ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf139d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001069477.1| Oryza sativa (japonica cultivar-group) Os09g... 232 2e-57
2dbj|AK069895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 2e-57
3emb|CT832609.1| Oryza sativa (indica cultivar-group) cDNA clone:... 224 5e-55
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 105 3e-19
5dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 105 3e-19
6dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.070
7emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom... 46 0.28
8gb|DQ366737.1| Uncultured Prochlorococcus marinus clone HOT0M-5C... 44 1.1
9emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; se... 44 1.1
10gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome 42 4.3
11gb|AE005820.1| Caulobacter crescentus CB15 section 146 of 359 of... 42 4.3
12dbj|AP006146.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 4.3
13emb|AL627075.13| Mouse DNA sequence from clone RP23-166L2 on chr... 42 4.3

>ref|NM_001069477.1| Oryza sativa (japonica cultivar-group) Os09g0346900 (Os09g0346900)
           mRNA, complete cds
          Length = 1283
 Score =  232 bits (117), Expect = 2e-57
 Identities = 345/421 (81%)
 Strand = Plus / Plus

                                                                       
Query: 402 tttctccggatttacctaaagagactacagataaggttcctgaatttgaagacttgcagt 461
           |||| ||||||||||||| ||| |  | ||||||| |||||||| |||||||| ||||||
Sbjct: 422 tttcgccggatttacctatagacaacatagataagcttcctgaaattgaagacatgcagt 481

                                                                       
Query: 462 ttgaggctaagtcatcaaaggattctgcatggtacgacgttgcccttttcttggcacaca 521
           | ||||||| ||| |||||||||| ||| ||||| ||  | |||  |||||| ||| |||
Sbjct: 482 tcgaggctaggtcttcaaaggattttgcttggtatgatatcgccactttcttagcataca 541

                                                                       
Query: 522 ggaagacaagtttgggagaagttgaagtccgggtgaggttcgtcggatatggggctgaag 581
           |||||  |||||  || ||| |||||||||| ||||| ||    |||| |||||||||||
Sbjct: 542 ggaagttaagttctggtgaatttgaagtccgagtgagatttcaaggatttggggctgaag 601

                                                                       
Query: 582 aagatgagtgggtgaatgtcaggaaggctgtccgccagcaatccattccattggaatcct 641
           | ||||| ||| | |||||| |||||||| |||||| ||||||||| || |||||||| |
Sbjct: 602 aggatgaatggatcaatgtccggaaggctatccgcctgcaatccatcccgttggaatcat 661

                                                                       
Query: 642 cagaatgccgaagcattgtcaaaggagatcttgtcctgtgtttcaaggagagcaatgatg 701
           ||||||||  |  |||     ||||||| |||||||| ||||||||||||||||||||||
Sbjct: 662 cagaatgcaaactcatcagggaaggagaccttgtcctctgtttcaaggagagcaatgatg 721

                                                                       
Query: 702 aagcactgcatttcgatgcgcacattgtggatgtccagtggaaacaacatgatataaggg 761
           ||||| ||||||||||||||||  || ||||  ||||| |||||||||||||||||||||
Sbjct: 722 aagcattgcatttcgatgcgcatgttctggaaatccagcggaaacaacatgatataaggg 781

                                                                       
Query: 762 gatgcagatgcctcttcaccgttgaatatgatcatgatcaaagccaggagatggtgaacc 821
           | ||||||||  |||||   || ||||| || ||||||  || |||||||| ||||||||
Sbjct: 782 ggtgcagatgtgtcttccttgtcgaatacgaccatgatggaacccaggagagggtgaacc 841

            
Query: 822 t 822
           |
Sbjct: 842 t 842



 Score =  174 bits (88), Expect = 5e-40
 Identities = 232/280 (82%)
 Strand = Plus / Plus

                                                                       
Query: 27  gacctcgccgccggccagcgatggagcgacgatccagcacccgcttctcgccctccgaga 86
           |||||||||| |||| ||  |||||||| ||||| |||   |||||| |||| |||||||
Sbjct: 47  gacctcgccggcggcgagaaatggagcggcgatcgagcgttcgcttcgcgccatccgaga 106

                                                                       
Query: 87  ttgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtttct 146
           ||||||||||||||||||||||| || | ||||| |   ||||||||| ||| | |||||
Sbjct: 107 ttgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattttct 166

                                                                       
Query: 147 gccagaagcttgtagaagaatttaatcgttctgcagctcgagtcggaagtagagctctac 206
           ||| |||||| | ||||||||||||| ||||| |||  ||||| ||||||| ||| ||||
Sbjct: 167 gccggaagctcgcagaagaatttaattgttctccaggccgagttggaagtaaagcactac 226

                                                                       
Query: 207 aggctacacaggttcaaggatggttccttgataagctccctgcatcaactcctaaacctg 266
           |||||   |||||||||| |||||||| | | ||| ||||||||||||||  || |||| 
Sbjct: 227 aggctgtgcaggttcaagaatggttccgtcaaaagttccctgcatcaactgttatacctc 286

                                                   
Query: 267 cttgtttgcctgctacttctgaagaaaagcctttagcctc 306
           ||||||||||| ||   |||||||||||| ||||||||||
Sbjct: 287 cttgtttgcctactggctctgaagaaaaggctttagcctc 326



to top

>dbj|AK069895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039B22, full
           insert sequence
          Length = 1285

 Score =  232 bits (117), Expect = 2e-57
 Identities = 345/421 (81%)
 Strand = Plus / Plus

                                                                       
Query: 402 tttctccggatttacctaaagagactacagataaggttcctgaatttgaagacttgcagt 461
           |||| ||||||||||||| ||| |  | ||||||| |||||||| |||||||| ||||||
Sbjct: 424 tttcgccggatttacctatagacaacatagataagcttcctgaaattgaagacatgcagt 483

                                                                       
Query: 462 ttgaggctaagtcatcaaaggattctgcatggtacgacgttgcccttttcttggcacaca 521
           | ||||||| ||| |||||||||| ||| ||||| ||  | |||  |||||| ||| |||
Sbjct: 484 tcgaggctaggtcttcaaaggattttgcttggtatgatatcgccactttcttagcataca 543

                                                                       
Query: 522 ggaagacaagtttgggagaagttgaagtccgggtgaggttcgtcggatatggggctgaag 581
           |||||  |||||  || ||| |||||||||| ||||| ||    |||| |||||||||||
Sbjct: 544 ggaagttaagttctggtgaatttgaagtccgagtgagatttcaaggatttggggctgaag 603

                                                                       
Query: 582 aagatgagtgggtgaatgtcaggaaggctgtccgccagcaatccattccattggaatcct 641
           | ||||| ||| | |||||| |||||||| |||||| ||||||||| || |||||||| |
Sbjct: 604 aggatgaatggatcaatgtccggaaggctatccgcctgcaatccatcccgttggaatcat 663

                                                                       
Query: 642 cagaatgccgaagcattgtcaaaggagatcttgtcctgtgtttcaaggagagcaatgatg 701
           ||||||||  |  |||     ||||||| |||||||| ||||||||||||||||||||||
Sbjct: 664 cagaatgcaaactcatcagggaaggagaccttgtcctctgtttcaaggagagcaatgatg 723

                                                                       
Query: 702 aagcactgcatttcgatgcgcacattgtggatgtccagtggaaacaacatgatataaggg 761
           ||||| ||||||||||||||||  || ||||  ||||| |||||||||||||||||||||
Sbjct: 724 aagcattgcatttcgatgcgcatgttctggaaatccagcggaaacaacatgatataaggg 783

                                                                       
Query: 762 gatgcagatgcctcttcaccgttgaatatgatcatgatcaaagccaggagatggtgaacc 821
           | ||||||||  |||||   || ||||| || ||||||  || |||||||| ||||||||
Sbjct: 784 ggtgcagatgtgtcttccttgtcgaatacgaccatgatggaacccaggagagggtgaacc 843

            
Query: 822 t 822
           |
Sbjct: 844 t 844



 Score =  174 bits (88), Expect = 5e-40
 Identities = 232/280 (82%)
 Strand = Plus / Plus

                                                                       
Query: 27  gacctcgccgccggccagcgatggagcgacgatccagcacccgcttctcgccctccgaga 86
           |||||||||| |||| ||  |||||||| ||||| |||   |||||| |||| |||||||
Sbjct: 49  gacctcgccggcggcgagaaatggagcggcgatcgagcgttcgcttcgcgccatccgaga 108

                                                                       
Query: 87  ttgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtttct 146
           ||||||||||||||||||||||| || | ||||| |   ||||||||| ||| | |||||
Sbjct: 109 ttgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattttct 168

                                                                       
Query: 147 gccagaagcttgtagaagaatttaatcgttctgcagctcgagtcggaagtagagctctac 206
           ||| |||||| | ||||||||||||| ||||| |||  ||||| ||||||| ||| ||||
Sbjct: 169 gccggaagctcgcagaagaatttaattgttctccaggccgagttggaagtaaagcactac 228

                                                                       
Query: 207 aggctacacaggttcaaggatggttccttgataagctccctgcatcaactcctaaacctg 266
           |||||   |||||||||| |||||||| | | ||| ||||||||||||||  || |||| 
Sbjct: 229 aggctgtgcaggttcaagaatggttccgtcaaaagttccctgcatcaactgttatacctc 288

                                                   
Query: 267 cttgtttgcctgctacttctgaagaaaagcctttagcctc 306
           ||||||||||| ||   |||||||||||| ||||||||||
Sbjct: 289 cttgtttgcctactggctctgaagaaaaggctttagcctc 328



to top

>emb|CT832609.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108G01, full
           insert sequence
          Length = 1069

 Score =  224 bits (113), Expect = 5e-55
 Identities = 344/421 (81%)
 Strand = Plus / Plus

                                                                       
Query: 402 tttctccggatttacctaaagagactacagataaggttcctgaatttgaagacttgcagt 461
           |||| ||||||||||||| ||| |  | ||||||| |||||||| |||||||| ||||||
Sbjct: 429 tttcgccggatttacctatagacaacatagataagcttcctgaaattgaagacatgcagt 488

                                                                       
Query: 462 ttgaggctaagtcatcaaaggattctgcatggtacgacgttgcccttttcttggcacaca 521
           | ||||||| ||| |||||||||| ||| ||||| ||  | |||  |||||| ||| |||
Sbjct: 489 tcgaggctaggtcttcaaaggattttgcttggtatgatatcgccactttcttagcataca 548

                                                                       
Query: 522 ggaagacaagtttgggagaagttgaagtccgggtgaggttcgtcggatatggggctgaag 581
           |||||  |||||  || ||| |||||||||| ||||| ||    |||| |||||||||||
Sbjct: 549 ggaagttaagttctggtgaatttgaagtccgagtgagatttcaaggatttggggctgaag 608

                                                                       
Query: 582 aagatgagtgggtgaatgtcaggaaggctgtccgccagcaatccattccattggaatcct 641
           | ||||| ||| | |||||| |||||||| |||||| ||||||||| || |||||||| |
Sbjct: 609 aggatgaatggatcaatgtccggaaggctatccgcctgcaatccatcccgttggaatcat 668

                                                                       
Query: 642 cagaatgccgaagcattgtcaaaggagatcttgtcctgtgtttcaaggagagcaatgatg 701
           ||||||||  |  |||     ||||||| |||||||| ||||||||||||||||||||||
Sbjct: 669 cagaatgcaaactcatcagggaaggagaccttgtcctctgtttcaaggagagcaatgatg 728

                                                                       
Query: 702 aagcactgcatttcgatgcgcacattgtggatgtccagtggaaacaacatgatataaggg 761
           ||||| ||||||||||||||||  || ||||  ||||| |||||||||| ||||||||||
Sbjct: 729 aagcattgcatttcgatgcgcatgttctggaaatccagcggaaacaacacgatataaggg 788

                                                                       
Query: 762 gatgcagatgcctcttcaccgttgaatatgatcatgatcaaagccaggagatggtgaacc 821
           | ||||||||  |||||   || ||||| || ||||||  || |||||||| ||||||||
Sbjct: 789 ggtgcagatgtgtcttccttgtcgaatacgaccatgatggaacccaggagagggtgaacc 848

            
Query: 822 t 822
           |
Sbjct: 849 t 849



 Score =  174 bits (88), Expect = 5e-40
 Identities = 232/280 (82%)
 Strand = Plus / Plus

                                                                       
Query: 27  gacctcgccgccggccagcgatggagcgacgatccagcacccgcttctcgccctccgaga 86
           |||||||||| |||| ||  |||||||| ||||| |||   |||||| |||| |||||||
Sbjct: 54  gacctcgccggcggcgagaaatggagcggcgatcgagcgttcgcttcgcgccatccgaga 113

                                                                       
Query: 87  ttgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtttct 146
           ||||||||||||||||||||||| || | ||||| |   ||||||||| ||| | |||||
Sbjct: 114 ttgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattttct 173

                                                                       
Query: 147 gccagaagcttgtagaagaatttaatcgttctgcagctcgagtcggaagtagagctctac 206
           ||| |||||| | ||||||||||||| ||||| |||  ||||| ||||||| ||| ||||
Sbjct: 174 gccggaagctcgcagaagaatttaattgttctccaggccgagttggaagtaaagcactac 233

                                                                       
Query: 207 aggctacacaggttcaaggatggttccttgataagctccctgcatcaactcctaaacctg 266
           |||||   |||||||||| |||||||| | | ||| ||||||||||||||  || |||| 
Sbjct: 234 aggctgtgcaggttcaagaatggttccgtcaaaagttccctgcatcaactgttatacctc 293

                                                   
Query: 267 cttgtttgcctgctacttctgaagaaaagcctttagcctc 306
           ||||||||||| ||   |||||||||||| ||||||||||
Sbjct: 294 cttgtttgcctactggctctgaagaaaaggctttagcctc 333



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score =  105 bits (53), Expect = 3e-19
 Identities = 77/85 (90%)
 Strand = Plus / Minus

                                                                            
Query: 687      aggagagcaatgatgaagcactgcatttcgatgcgcacattgtggatgtccagtggaaac 746
                |||||||||||||||||||| ||||||||||||||||  || ||||  ||||| ||||||
Sbjct: 10820434 aggagagcaatgatgaagcattgcatttcgatgcgcatgttctggaaatccagcggaaac 10820375

                                         
Query: 747      aacatgatataaggggatgcagatg 771
                |||||||||||||||| ||||||||
Sbjct: 10820374 aacatgatataagggggtgcagatg 10820350



 Score = 79.8 bits (40), Expect = 2e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                            
Query: 566      ggatatggggctgaagaagatgagtgggtgaatgtcaggaaggctgtccgccagcaatcc 625
                |||| |||||||||||| ||||| ||| | |||||| |||||||| |||||| |||||||
Sbjct: 10820730 ggatttggggctgaagaggatgaatggatcaatgtccggaaggctatccgcctgcaatcc 10820671

                                        
Query: 626      attccattggaatcctcagaatgc 649
                || || |||||||| |||||||||
Sbjct: 10820670 atcccgttggaatcatcagaatgc 10820647



 Score = 73.8 bits (37), Expect = 1e-09
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                            
Query: 214      acaggttcaaggatggttccttgataagctccctgcatcaactcctaaacctgcttgttt 273
                ||||||||||| |||||||| | | ||| ||||||||||||||  || |||| |||||||
Sbjct: 10822080 acaggttcaagaatggttccgtcaaaagttccctgcatcaactgttatacctccttgttt 10822021

                                                 
Query: 274      gcctgctacttctgaagaaaagcctttagcctc 306
                |||| ||   |||||||||||| ||||||||||
Sbjct: 10822020 gcctactggctctgaagaaaaggctttagcctc 10821988



 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                            
Query: 84       agattgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtt 143
                |||||||||||||||||||||||||| || | ||||| |   ||||||||| ||| | ||
Sbjct: 10823643 agattgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattt 10823584

                                            
Query: 144      tctgccagaagcttgtagaagaatttaa 171
                |||||| |||||| | ||||||||||||
Sbjct: 10823583 tctgccggaagctcgcagaagaatttaa 10823556



 Score = 48.1 bits (24), Expect = 0.070
 Identities = 87/108 (80%)
 Strand = Plus / Plus

                                                                            
Query: 545      gaagtccgggtgaggttcgtcggatatggggctgaagaagatgagtgggtgaatgtcagg 604
                |||||||| ||||||||    |||| |||||||||||| ||||| ||| | |||||| ||
Sbjct: 10780350 gaagtccgagtgaggtttcaaggatttggggctgaagaggatgaatggatcaatgtccgg 10780409

                                                                
Query: 605      aaggctgtccgccagcaatccattccattggaatcctcagaatgccga 652
                |||||| |||| | | ||||||| ||  | ||||| | ||||||||||
Sbjct: 10780410 aaggctatccgactgtaatccatcccgctagaatcatgagaatgccga 10780457



 Score = 48.1 bits (24), Expect = 0.070
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 687      aggagagcaatgatgaagcactgcattt 714
                |||||||||||||||||||| |||||||
Sbjct: 10780670 aggagagcaatgatgaagcattgcattt 10780697



to top

>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score =  105 bits (53), Expect = 3e-19
 Identities = 77/85 (90%)
 Strand = Plus / Minus

                                                                         
Query: 687   aggagagcaatgatgaagcactgcatttcgatgcgcacattgtggatgtccagtggaaac 746
             |||||||||||||||||||| ||||||||||||||||  || ||||  ||||| ||||||
Sbjct: 44157 aggagagcaatgatgaagcattgcatttcgatgcgcatgttctggaaatccagcggaaac 44098

                                      
Query: 747   aacatgatataaggggatgcagatg 771
             |||||||||||||||| ||||||||
Sbjct: 44097 aacatgatataagggggtgcagatg 44073



 Score = 79.8 bits (40), Expect = 2e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                         
Query: 566   ggatatggggctgaagaagatgagtgggtgaatgtcaggaaggctgtccgccagcaatcc 625
             |||| |||||||||||| ||||| ||| | |||||| |||||||| |||||| |||||||
Sbjct: 44453 ggatttggggctgaagaggatgaatggatcaatgtccggaaggctatccgcctgcaatcc 44394

                                     
Query: 626   attccattggaatcctcagaatgc 649
             || || |||||||| |||||||||
Sbjct: 44393 atcccgttggaatcatcagaatgc 44370



 Score = 73.8 bits (37), Expect = 1e-09
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                         
Query: 214   acaggttcaaggatggttccttgataagctccctgcatcaactcctaaacctgcttgttt 273
             ||||||||||| |||||||| | | ||| ||||||||||||||  || |||| |||||||
Sbjct: 45803 acaggttcaagaatggttccgtcaaaagttccctgcatcaactgttatacctccttgttt 45744

                                              
Query: 274   gcctgctacttctgaagaaaagcctttagcctc 306
             |||| ||   |||||||||||| ||||||||||
Sbjct: 45743 gcctactggctctgaagaaaaggctttagcctc 45711



 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                         
Query: 84    agattgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtt 143
             |||||||||||||||||||||||||| || | ||||| |   ||||||||| ||| | ||
Sbjct: 47366 agattgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattt 47307

                                         
Query: 144   tctgccagaagcttgtagaagaatttaa 171
             |||||| |||||| | ||||||||||||
Sbjct: 47306 tctgccggaagctcgcagaagaatttaa 47279



 Score = 48.1 bits (24), Expect = 0.070
 Identities = 87/108 (80%)
 Strand = Plus / Plus

                                                                        
Query: 545  gaagtccgggtgaggttcgtcggatatggggctgaagaagatgagtgggtgaatgtcagg 604
            |||||||| ||||||||    |||| |||||||||||| ||||| ||| | |||||| ||
Sbjct: 4073 gaagtccgagtgaggtttcaaggatttggggctgaagaggatgaatggatcaatgtccgg 4132

                                                            
Query: 605  aaggctgtccgccagcaatccattccattggaatcctcagaatgccga 652
            |||||| |||| | | ||||||| ||  | ||||| | ||||||||||
Sbjct: 4133 aaggctatccgactgtaatccatcccgctagaatcatgagaatgccga 4180



 Score = 48.1 bits (24), Expect = 0.070
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 687  aggagagcaatgatgaagcactgcattt 714
            |||||||||||||||||||| |||||||
Sbjct: 4393 aggagagcaatgatgaagcattgcattt 4420



to top

>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 48.1 bits (24), Expect = 0.070
 Identities = 87/108 (80%)
 Strand = Plus / Plus

                                                                          
Query: 545    gaagtccgggtgaggttcgtcggatatggggctgaagaagatgagtgggtgaatgtcagg 604
              |||||||| ||||||||    |||| |||||||||||| ||||| ||| | |||||| ||
Sbjct: 116968 gaagtccgagtgaggtttcaaggatttggggctgaagaggatgaatggatcaatgtccgg 117027

                                                              
Query: 605    aaggctgtccgccagcaatccattccattggaatcctcagaatgccga 652
              |||||| |||| | | ||||||| ||  | ||||| | ||||||||||
Sbjct: 117028 aaggctatccgactgtaatccatcccgctagaatcatgagaatgccga 117075



 Score = 48.1 bits (24), Expect = 0.070
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 687    aggagagcaatgatgaagcactgcattt 714
              |||||||||||||||||||| |||||||
Sbjct: 117288 aggagagcaatgatgaagcattgcattt 117315



to top

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 46.1 bits (23), Expect = 0.28
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 717    atgcgcacattgtggatgtccag 739
              |||||||||||||||||||||||
Sbjct: 303305 atgcgcacattgtggatgtccag 303327



to top

>gb|DQ366737.1| Uncultured Prochlorococcus marinus clone HOT0M-5C8 genomic sequence
          Length = 20051

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 401  ctttctccggatttacctaaag 422
            ||||||||||||||||||||||
Sbjct: 9071 ctttctccggatttacctaaag 9092



to top

>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5
          Length = 262202

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 401   ctttctccggatttacctaaag 422
             ||||||||||||||||||||||
Sbjct: 59326 ctttctccggatttacctaaag 59305



to top

>gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome
          Length = 2708355

 Score = 42.1 bits (21), Expect = 4.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 614     cgccagcaatccattccattg 634
               |||||||||||||||||||||
Sbjct: 2258477 cgccagcaatccattccattg 2258457



to top

>gb|AE005820.1| Caulobacter crescentus CB15 section 146 of 359 of the complete genome
          Length = 14021

 Score = 42.1 bits (21), Expect = 4.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   acctcgccgccggccagcgat 48
            |||||||||||||||||||||
Sbjct: 9970 acctcgccgccggccagcgat 9990



to top

>dbj|AP006146.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34M22, TM0282,
             complete sequence
          Length = 107979

 Score = 42.1 bits (21), Expect = 4.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 576   ctgaagaagatgagtgggtgaatgt 600
             ||||||||||||||||||| |||||
Sbjct: 79169 ctgaagaagatgagtgggttaatgt 79193



to top

>emb|AL627075.13| Mouse DNA sequence from clone RP23-166L2 on chromosome 4, complete
             sequence
          Length = 194998

 Score = 42.1 bits (21), Expect = 4.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 110   tcagacaaaaaaggggaagtcttgg 134
             |||||||||||||||||||| ||||
Sbjct: 70957 tcagacaaaaaaggggaagtattgg 70981


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 196,466,569
Number of extensions: 10097279
Number of successful extensions: 243951
Number of sequences better than 10.0: 13
Number of HSP's gapped: 243943
Number of HSP's successfully gapped: 30
Length of query: 1143
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1120
Effective length of database: 18,503,978,556
Effective search space: 20724455982720
Effective search space used: 20724455982720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top