ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf133o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O42701:NAH2_ZYGRO Na(+)/H(+) antiporter 2 - Zygosaccharomyces ro... 30 4.5
2Q11194:YX23_CAEEL Uncharacterized protein C04E7.3 - Caenorhabdit... 29 7.7
3P55416:TRAB_RHISN Probable conjugal transfer protein traB - Rhiz... 29 7.7

>O42701:NAH2_ZYGRO Na(+)/H(+) antiporter 2 - Zygosaccharomyces rouxii (Candida mogii)|
          Length = 808
 Score = 29.6 bits (65), Expect = 4.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 387 HKR*GLAIKPQTLQIHQATNQQNVNPYHYQSSNNSAT--DRKG--FIQPRTSPIHGSRAK 220
           H R   AI P   ++HQ TN+   N Y+     N     D  G  F + R SP HG + K
Sbjct: 684 HDRPKRAISPPLEKLHQITNEARKNKYYAYKVGNDLVIEDESGEVFRRYRISP-HGGKRK 742

Query: 219 L 217
           +
Sbjct: 743 I 743



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>Q11194:YX23_CAEEL Uncharacterized protein C04E7.3 - Caenorhabditis elegans|
          Length = 518

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = -2

Query: 375 GLAIKPQTLQIHQATNQQNVNPYHYQSSNNSATDRKGFIQPRTSPIHGSRAKLAAPRLGA 196
           GL  +P  L      NQQ    Y+   SN +  DRK    PR S +   RA  A P +G 
Sbjct: 58  GLVSRP--LNTGVGPNQQVQEQYN-AFSNQNENDRKMMEDPRESAVPNKRAAAAPPWIGY 114

Query: 195 HQ 190
            Q
Sbjct: 115 TQ 116



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>P55416:TRAB_RHISN Probable conjugal transfer protein traB - Rhizobium sp. (strain|
           NGR234)
          Length = 387

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +2

Query: 185 VIW-----CAPRRG--AASFALLPCMGLVRGWINPFLSVALLLLDW*WYG 313
           V+W     C P R   AA    +P MG+  GW +P  +  +L   W W+G
Sbjct: 96  VLWTKRSDCRPFRYLLAAVLMAVPPMGIT-GWAHPVTAAGILFPGWGWWG 144


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 61,387,668
Number of extensions: 1160155
Number of successful extensions: 2820
Number of sequences better than 10.0: 3
Number of HSP's gapped: 2820
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 100,686,439
Length adjustment: 103
Effective length of query: 47
Effective length of database: 72,434,054
Effective search space: 3404400538
Effective search space used: 3404400538
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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