| Clone Name | FLbaf139h15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT832452.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA038M22, full insert sequence Length = 732 Score = 311 bits (157), Expect = 3e-81 Identities = 217/237 (91%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 173 ccggtggtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggtggccgtcgac 232 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 cgcctcttccaccacaagatgtacaaccgctacgtcaagcgcacctccaagttcatggcg 292 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccg 297 ||||| ||| ||||| |||||||||||||||| |||||| ||| |||||||||||||| Sbjct: 293 cacgatgagaccgaggactgcaacatcggcgaccgggttaagcttgatccttctaggccc 352 Query: 298 ttgagcaaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgtat 354 |||||||||| ||||| ||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 353 ttgagcaaaaggaagcactgggttgttgccgagattcttcgtagagctaaggtgtat 409
>ref|NM_001068167.1| Oryza sativa (japonica cultivar-group) Os08g0359600 (Os08g0359600) mRNA, complete cds Length = 758 Score = 303 bits (153), Expect = 6e-79 Identities = 216/237 (91%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 209 ccggtggtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggtggccgtcgac 268 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 cgcctcttccaccacaagatgtacaaccgctacgtcaagcgcacctccaagttcatggcg 328 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccg 297 ||||| ||| ||||| ||| |||||||||||| |||||| ||| |||||||||||||| Sbjct: 329 cacgatgagaccgaggactgtaacatcggcgaccgggttaagcttgatccttctaggccc 388 Query: 298 ttgagcaaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgtat 354 |||||||||| ||||| ||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 389 ttgagcaaaaggaagcactgggttgttgccgagattcttcgtagagctaaggtgtat 445
>dbj|AK070753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065H04, full insert sequence Length = 761 Score = 303 bits (153), Expect = 6e-79 Identities = 216/237 (91%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 212 ccggtggtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggtggccgtcgac 271 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 cgcctcttccaccacaagatgtacaaccgctacgtcaagcgcacctccaagttcatggcg 331 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccg 297 ||||| ||| ||||| ||| |||||||||||| |||||| ||| |||||||||||||| Sbjct: 332 cacgatgagaccgaggactgtaacatcggcgaccgggttaagcttgatccttctaggccc 391 Query: 298 ttgagcaaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgtat 354 |||||||||| ||||| ||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 392 ttgagcaaaaggaagcactgggttgttgccgagattcttcgtagagctaaggtgtat 448
>gb|DQ244651.1| Zea mays clone 9921 mRNA sequence Length = 721 Score = 285 bits (144), Expect = 1e-73 Identities = 213/236 (90%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 174 ccggttgtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggttgcagtggac 233 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 234 cgtctcttccacaacaaggtatacaaccgctacgtcaagcgcacctccaagttcatggca 293 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccg 297 |||||||| | ||| |||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 294 cacgacgatgacgactcctgcaacattggcgaccgggttaggctggatccttctaggccc 353 Query: 298 ttgagcaaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgta 353 ||||||| | ||||||| ||| ||||||| || |||| |||||||||||| |||| Sbjct: 354 ttgagcagacacaagcactgggttgttgctgaaattctccgcagagctaaggtgta 409
>gb|DQ244634.1| Zea mays clone 9782 mRNA sequence Length = 721 Score = 285 bits (144), Expect = 1e-73 Identities = 213/236 (90%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 174 ccggttgtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggttgcagtggac 233 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 234 cgtctcttccacaacaaggtatacaaccgctacgtcaagcgcacctccaagttcatggca 293 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccg 297 |||||||| | ||| |||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 294 cacgacgatgacgactcctgcaacattggcgaccgggttaggctggatccttctaggccc 353 Query: 298 ttgagcaaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgta 353 ||||||| | ||||||| ||| ||||||| || |||| |||||||||||| |||| Sbjct: 354 ttgagcagacacaagcactgggttgttgctgaaattctccgcagagctaaggtgta 409
>gb|AY106015.1| Zea mays PCO066552 mRNA sequence Length = 969 Score = 285 bits (144), Expect = 1e-73 Identities = 213/236 (90%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 162 ccggttgtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggttgcagtggac 221 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 222 cgtctcttccacaacaaggtatacaaccgctacgtcaagcgcacctccaagttcatggca 281 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccg 297 |||||||| | ||| |||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 282 cacgacgatgacgactcctgcaacattggcgaccgggttaggctggatccttctaggccc 341 Query: 298 ttgagcaaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgta 353 ||||||| | ||||||| ||| ||||||| || |||| |||||||||||| |||| Sbjct: 342 ttgagcagacacaagcactgggttgttgctgaaattctccgcagagctaaggtgta 397
>gb|BT019324.1| Zea mays clone Contig1032.F mRNA sequence Length = 647 Score = 281 bits (142), Expect = 2e-72 Identities = 208/230 (90%) Strand = Plus / Plus Query: 124 gtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctc 183 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 105 gtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggttgcagtggaccgcctc 164 Query: 184 ttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgac 243 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 165 ttccacaacaaggtatacaaccgctacgtcaagcgcacctccaagttcatggcacacgac 224 Query: 244 gaggccgagacctgcaacatcggcgacagggttaggctggatccttctaggccgttgagc 303 || | | | |||||||||| |||||| ||||||||||||||||||||||||| |||||| Sbjct: 225 gatgaccacccctgcaacattggcgaccgggttaggctggatccttctaggcccttgagc 284 Query: 304 aaaaacaagcattggattgttgccgaggttcttcgcagagctaagatgta 353 | | ||||||| ||| ||||||| || |||| |||||||||||| |||| Sbjct: 285 agacacaagcactgggttgttgctgaaattctccgcagagctaaggtgta 334
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 226 bits (114), Expect = 1e-55 Identities = 147/158 (93%) Strand = Plus / Minus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 16543199 ccggtggtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggtggccgtcgac 16543140 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 16543139 cgcctcttccaccacaagatgtacaaccgctacgtcaagcgcacctccaagttcatggcg 16543080 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggt 275 ||||| ||| ||||| ||| |||||||||||| |||| Sbjct: 16543079 cacgatgagaccgaggactgtaacatcggcgaccgggt 16543042 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Minus Query: 273 ggttaggctggatccttctaggccgttgagcaaaaacaagcattggattgttgccgaggt 332 ||||| ||| |||||||||||||| |||||||||| ||||| ||| ||||||||||| | Sbjct: 16539634 ggttaagcttgatccttctaggcccttgagcaaaaggaagcactgggttgttgccgagat 16539575 Query: 333 tcttcgcagagctaagatgtat 354 |||||| ||||||||| ||||| Sbjct: 16539574 tcttcgtagagctaaggtgtat 16539553
>dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E02 Length = 159669 Score = 226 bits (114), Expect = 1e-55 Identities = 147/158 (93%) Strand = Plus / Minus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 15023 ccggtggtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggtggccgtcgac 14964 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 14963 cgcctcttccaccacaagatgtacaaccgctacgtcaagcgcacctccaagttcatggcg 14904 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggt 275 ||||| ||| ||||| ||| |||||||||||| |||| Sbjct: 14903 cacgatgagaccgaggactgtaacatcggcgaccgggt 14866 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Minus Query: 273 ggttaggctggatccttctaggccgttgagcaaaaacaagcattggattgttgccgaggt 332 ||||| ||| |||||||||||||| |||||||||| ||||| ||| ||||||||||| | Sbjct: 11458 ggttaagcttgatccttctaggcccttgagcaaaaggaagcactgggttgttgccgagat 11399 Query: 333 tcttcgcagagctaagatgtat 354 |||||| ||||||||| ||||| Sbjct: 11398 tcttcgtagagctaaggtgtat 11377
>dbj|AP005523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0488B06 Length = 154764 Score = 226 bits (114), Expect = 1e-55 Identities = 147/158 (93%) Strand = Plus / Minus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 153855 ccggtggtggggatcgtggtgtcgaacaagatgcagaagtcggtggtggtggccgtcgac 153796 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcg 237 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 153795 cgcctcttccaccacaagatgtacaaccgctacgtcaagcgcacctccaagttcatggcg 153736 Query: 238 cacgacgaggccgagacctgcaacatcggcgacagggt 275 ||||| ||| ||||| ||| |||||||||||| |||| Sbjct: 153735 cacgatgagaccgaggactgtaacatcggcgaccgggt 153698 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Minus Query: 273 ggttaggctggatccttctaggccgttgagcaaaaacaagcattggattgttgccgaggt 332 ||||| ||| |||||||||||||| |||||||||| ||||| ||| ||||||||||| | Sbjct: 150290 ggttaagcttgatccttctaggcccttgagcaaaaggaagcactgggttgttgccgagat 150231 Query: 333 tcttcgcagagctaagatgtat 354 |||||| ||||||||| ||||| Sbjct: 150230 tcttcgtagagctaaggtgtat 150209
>ref|NM_112774.2| Arabidopsis thaliana structural constituent of ribosome (AT3G18880) mRNA, complete cds Length = 530 Score = 87.7 bits (44), Expect = 7e-14 Identities = 155/192 (80%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 |||||||||||||| ||||||| |||||||||||| || || ||| | ||||||||||| Sbjct: 32 gtggtgtcgaacaaaatgcagatgtcggtggtggtagccgtcgacagactcttccacaat 91 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacgaggccgag 252 || | ||||| || || |||||||| || |||||||||||||| ||||| || || Sbjct: 92 aatatctacaatcgatatgtcaagcgtacttccaagttcatggctcacgatgaaaaggac 151 Query: 253 acctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaag 312 |||| ||||||||||| | || | |||||||||| ||||| |||||||| | ||| Sbjct: 152 tcctgtaacatcggcgatcgagtgaaattggatccttcaaggcctttgagcaagcataag 211 Query: 313 cattggattgtt 324 |||||||||||| Sbjct: 212 cattggattgtt 223
>gb|BT004700.1| Arabidopsis thaliana At3g18880 gene, complete cds Length = 318 Score = 87.7 bits (44), Expect = 7e-14 Identities = 155/192 (80%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 |||||||||||||| ||||||| |||||||||||| || || ||| | ||||||||||| Sbjct: 22 gtggtgtcgaacaaaatgcagatgtcggtggtggtagccgtcgacagactcttccacaat 81 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacgaggccgag 252 || | ||||| || || |||||||| || |||||||||||||| ||||| || || Sbjct: 82 aatatctacaatcgatatgtcaagcgtacttccaagttcatggctcacgatgaaaaggac 141 Query: 253 acctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaag 312 |||| ||||||||||| | || | |||||||||| ||||| |||||||| | ||| Sbjct: 142 tcctgtaacatcggcgatcgagtgaaattggatccttcaaggcctttgagcaagcataag 201 Query: 313 cattggattgtt 324 |||||||||||| Sbjct: 202 cattggattgtt 213
>dbj|AK118396.1| Arabidopsis thaliana At3g18880 mRNA for putative ribosomal protein, complete cds, clone: RAFL19-65-I02 Length = 530 Score = 87.7 bits (44), Expect = 7e-14 Identities = 155/192 (80%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 |||||||||||||| ||||||| |||||||||||| || || ||| | ||||||||||| Sbjct: 32 gtggtgtcgaacaaaatgcagatgtcggtggtggtagccgtcgacagactcttccacaat 91 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacgaggccgag 252 || | ||||| || || |||||||| || |||||||||||||| ||||| || || Sbjct: 92 aatatctacaatcgatatgtcaagcgtacttccaagttcatggctcacgatgaaaaggac 151 Query: 253 acctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaag 312 |||| ||||||||||| | || | |||||||||| ||||| |||||||| | ||| Sbjct: 152 tcctgtaacatcggcgatcgagtgaaattggatccttcaaggcctttgagcaagcataag 211 Query: 313 cattggattgtt 324 |||||||||||| Sbjct: 212 cattggattgtt 223
>ref|NM_103830.2| Arabidopsis thaliana EMB1129; structural constituent of ribosome (EMB1129) mRNA, complete cds Length = 831 Score = 83.8 bits (42), Expect = 1e-12 Identities = 156/194 (80%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 ||||| |||||||||||||| || || || ||||| || || || | |||||||||||| Sbjct: 138 gtggtatcgaacaagatgcaaaaatctgtagtggtcgccgtcgatagactcttccacaac 197 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacgaggccgag 252 || | ||||| ||||||||||| || || ||||| |||||||| |||||||| || Sbjct: 198 aaaatctacaatcgctacgtcaaacgaacttccaaattcatggctcacgacgacaaagac 257 Query: 253 acctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaag 312 |||||||||||||||| | || | | | ||||| || ||||| |||||||| || ||| Sbjct: 258 gcctgcaacatcggcgatcgagtgaagttagatccatcaaggcctttgagcaagaataag 317 Query: 313 cattggattgttgc 326 |||||||||||||| Sbjct: 318 cattggattgttgc 331
>gb|BT005147.1| Arabidopsis thaliana clone U50950 putative 40S ribosomal protein S17 (At1g49400) mRNA, complete cds Length = 382 Score = 83.8 bits (42), Expect = 1e-12 Identities = 156/194 (80%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 ||||| |||||||||||||| || || || ||||| || || || | |||||||||||| Sbjct: 22 gtggtatcgaacaagatgcaaaaatctgtagtggtcgccgtcgatagactcttccacaac 81 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacgaggccgag 252 || | ||||| ||||||||||| || || ||||| |||||||| |||||||| || Sbjct: 82 aaaatctacaatcgctacgtcaaacgaacttccaaattcatggctcacgacgacaaagac 141 Query: 253 acctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaag 312 |||||||||||||||| | || | | | ||||| || ||||| |||||||| || ||| Sbjct: 142 gcctgcaacatcggcgatcgagtgaagttagatccatcaaggcctttgagcaagaataag 201 Query: 313 cattggattgttgc 326 |||||||||||||| Sbjct: 202 cattggattgttgc 215
>dbj|AP002039.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB22 Length = 29694 Score = 83.8 bits (42), Expect = 1e-12 Identities = 93/110 (84%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 |||||||||||||| ||||||| |||||||||||| || || ||| | ||||||||||| Sbjct: 17935 gtggtgtcgaacaaaatgcagatgtcggtggtggtagccgtcgacagactcttccacaat 17994 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacga 242 || | ||||| || || |||||||| || |||||||||||||| ||||| Sbjct: 17995 aatatctacaatcgatatgtcaagcgtacttccaagttcatggctcacga 18044 Score = 48.1 bits (24), Expect = 0.060 Identities = 39/44 (88%) Strand = Plus / Plus Query: 281 tggatccttctaggccgttgagcaaaaacaagcattggattgtt 324 |||||||||| ||||| |||||||| | ||||||||||||||| Sbjct: 18247 tggatccttcaaggcctttgagcaagcataagcattggattgtt 18290
>dbj|AK118089.1| Arabidopsis thaliana At1g49400 mRNA for unknown protein, complete cds, clone: RAFL19-34-E13 Length = 829 Score = 83.8 bits (42), Expect = 1e-12 Identities = 156/194 (80%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 ||||| |||||||||||||| || || || ||||| || || || | |||||||||||| Sbjct: 138 gtggtatcgaacaagatgcaaaaatctgtagtggtcgccgtcgatagactcttccacaac 197 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacgaggccgag 252 || | ||||| ||||||||||| || || ||||| |||||||| |||||||| || Sbjct: 198 aaaatctacaatcgctacgtcaaacgaacttccaaattcatggctcacgacgacaaagac 257 Query: 253 acctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaag 312 |||||||||||||||| | || | | | ||||| || ||||| |||||||| || ||| Sbjct: 258 gcctgcaacatcggcgatcgagtgaagttagatccatcaaggcctttgagcaagaataag 317 Query: 313 cattggattgttgc 326 |||||||||||||| Sbjct: 318 cattggattgttgc 331
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence Length = 125021 Score = 65.9 bits (33), Expect = 3e-07 Identities = 93/113 (82%) Strand = Plus / Minus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 ||||| |||||||||||||| || || || ||||| || || || | |||||||||||| Sbjct: 60732 gtggtatcgaacaagatgcaaaaatctgtagtggtcgccgtcgatagactcttccacaac 60673 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacga 245 || | ||||| ||||||||||| || || ||||| |||||||| |||||||| Sbjct: 60672 aaaatctacaatcgctacgtcaaacgaacttccaaattcatggctcacgacga 60620 Score = 48.1 bits (24), Expect = 0.060 Identities = 39/44 (88%) Strand = Plus / Minus Query: 283 gatccttctaggccgttgagcaaaaacaagcattggattgttgc 326 ||||| || ||||| |||||||| || ||||||||||||||||| Sbjct: 60445 gatccatcaaggcctttgagcaagaataagcattggattgttgc 60402
>emb|BX818605.1|CNS0AAWN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZF06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 706 Score = 63.9 bits (32), Expect = 1e-06 Identities = 92/112 (82%) Strand = Plus / Plus Query: 133 gtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggaccgcctcttccacaac 192 ||||| |||||||||||||| || || || ||||| || || || | |||||||||||| Sbjct: 126 gtggtatcgaacaagatgcaaaaatctgtagtggtcgccgtcgatagactcttccacaac 185 Query: 193 aaggtgtacaaccgctacgtcaagcgcacctccaagttcatggcgcacgacg 244 || | ||||| ||||||||||| || || ||||| |||||||| ||||||| Sbjct: 186 aaaatctacaatcgctacgtcaaacgaacttccaaattcatggctcacgacg 237 Score = 50.1 bits (25), Expect = 0.015 Identities = 61/73 (83%) Strand = Plus / Plus Query: 254 cctgcaacatcggcgacagggttaggctggatccttctaggccgttgagcaaaaacaagc 313 |||||||||||||||| | || | | | ||||| || ||||| |||||||| || |||| Sbjct: 250 cctgcaacatcggcgatcgagtgaagttagatccatcaaggcctttgagcaagaataagc 309 Query: 314 attggattgttgc 326 ||||||||||||| Sbjct: 310 attggattgttgc 322
>emb|Y08858.1|NPS40RS17 N.plumbaginifolia mRNA for 40S ribosomal protein S17 Length = 564 Score = 61.9 bits (31), Expect = 4e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 118 ccggtggtgggtatcgtggtgtcgaacaagatgcagaagtcggtggtggtggcggtggac 177 ||||||||||| | || ||||| ||||| | |||||| || || |||||||| || || Sbjct: 32 ccggtggtgggaacagtagtgtcaaacaaaaggcagaaatcagtagtggtggctgtagat 91 Query: 178 cgcctcttccacaacaaggtgtacaaccgctacgtcaagcgcacctccaagttcatggc 236 | ||||||||||||||| | ||||| ||||| || ||||||||||| || |||||||| Sbjct: 92 agactcttccacaacaagctttacaatcgctatgtgaagcgcacctctaaattcatggc 150
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 929 attctatctgaataatatattg 950 |||||||||||||||||||||| Sbjct: 592168 attctatctgaataatatattg 592147
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 44.1 bits (22), Expect = 0.93 Identities = 28/30 (93%) Strand = Plus / Minus Query: 146 agatgcagaagtcggtggtggtggcggtgg 175 ||||| |||||| ||||||||||||||||| Sbjct: 78232 agatggagaagttggtggtggtggcggtgg 78203
>ref|XM_001224812.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_07157) mRNA, complete cds Length = 804 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 tggcgcacgacgaggccgaga 253 ||||||||||||||||||||| Sbjct: 410 tggcgcacgacgaggccgaga 430
>gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, complete sequence Length = 138097 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 aaaaacaagcattggattgtt 324 ||||||||||||||||||||| Sbjct: 9906 aaaaacaagcattggattgtt 9886
>gb|AC090186.7| Homo sapiens chromosome 8, clone RP11-11C20, complete sequence Length = 143753 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 aaaaacaagcattggattgtt 324 ||||||||||||||||||||| Sbjct: 55391 aaaaacaagcattggattgtt 55411
>gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, complete sequence Length = 214530 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 423 ctgaagatccccagagcccaacaca 447 |||||||||||||||||||| |||| Sbjct: 75178 ctgaagatccccagagcccagcaca 75154 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 156,925,331 Number of extensions: 8943018 Number of successful extensions: 206908 Number of sequences better than 10.0: 26 Number of HSP's gapped: 206898 Number of HSP's successfully gapped: 38 Length of query: 977 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 954 Effective length of database: 18,503,978,556 Effective search space: 17652795542424 Effective search space used: 17652795542424 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)