ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf139a07 |
|---|---|
| Clone Library Name | barley_pub |
>Q9D975:SRXN1_MOUSE Sulfiredoxin-1 - Mus musculus (Mouse)| Length = 136 Score = 56.6 bits (135), Expect = 1e-07 Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Frame = +3 Query: 228 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVP-IDVLEVDGV-----YYGFSG 389 V +P+ + RPL DP KVQ L+D+I VP IDVL + G YY F G Sbjct: 40 VHNVPIAVLIRPLPSVL--DPAKVQSLVDTILADPDSVPPIDVLWIKGAQGGDYYYSFGG 97 Query: 390 CHRYEAHQRLGLPTIRCKVRRGTKETLR 473 CHRY A+Q+L TI K+ R T LR Sbjct: 98 CHRYAAYQQLQRETIPAKLVRSTLSDLR 125
>Q9BYN0:SRXN1_HUMAN Sulfiredoxin-1 - Homo sapiens (Human)| Length = 137 Score = 56.6 bits (135), Expect = 1e-07 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Frame = +3 Query: 228 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVP-IDVLEVDGV-----YYGFSG 389 V +PL + RPL DP KVQ L+D+IR VP IDVL + G +Y F G Sbjct: 41 VHNVPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGG 98 Query: 390 CHRYEAHQRLGLPTIRCKVRRGTKETLR 473 CHRY A+Q+L TI K+ + T LR Sbjct: 99 CHRYAAYQQLQRETIPAKLVQSTLSDLR 126
>Q9VX10:SRX_DROME Putative sulfiredoxin - Drosophila melanogaster (Fruit fly)| Length = 162 Score = 53.9 bits (128), Expect = 6e-07 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 8/82 (9%) Frame = +3 Query: 237 IPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQ---VPIDVLEVDG-----VYYGFSGC 392 +P+ I+RP+ D +KVQ LM++I+ + PID+L + G Y+ F GC Sbjct: 66 VPMSVIQRPIPSVL--DEQKVQSLMETIKNETSEDEVPPIDLLWISGSEGGDYYFSFGGC 123 Query: 393 HRYEAHQRLGLPTIRCKVRRGT 458 HR+EA++RL PTI+ K+ + T Sbjct: 124 HRFEAYKRLQRPTIKAKLVKST 145
>P36077:SRX1_YEAST Sulfiredoxin - Saccharomyces cerevisiae (Baker's yeast)| Length = 127 Score = 46.6 bits (109), Expect = 1e-04 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 28/108 (25%) Frame = +3 Query: 234 EIPLEDIRRPLMRTRANDPEKVQELMDSIRVI------------------GLQVPIDVLE 359 EIPL +IRRPL DP+K+ ++ +++ I G P+DVL Sbjct: 12 EIPLSEIRRPLAPVL--DPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLG 69 Query: 360 V----DGVYYGFSGCHRYEAHQRLGLPT------IRCKVRRGTKETLR 473 V +YY F GCHR +A+ R T +RC+V T +R Sbjct: 70 VRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIR 117
>P0A152:PARB_PSEPU Probable chromosome-partitioning protein parB - Pseudomonas putida| Length = 290 Score = 40.4 bits (93), Expect = 0.007 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = +3 Query: 228 VMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEV-DGVYYGFSGCHRY 401 + +P+E ++R + R + DPE ++EL SIR G+ PI V + D Y +G R+ Sbjct: 36 LQHLPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRW 95 Query: 402 EAHQRLGLPTIRCKVR 449 A Q+ GL TI VR Sbjct: 96 RATQQAGLDTIPAMVR 111
>P0A151:PARB_PSEPK Probable chromosome-partitioning protein parB - Pseudomonas putida| (strain KT2440) Length = 290 Score = 40.4 bits (93), Expect = 0.007 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = +3 Query: 228 VMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEV-DGVYYGFSGCHRY 401 + +P+E ++R + R + DPE ++EL SIR G+ PI V + D Y +G R+ Sbjct: 36 LQHLPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRW 95 Query: 402 EAHQRLGLPTIRCKVR 449 A Q+ GL TI VR Sbjct: 96 RATQQAGLDTIPAMVR 111
>Q9RZE7:PARB2_DEIRA Probable chromosome 2-partitioning protein parB - Deinococcus| radiodurans Length = 293 Score = 40.4 bits (93), Expect = 0.007 Identities = 25/66 (37%), Positives = 36/66 (54%) Frame = +3 Query: 276 RANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKVRRG 455 R+ D E++ EL +SIR G+ P+ V VDG Y +G R+ A Q GL + VR+ Sbjct: 46 RSFDLERLSELAESIRAHGVLQPLLVRSVDGQYEIVAGERRWRAAQLAGLAEVPVVVRQL 105 Query: 456 TKETLR 473 + E R Sbjct: 106 SNEQAR 111
>Q9URV9:SRX1_SCHPO Putative sulfiredoxin - Schizosaccharomyces pombe (Fission yeast)| Length = 124 Score = 39.7 bits (91), Expect = 0.012 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 19/101 (18%) Frame = +3 Query: 228 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIR---------------VIGLQVPIDVLEV 362 ++E+ + ++ RP+ D KV +M+++ G P+DVL Sbjct: 12 IVELDMSELIRPIPPVL--DMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPPVDVLTF 69 Query: 363 DG----VYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLR 473 Y+ F GCHR AH G +RCK+ + TLR Sbjct: 70 KKSGKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLR 110
>Q9Z7M0:PARB_CHLPN Probable chromosome-partitioning protein parB - Chlamydia| pneumoniae (Chlamydophila pneumoniae) Length = 286 Score = 35.4 bits (80), Expect = 0.23 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Frame = +3 Query: 228 VMEIPLEDIR-RPLMRTRANDPEKVQELMDSIRVIGLQVPIDVLEV---DGVYYG--FSG 389 ++E+ ++DIR P R E++QEL+ SI+ +GL P V E+ D V Y +G Sbjct: 10 IIEVAIDDIRVSPFQPRRVFSNEELQELIASIKAVGLIHPPVVREICTGDRVLYYELIAG 69 Query: 390 CHRYEAHQRLGLPTI 434 R+ A Q G TI Sbjct: 70 ERRWRAMQLAGATTI 84
>Q52KI8:SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 - Mus musculus (Mouse)| Length = 946 Score = 32.7 bits (73), Expect = 1.5 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Frame = +2 Query: 284 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 463 RS + + P H P R+ SR R P R SP RTP + PPR +R Sbjct: 279 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 338 Query: 464 NTAVS----RYSLSFVGWSVASS 520 + + R S S G S +SS Sbjct: 339 SRSPGRRRRRSSASLSGSSSSSS 361
>Q5R5Q2:SRRM1_PONPY Serine/arginine repetitive matrix protein 1 - Pongo pygmaeus| (Orangutan) Length = 917 Score = 32.3 bits (72), Expect = 1.9 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Frame = +2 Query: 284 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 463 RS + + P H P R+ SR R P R SP RTP + PPR +R Sbjct: 281 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340 Query: 464 NTAV----SRYSLSFVGWSVASS 520 + + R S S G S +SS Sbjct: 341 SRSPVRRRRRSSASLSGSSSSSS 363
>Q8IYB3:SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 - Homo sapiens (Human)| Length = 904 Score = 32.3 bits (72), Expect = 1.9 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Frame = +2 Query: 284 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 463 RS + + P H P R+ SR R P R SP RTP + PPR +R Sbjct: 281 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340 Query: 464 NTAV----SRYSLSFVGWSVASS 520 + + R S S G S +SS Sbjct: 341 SRSPVRRRRRSSASLSGSSSSSS 363
>Q9JXP5:PARB_NEIMB Probable chromosome-partitioning protein parB - Neisseria| meningitidis serogroup B Length = 286 Score = 32.3 bits (72), Expect = 1.9 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +3 Query: 219 GPVVMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGC 392 G + + ++DIR + R D E +QEL DSI+ G+ P+ V E Y +G Sbjct: 25 GDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGE 84 Query: 393 HRYEAHQRLGLPTIRCKVRRGTKET 467 R+ A Q GL I ++ + ET Sbjct: 85 RRWRAAQIAGLTEIPAVIKTISDET 109
>Q9JW77:PARB_NEIMA Probable chromosome-partitioning protein parB - Neisseria| meningitidis serogroup A Length = 286 Score = 32.3 bits (72), Expect = 1.9 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +3 Query: 219 GPVVMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGC 392 G + + ++DIR + R D E +QEL DSI+ G+ P+ V E Y +G Sbjct: 25 GDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGE 84 Query: 393 HRYEAHQRLGLPTIRCKVRRGTKET 467 R+ A Q GL I ++ + ET Sbjct: 85 RRWRAAQIAGLTEIPAVIKTISDET 109
>Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 - Mus musculus (Mouse)| Length = 2703 Score = 32.0 bits (71), Expect = 2.5 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +2 Query: 329 RPPSTYRRAGSRRSLLRILWMP--SIRGSPAPRTPNHPLQSPPRDQRNTAVSRYSLSFVG 502 R P GS R+ + +L S+ P PR P+HP S P N A SR +L+ Sbjct: 2083 RSPGMLEPLGSARTPMSVLQQTGGSMMDGPGPRIPDHPRSSVP---ENHAQSRIALALTA 2139 Query: 503 WSVASS 520 S+ ++ Sbjct: 2140 ISLGTA 2145
>Q5ZMJ9:SRRM1_CHICK Serine/arginine repetitive matrix protein 1 - Gallus gallus| (Chicken) Length = 888 Score = 31.6 bits (70), Expect = 3.3 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = +2 Query: 284 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 463 RS + + + P H P R+ SRR P R SP RTP + PPR +R Sbjct: 282 RSKSRSRSRSRSPSHSRPRRRHRSRSRRRP-----SPRRRPSPRRRTPPRRMPPPPRHRR 336 Query: 464 NTAV----SRYSLSFVGWSVASS 520 + + R S S G S +SS Sbjct: 337 SRSPVRRRRRSSASLSGSSSSSS 359
>P10021:TNPA_BACTU Transposase for transposon Tn4430 - Bacillus thuringiensis| Length = 987 Score = 30.8 bits (68), Expect = 5.7 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 344 RYLEADDTDAVHELLHLLRIVSTRSH*RPTDIFQRDLHHHRAF---LLRVAQWEEAS 183 +++ DD + L + R+H R DIF HH+AF L+ +W E S Sbjct: 443 KHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSRHHKAFDDYLIPYDEWNEVS 499
>P78926:MAP1_SCHPO Pheromone receptor transcription activator - Schizosaccharomyces| pombe (Fission yeast) Length = 398 Score = 30.8 bits (68), Expect = 5.7 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Frame = +2 Query: 311 GQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTP----------NHPLQSPPRDQ 460 GQH + PPSTY+ RRSL + S P+TP + PL PPRD+ Sbjct: 264 GQHSVNSPPSTYKH---RRSLNK-----SFATRSEPQTPRKNKIRDSLQSSPLNFPPRDR 315
>Q6YLN1:CYB_OKAJO Cytochrome b - Okapia johnstoni (Okapi)| Length = 379 Score = 30.8 bits (68), Expect = 5.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLSTPP 266
>Q9TDQ5:CYB_MEGVU Cytochrome b - Megamuntiacus vuquangensis (Giant muntjac)| Length = 379 Score = 30.8 bits (68), Expect = 5.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266
>O78783:CYB_HEMJE Cytochrome b - Hemitragus jemlahicus (Himalayan tahr)| Length = 379 Score = 30.8 bits (68), Expect = 5.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266
>O78784:CYB_CAPSI Cytochrome b - Capra sibirica (Siberian ibex)| Length = 380 Score = 30.8 bits (68), Expect = 5.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266
>Q9B6F0:CYB_THRSW Cytochrome b - Thryonomys swinderianus (Greater cane rat)| Length = 379 Score = 30.4 bits (67), Expect = 7.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 LL +L+ P I G P TP +PL +PP Sbjct: 240 LLLVLFFPDILGDPDNYTPANPLNTPP 266
>Q9THD6:CYB_ORYAF Cytochrome b - Orycteropus afer (Aardvark)| Length = 379 Score = 30.4 bits (67), Expect = 7.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 LL +L+ P + G P+ TP +PL +PP Sbjct: 240 LLLVLFSPDLLGDPSNYTPANPLSTPP 266
>Q24JP5:T132A_HUMAN Transmembrane protein 132A precursor - Homo sapiens (Human)| Length = 1023 Score = 30.0 bits (66), Expect = 9.6 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Frame = +2 Query: 296 GAGAHGQ--HPCHRPPSTYRRAGSRRSLLR-ILWMPSIRGS-PAPRTPNHPLQSPPRDQR 463 GAGA G H PP RR R L W+ S PAP P+ P SPP + Sbjct: 730 GAGAEGLPLHVALHPPEPCRRGRHRVPLASGTAWLGLPPASTPAPALPSSPAWSPPATEA 789 Query: 464 NTAVSRYSLSFVG 502 R VG Sbjct: 790 TMGGKRQVAGSVG 802
>Q6MRK9:RF1_BDEBA Peptide chain release factor 1 - Bdellovibrio bacteriovorus| Length = 357 Score = 30.0 bits (66), Expect = 9.6 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +3 Query: 231 MEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVPIDV 353 ++IP+ D+R MR++ + + V ++RV+ L IDV Sbjct: 213 IKIPMSDVRIETMRSQGSGGQSVNRTESAVRVVHLPTGIDV 253
>Q9LXZ3:FB204_ARATH Putative F-box protein At3g56470 - Arabidopsis thaliana (Mouse-ear| cress) Length = 367 Score = 30.0 bits (66), Expect = 9.6 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 12/65 (18%) Frame = -2 Query: 611 SNPWIVHSSLTTDSSHMV------------PEIADSRSCADKPNWQLTIQQNSRNIGSPQ 468 ++PW+++ S T DS + PE++ R C K W L NS + Sbjct: 71 TSPWLIYFSKTDDSYELYDPSMQKNCNLHFPELSGFRVCYSKDGWLLMYNPNSYQL---- 126 Query: 467 CFFGP 453 FF P Sbjct: 127 LFFNP 131
>Q9TF95:CYB_SPEAD Cytochrome b - Spermophilus adocetus (Tropical ground squirrel)| Length = 379 Score = 30.0 bits (66), Expect = 9.6 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 371 LLRILWMPSIRGSPAPRTPNHPLQSPP 451 ++ +L+MP + G P TP +PL +PP Sbjct: 240 MILVLFMPDLLGDPDNYTPANPLNTPP 266
>Q9Z0L2:ARTN_MOUSE Artemin precursor - Mus musculus (Mouse)| Length = 224 Score = 30.0 bits (66), Expect = 9.6 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Frame = +2 Query: 299 AGAHGQHPCHRPPSTYRRAGSRRSLL--RILWMPSIRGSPAPRTPNHPLQSPPRDQRNTA 472 A G P PP+ + G L R L P PAP P LQSPP R Sbjct: 49 AARDGPSPVLAPPTDHLPGGHTAHLCSERTLRPPPQSPQPAPPPPGPALQSPPAALRGAR 108 Query: 473 VSR 481 +R Sbjct: 109 AAR 111 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 128,799,936 Number of extensions: 2855095 Number of successful extensions: 9408 Number of sequences better than 10.0: 29 Number of HSP's gapped: 9399 Number of HSP's successfully gapped: 29 Length of query: 246 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 136 Effective length of database: 70,513,989 Effective search space: 9589902504 Effective search space used: 9589902504 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
