculus chromosome 7, clone RP23-44O19, complete sequence Length = 221807 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 375 agaaggcgaggatgatgatgaggacgatg 403 |||||| |||||||||||||| ||||||| Sbjct: 80957 agaaggagaggatgatgatgatgacgatg 80929
>ref|XM_532128.2| PREDICTED: Canis familiaris similar to MAM domain containing glycosylphosphatidylinositol anchor 1 (LOC474893), mRNA Length = 4141 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 ggtgcgctggacccagacggcgggc 114 ||||||||||||| ||||||||||| Sbjct: 1218 ggtgcgctggaccaagacggcgggc 1242
>gb|DQ406744.1| Volvox carteri f. nagariensis Met1 (met1) gene, complete cds Length = 29854 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 376 gaaggcgaggatgatgatgaggacgatga 404 |||||||||||||||||||| || ||||| Sbjct: 18783 gaaggcgaggatgatgatgacgatgatga 18811
>ref|NM_136611.2| Drosophila melanogaster Mystery 45A CG8070-RA (Mys45A), mRNA Length = 2391 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 1642 tgaagaagacgaagatgaggatgaggacgatga 1674
>gb|AF360222.1| Arabidopsis thaliana unknown protein (At1g54710) mRNA, complete cds Length = 3424 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 3025 gatgatgatgaggacgatgac 3045
>ref|XM_751756.1| Ustilago maydis 521 hypothetical protein (UM00702.1) partial mRNA Length = 5868 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 373 gaagaaggcgaggatgatgatgaggacga 401 ||||||||||| ||||||||||| ||||| Sbjct: 1510 gaagaaggcgatgatgatgatgaagacga 1538
>ref|NM_069035.2| Caenorhabditis elegans T26A8.1 (T26A8.1) mRNA, complete cds Length = 2639 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 243 gatgatgatgaggacgatgac 263
>gb|AC106754.3| Homo sapiens chromosome 5 clone RP11-184E9, complete sequence Length = 123535 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 agaatcaaatctgagactgtt 261 ||||||||||||||||||||| Sbjct: 42987 agaatcaaatctgagactgtt 42967
>ref|XM_806792.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506977.80) partial mRNA Length = 2475 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 384 ggatgatgatgaggacgatgaccctgagg 412 ||||||||||||||| |||||| |||||| Sbjct: 1008 ggatgatgatgaggatgatgactctgagg 980
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 381 cgaggatgatgatgaggacgatgac 405 ||||||||| ||||||||||||||| Sbjct: 1919751 cgaggatgaagatgaggacgatgac 1919727
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 544 cagccgccggccaagaagaag 564 ||||||||||||||||||||| Sbjct: 66766 cagccgccggccaagaagaag 66746
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 544 cagccgccggccaagaagaag 564 ||||||||||||||||||||| Sbjct: 153579 cagccgccggccaagaagaag 153559
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||| | ||||||||||||||| |||||||| Sbjct: 17654149 tgaagatgacgaggatgatgatgatgacgatga 17654181
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 ggcgatggcgacggcggtgcg 95 ||||||||||||||||||||| Sbjct: 14473136 ggcgatggcgacggcggtgcg 14473156
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 cagccgccggccaagaagaag 564 ||||||||||||||||||||| Sbjct: 5102156 cagccgccggccaagaagaag 5102176
>gb|AY070560.1| Drosophila melanogaster LD33051 full length cDNA Length = 2390 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 1627 tgaagaagacgaagatgaggatgaggacgatga 1659
>gb|AF173549.1|AF173549 Drosophila melanogaster mystery 45A mRNA, complete cds Length = 2139 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 1560 tgaagaagacgaagatgaggatgaggacgatga 1592
>gb|AC093049.1| Drosophila melanogaster, chromosome 2R, region 45A-45A, BAC clone BACR08E17, complete sequence Length = 178262 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 10095 tgaagaagacgaagatgaggatgaggacgatga 10127
>emb|Z49810.1|SC9571X S.cerevisiae chromosome XIII cosmid 9571 Length = 29366 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 12213 gatgatgatgaggacgatgac 12233
>emb|CR857335.1| Pongo pygmaeus mRNA; cDNA DKFZp469M0132 (from clone DKFZp469M0132) Length = 2581 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 382 gaggatgatgatgaggacgatgaccctga 410 ||||||||||||||||| |||||| |||| Sbjct: 734 gaggatgatgatgaggaagatgactctga 762
>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence Length = 87768 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 45694 gatgatgatgaggacgatgac 45674
>gb|AY157995.1| Takifugu rubripes synapsin 2B (Syn2B) gene, complete cds Length = 8356 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 369 tggtgaagaaggcgaggatgatgatgaggacga 401 |||||| |||| |||||||| |||||||||||| Sbjct: 3390 tggtgatgaagacgaggatggtgatgaggacga 3422
>gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, region 45A-46A, BAC clone BACR10M14, complete sequence Length = 189757 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 39955 tgaagaagacgaagatgaggatgaggacgatga 39923
>gb|AC141420.11| Pan troglodytes clone rp43-149n17, complete sequence Length = 167816 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 556 aagaagaagaaatgatcttgt 576 ||||||||||||||||||||| Sbjct: 136529 aagaagaagaaatgatcttgt 136549
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 ggcgatggcgacggcggtgcg 95 ||||||||||||||||||||| Sbjct: 66310 ggcgatggcgacggcggtgcg 66330
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||| | ||||||||||||||| |||||||| Sbjct: 58182 tgaagatgacgaggatgatgatgatgacgatga 58214
>gb|U46674.1| Caenorhabditis elegans cosmid T26A8, complete sequence Length = 23113 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 14653 gatgatgatgaggacgatgac 14673
>ref|XM_951589.1| Neurospora crassa OR74A hypothetical protein (NCU00169.1) partial mRNA Length = 2103 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 2044 gatgatgatgaggacgatgac 2064
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 cgaggatgatgatgaggacgatgac 405 ||||||||| ||||||||||||||| Sbjct: 2363143 cgaggatgaagatgaggacgatgac 2363167
>gb|AC006074.1|AC006074 Drosophila melanogaster, chromosome 2R, region 44F12-45A4, P1 clones DS05998, DS07727, DS05175, and DS01885, complete sequence Length = 204617 Score = 42.1 bits (21), Expect = 3.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatgatgaggacgatga 404 |||||||| ||| ||||| |||||||||||||| Sbjct: 1907 tgaagaagacgaagatgaggatgaggacgatga 1939
>ref|XM_727101.1| Plasmodium chabaudi chabaudi hypothetical protein (PC404291.00.0) partial mRNA Length = 143 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 tgaagaaggcgaggatgatga 392 ||||||||||||||||||||| Sbjct: 99 tgaagaaggcgaggatgatga 119
>emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on chromosome 2, complete sequence Length = 191052 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 788 ttcaatctaattcttgttact 808 ||||||||||||||||||||| Sbjct: 132662 ttcaatctaattcttgttact 132682
>gb|M62882.1|YSCSPT5 Saccharomyces cerevisiae SPT5 gene, complete cds Length = 3936 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gatgatgatgaggacgatgac 405 ||||||||||||||||||||| Sbjct: 1087 gatgatgatgaggacgatgac 1107 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 113,095,375 Number of extensions: 7578712 Number of successful extensions: 156385 Number of sequences better than 10.0: 81 Number of HSP's gapped: 156383 Number of HSP's successfully gapped: 83 Length of query: 826 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 804 Effective length of database: 18,508,616,841 Effective search space: 14880927940164 Effective search space used: 14880927940164 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
