ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf132b21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q3A2E7:TRMD_PELCD tRNA - Pelobacter carbinolicus (strain DSM 238... 33 1.2
2Q2EEX7:FTSH_HELSJ Cell division protease ftsH homolog - Helicosp... 32 4.6

>Q3A2E7:TRMD_PELCD tRNA - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)|
          Length = 247
 Score = 33.5 bits (75), Expect = 1.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 643 SVFRALVHITDHHLRSWFCRQHHLTHGLPF 732
           +V R LV IT HHLR W   +H +T  +P+
Sbjct: 25  AVKRGLVQITAHHLRDWAEGKHQITDDVPY 54



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>Q2EEX7:FTSH_HELSJ Cell division protease ftsH homolog - Helicosporidium sp. subsp.|
           Simulium jonesii (Green alga)
          Length = 1460

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 608 YHQPASTLLFFSPFFVRWFT*LIIISVLGFAGNIISLMVFLFTTVSTLNFTVLH 769
           Y+Q  + L F+  FFV WF  + + S+L F    IS+   L  ++  +   ++H
Sbjct: 659 YYQDGNYLKFY--FFVSWFLLIELFSILAFMQIFISIFYILRKSIGEIIIELMH 710


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 158,460,005
Number of extensions: 3426397
Number of successful extensions: 8624
Number of sequences better than 10.0: 2
Number of HSP's gapped: 8616
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 189
Effective length of database: 69,691,104
Effective search space: 13171618656
Effective search space used: 13171618656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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