ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf139e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P20930:FILA_HUMAN Filaggrin - Homo sapiens (Human) 29 8.1
2Q06551:ERFB_YEAST Palmitoyltransferase ERF2 - Saccharomyces cere... 29 8.1
3O54751:CRX_MOUSE Cone-rod homeobox protein - Mus musculus (Mouse) 29 8.1

>P20930:FILA_HUMAN Filaggrin - Homo sapiens (Human)|
          Length = 4061
 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 147  SPHD*SSGSKHALGSKRERGQHHAQERGQGPKEVSH 40
            S H+  +G  H+  S R+ G HHA+    G    SH
Sbjct: 2284 SHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSH 2319



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 147  SPHD*SSGSKHALGSKRERGQHHAQERGQGPKEVSH 40
            S H+  +G  H+  S R+ G HHA+    G    SH
Sbjct: 3580 SHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSH 3615



to top

>Q06551:ERFB_YEAST Palmitoyltransferase ERF2 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 359

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -1

Query: 355 VVEHHDVYIDTMYTLGKRTYSFFTVYVYISVIESVDLV 242
           V +HH ++++    +GKR Y FF +++  +++ SV L+
Sbjct: 198 VHDHHCIWVNNC--IGKRNYRFFLIFLLGAILSSVILL 233



to top

>O54751:CRX_MOUSE Cone-rod homeobox protein - Mus musculus (Mouse)|
          Length = 299

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 124 QQTRPGQQTRARPASR-TGTWPR 59
           QQ  PG QT+ARPA R  GT PR
Sbjct: 104 QQQPPGAQTKARPAKRKAGTSPR 126


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 92,070,231
Number of extensions: 2076834
Number of successful extensions: 4667
Number of sequences better than 10.0: 3
Number of HSP's gapped: 4666
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 100,686,439
Length adjustment: 105
Effective length of query: 65
Effective length of database: 71,885,464
Effective search space: 4672555160
Effective search space used: 4672555160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top