ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf139h15 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os08g27090:12008.t02473:unspliced-genomic 30S ribosomal protein S17, putative, expressed| Length = 4215 Score = 123 bits (264), Expect(2) = 4e-39 Identities = 51/55 (92%), Positives = 53/55 (96%) Frame = +1 / +1 Query: 112 MKPVVGIVVSNKMQKSVVVAVDRLFHNKVYNRYVKRTSKFMAHDEAETCNIGDRV 276 MKPVVGIVVSNKMQKSVVVAVDRLFH+K+YNRYVKRTSKFMAHDE E CNIGDRV Sbjct: 205 MKPVVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDETEDCNIGDRV 369 Score = 63.8 bits (133), Expect(2) = 4e-39 Identities = 25/38 (65%), Positives = 30/38 (78%) Frame = +1 / +3 Query: 271 RVRLDPSRPLSKNKHWIVAEVLRRAKMYVAQPPAAKAS 384 +V+LDPSRPLSK KHW+VAE+LRRAK+Y AA S Sbjct: 3774 QVKLDPSRPLSKRKHWVVAEILRRAKVYSPSAAAAAVS 3887 Score = 112 bits (239), Expect(2) = 1e-33 Identities = 48/53 (90%), Positives = 48/53 (90%) Frame = -1 / -2 Query: 275 TLSPMLQVSASSCAMNLEVRLT*RLYTLLWKRRSTATTTDFCILFDTTIPTTG 117 T SPMLQ S SSCAMNLEVRLT*RLY L WKRRSTATTTDFCILFDTTIPTTG Sbjct: 368 TRSPMLQSSVSSCAMNLEVRLT*RLYILWWKRRSTATTTDFCILFDTTIPTTG 210 Score = 57.0 bits (118), Expect(2) = 1e-33 Identities = 24/38 (63%), Positives = 28/38 (73%) Frame = -3 / -2 Query: 387 TRSFCCRWLCNIHLSSAKNLGNNPMLVFAQRPRRIQPN 274 +R+ CC IHLSS KNLGNNP+L FAQ PRRI+ N Sbjct: 3890 SRNCCCSS*WRIHLSSTKNLGNNPVLPFAQGPRRIKLN 3777 Score = 57.9 bits (120), Expect(2) = 2e-12 Identities = 26/38 (68%), Positives = 29/38 (76%) Frame = +2 / +1 Query: 275 LGWILLGR*AKTSIGLLPRFFAELRCMLHSHLQQKLLV 388 L ILLG *AK S GLLPRFF ELRC+LH LQQ+ L+ Sbjct: 3778 LSLILLGP*AKGSTGLLPRFFVELRCILHQLLQQQFLL 3891 Score = 39.6 bits (80), Expect(2) = 2e-12 Identities = 17/22 (77%), Positives = 17/22 (77%) Frame = +3 / +3 Query: 210 RQAHLQVHGARRGRDLQHRRQG 275 RQAHLQVHGAR R L HRR G Sbjct: 303 RQAHLQVHGAR*DRGL*HRRPG 368 Score = 46.9 bits (96), Expect(2) = 2e-09 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = -2 / -1 Query: 385 QKLLLQVAVQHTS*LCEEPRQQSNACFCSTA*KD 284 QKLLLQ +++T *L EE RQQ +A FCS A*KD Sbjct: 3888 QKLLLQQLMENTP*LYEESRQQPSASFCSRA*KD 3787 Score = 40.5 bits (82), Expect(2) = 2e-09 Identities = 16/20 (80%), Positives = 18/20 (90%) Frame = -3 / -1 Query: 276 NPVADVAGLGLVVRHELGGA 217 +PVADV LGL+VRHELGGA Sbjct: 369 DPVADVTVLGLIVRHELGGA 310 Score = 55.1 bits (114), Expect = 7e-07 Identities = 29/68 (42%), Positives = 38/68 (55%) Frame = -1 / -3 Query: 383 EAFAAGGCATYILALRRTSATIQCLFLLNGLEGSSLTLSPMLQVSASSCAMNLEVRLT*R 204 E AA Y LALRR SAT QC LL GLEGSSLT ++Q S+ + ++ R Sbjct: 3886 ETAAAAADGEYTLALRRISATTQCFLLLKGLEGSSLTWREIIQSSSKRFFLEIKN*CALR 3707 Query: 203 LYTLLWKR 180 + + +KR Sbjct: 3706 SHFVNYKR 3683 Score = 48.7 bits (100), Expect = 6e-05 Identities = 24/37 (64%), Positives = 27/37 (72%) Frame = +3 / +2 Query: 273 G*AGSF*AVEQKQALDCCRGSSQS*DVCCTATCSKSF 383 G*A SF*A+EQK+AL CCR SS S* V + CS SF Sbjct: 3776 G*A*SF*ALEQKEALGCCRDSS*S*GVFSISCCSSSF 3886
>LOC_Os04g59494:12004.t05406:unspliced-genomic transportin-2, putative, expressed| Length = 13425 Score = 57.9 bits (120), Expect = 1e-07 Identities = 28/69 (40%), Positives = 38/69 (55%) Frame = +1 / +1 Query: 115 KPVVGIVVSNKMQKSVVVAVDRLFHNKVYNRYVKRTSKFMAHDEAETCNIGDRVRLDPSR 294 K + G VV+ K K+V V V RL + Y R + K+ AHD +GD V L SR Sbjct: 12646 KQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSR 12825 Query: 295 PLSKNKHWI 321 P+SK KH++ Sbjct: 12826 PISKTKHFL 12852 Score = 34.5 bits (69), Expect = 1.2 Identities = 23/66 (34%), Positives = 30/66 (45%) Frame = -1 / -2 Query: 317 QCLFLLNGLEGSSLTLSPMLQVSASSCAMNLEVRLT*RLYTLLWKRRSTATTTDFCILFD 138 +CL L G E S T SP L + SCA + + RLY R+T+T T Sbjct: 12848 KCLVLEMGRERRSSTTSPTLNWLSGSCAWYFFLMRSRRLYFG*GASRTTSTPTVLSAFVV 12669 Query: 137 TTIPTT 120 TT P + Sbjct: 12668 TTRPVS 12651
>LOC_Os05g31600:12005.t02757:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass, expressed| Length = 4164 Score = 34.1 bits (68), Expect = 1.6 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +1 / +2 Query: 334 LRRAKMYVAQPPAAKASGATTQQTSPKSSA*RSPEP 441 L R VA PPA +S ATT P S RSP+P Sbjct: 2642 LGRLPRLVAPPPATASSSATTWCLGPPSVRRRSPDP 2749
>LOC_Os06g36090:12006.t03306:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,| expressed Length = 7430 Score = 30.9 bits (61), Expect(2) = 2.3 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -2 / -1 Query: 709 HALHHVWITIMRKWLSCTNDFAGANSKL*GP 617 HAL HVW + +L T F+ N K+* P Sbjct: 1157 HALLHVWTSEAHIYLMITTPFSSRNHKM*TP 1065 Score = 25.8 bits (50), Expect(2) = 2.3 Identities = 6/21 (28%), Positives = 13/21 (61%) Frame = -3 / -2 Query: 903 GLHHDDRSNQDHTFERGTWNK 841 G+H ++ +++H R W+K Sbjct: 7111 GIHEREKHSEEHEHRRNNWHK 7049
>LOC_Os05g43370:12005.t004768:unspliced-genomic pseudouridylate synthase, putative, expressed| Length = 5837 Score = 32.7 bits (65), Expect = 4.2 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +1 / +2 Query: 337 RRAKMYVAQPPAAKASGATTQQTSPKSSA*RSP 435 RR + A PP ++AS A++ +P SS+ RSP Sbjct: 107 RRRRGSPASPPPSRASAASSSTATPTSSSTRSP 205
>LOC_Os12g41490:12012.t03825:unspliced-genomic receptor-like protein kinase homolog RK20-1, putative, expressed| Length = 2793 Score = 29.0 bits (57), Expect(2) = 4.2 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 / +2 Query: 674 PHNSYPYMVEGMVTFMPELGPFDVSG 751 P N P + ++ F+P +GPF V G Sbjct: 2462 PPNLRPADLSNLLCFLPSIGPFTVQG 2539 Score = 25.4 bits (49), Expect(2) = 4.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 / +1 Query: 358 AQPPAAKASGATTQQTSPKSSA*RSPEPN 444 A+PPA + A+T++TS S P P+ Sbjct: 160 ARPPATTPATASTRRTSTSYSPPSPPAPS 246
>LOC_Os03g56944:12003.t04962:unspliced-genomic vegetative cell wall protein gp1 precursor, putative, expressed| Length = 625 Score = 25.4 bits (49), Expect(2) = 4.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 / -3 Query: 222 LQVHGARRGRDLQHRRQ 272 L+ HG GRD +HRRQ Sbjct: 509 LERHGHVHGRDGRHRRQ 459 Score = 24.4 bits (47), Expect(2) = 4.5 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +1 / -2 Query: 358 AQPPAAKASGATTQQTSP 411 A PPA +AS ATT P Sbjct: 414 ASPPARRASVATTPSAPP 361
>LOC_Os02g54500:12002.t05029:unspliced-genomic WD40-like, putative, expressed| Length = 7813 Score = 31.3 bits (62), Expect(2) = 5.7 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 / +1 Query: 358 AQPPAAKASGATTQQTSPKSSA*RSPEP 441 A+PP+ TT+ SP S+A R+P P Sbjct: 217 ARPPSTSGPPPTTRSASPASTAPRNPSP 300 Score = 24.0 bits (46), Expect(2) = 5.7 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +1 / +3 Query: 556 SCSAYQFICLQSETW 600 SC+A F+C +S T+ Sbjct: 4587 SCAARHFVCCESSTY 4631
>LOC_Os08g20544:12008.t01870:unspliced-genomic calcium lipid binding protein-like, putative, expressed| Length = 10658 Score = 32.2 bits (64), Expect = 5.8 Identities = 9/24 (37%), Positives = 17/24 (70%) Frame = -1 / -3 Query: 965 FAMHNQYIIQIESSAHPHKIRDYI 894 FA+H+QY + I + HP ++ D++ Sbjct: 453 FAIHHQYQLPITTDTHPRRVSDWV 382
>LOC_Os07g42924:12007.t03940:unspliced-genomic alcohol dehydrogenase 3, putative, expressed| Length = 7267 Score = 32.2 bits (64), Expect = 5.8 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +3 / +2 Query: 651 SLVQLNHFLIIVIHTWWRAW*HSCRSW 731 S V N + + WWRAW +CR W Sbjct: 3740 STVCHNFIIHLFSPVWWRAWGSTCRRW 3820
>LOC_Os06g14860:12006.t01361:unspliced-genomic hypothetical protein| Length = 1591 Score = 32.2 bits (64), Expect = 5.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 / -2 Query: 703 LHHVWITIMRKWLSCTNDFAGANSKL*GP 617 LHHV ++W NDF G +L*GP Sbjct: 222 LHHVRNPSQKEWKLQLNDFTGVRCRL*GP 136
>LOC_Os04g34330:12004.t03108:unspliced-genomic serine/threonine-protein kinase receptor precursor, putative| Length = 2605 Score = 32.2 bits (64), Expect = 5.8 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 / -1 Query: 350 CMLHSHLQQKLLVRQLNKLAPSHLPEDPQSPTHTCL*E 463 C+ HS ++ R + LAPSH +SP++TC *E Sbjct: 1045 CLYHSLMEYFSHSRLFDHLAPSHWVIVQRSPSYTCR*E 932
>LOC_Os08g02030:12008.t04265:unspliced-genomic expressed protein| Length = 1644 Score = 30.9 bits (61), Expect(2) = 6.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 / +3 Query: 337 RRAKMYVAQPPAAKASGATTQQTSPKSSA*RSPEP 441 RRA + + PPAA+ S T ++ S SA +P P Sbjct: 156 RRASSFPSHPPAARLSSNTWRRRSLAHSAASTPSP 260 Score = 22.1 bits (42), Expect(2) = 6.5 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = +2 / +2 Query: 758 LVCSLWLLDYCRRPVTL 808 LV W LD C P+ L Sbjct: 662 LVVKRWFLDNCTVPIPL 712
>LOC_Os09g34930:12009.t03020:unspliced-genomic acyltransferase, putative, expressed| Length = 1635 Score = 25.4 bits (49), Expect(2) = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 / +3 Query: 231 HGARRGRDLQHRRQG 275 HG RRGR + RR+G Sbjct: 612 HGLRRGRHRRRRRRG 656 Score = 23.5 bits (45), Expect(2) = 7.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 / +2 Query: 358 AQPPAAKASGATTQQTSPKSSA*RSP 435 A PP + A +S SSA*R+P Sbjct: 779 AAPPRSSPPNAAAAASSTGSSA*RAP 856
>LOC_Os06g26150:12006.t02422:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6387 Score = 30.9 bits (61), Expect(2) = 8.6 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +3 / +3 Query: 645 AKSLVQLNHFLIIVIHTWWRAW*HSCRS 728 A S +LN +++V + WW A+ C+S Sbjct: 744 ADSAARLNECIVLVCNAWWSAYAACCKS 827 Score = 23.5 bits (45), Expect(2) = 8.6 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +2 / +1 Query: 851 VPRSNV*SWLDLSS*CNPGFYAGV 922 +P ++ SW DL + FY+GV Sbjct: 1375 LPYGSINSWADLEKHFHSYFYSGV 1446 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 384,470,730 Number of extensions: 6325615 Number of successful extensions: 24557 Number of sequences better than 10.0: 15 Length of query: 325 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 275 Effective length of database: 52,799,986 Effective search space: 14519996150 Effective search space used: 14519996150 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
