ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf136l12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q700K0:SSPO_RAT SCO-spondin precursor - Rattus norvegicus (Rat) 27 1.3
2Q13875:MOBP_HUMAN Myelin-associated oligodendrocyte basic protei... 33 1.6
3Q8CG65:SSPO_MOUSE SCO-spondin precursor - Mus musculus (Mouse) 25 7.2

>Q700K0:SSPO_RAT SCO-spondin precursor - Rattus norvegicus (Rat)|
          Length = 5141
 Score = 26.6 bits (57), Expect(2) = 1.3
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
 Frame = +1

Query: 805  SEWIGCTRP------SG*YVCICLCPHHVWTPC 885
            SEW  C++P      +    C+C  P H   PC
Sbjct: 3400 SEWTACSQPCRGQTRTRSRACVCPAPQHGGAPC 3432



 Score = 25.4 bits (54), Expect(2) = 1.3
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = +3

Query: 633  NCTCPSG*VEL------VRVDWLYSSEWIGCTRP 716
            +CTC  G +        V  DW   SEW  C++P
Sbjct: 3375 HCTCMEGRLNCTDLPCQVSGDWCPWSEWTACSQP 3408



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>Q13875:MOBP_HUMAN Myelin-associated oligodendrocyte basic protein - Homo sapiens|
           (Human)
          Length = 183

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 300 VVERPHVPRSAPRTI--PRSVPRSSTERTAPPRS 205
           VV  P  PRS PR+   PRS PRS  +  +PPRS
Sbjct: 90  VVRAPAKPRSPPRSERQPRSPPRSERQPRSPPRS 123



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>Q8CG65:SSPO_MOUSE SCO-spondin precursor - Mus musculus (Mouse)|
          Length = 4998

 Score = 25.4 bits (54), Expect(2) = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
 Frame = +1

Query: 805  SEWIGCTRP------SG*YVCICLCPHHVWTPC 885
            S+W  C++P      +    C+C  P H  +PC
Sbjct: 3251 SKWTACSQPCRGQTRTRSRACVCPAPQHGGSPC 3283



 Score = 23.9 bits (50), Expect(2) = 7.2
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = +3

Query: 633  NCTCPSG*VEL------VRVDWLYSSEWIGCTRP 716
            +CTC  G +        V  DW   S+W  C++P
Sbjct: 3226 HCTCMEGRLNCTDLPCQVSGDWCPWSKWTACSQP 3259


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 183,503,606
Number of extensions: 4343802
Number of successful extensions: 11106
Number of sequences better than 10.0: 3
Number of HSP's gapped: 11067
Number of HSP's successfully gapped: 5
Length of query: 310
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 197
Effective length of database: 69,691,104
Effective search space: 13729147488
Effective search space used: 13729147488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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